RNA–Protein interactions for RNA: ENST00000421670.3

DDX55-203, Transcript of DEAD-box helicase 55, humanhuman

TSL 1 (best) BASIC

Gene DDX55, Length 1,574 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-203ENST00000421670 RAB3GAP2Q9H2M9 1393 aa23.54■■□□□ 1.36
DDX55-203ENST00000421670 KIF3BO15066 747 aa23.52■■□□□ 1.36
DDX55-203ENST00000421670 ARID4BQ4LE39 1312 aaPredicted RBP23.52■■□□□ 1.36
DDX55-203ENST00000421670 PRDM15P57071 1507 aaPredicted RBP23.51■■□□□ 1.35
DDX55-203ENST00000421670 CEP152O94986 1710 aa23.5■■□□□ 1.35
DDX55-203ENST00000421670 FER1L4A9Z1Z3 1794 aa23.47■■□□□ 1.35
DDX55-203ENST00000421670 MLECQ14165 292 aa23.47■■□□□ 1.35
DDX55-203ENST00000421670 IQGAP3Q86VI3 1631 aa23.46■■□□□ 1.35
DDX55-203ENST00000421670 GGT6Q6P531 493 aa23.45■■□□□ 1.34
DDX55-203ENST00000421670 CLTCQ00610 1675 aaKnown RBP23.45■■□□□ 1.34
DDX55-203ENST00000421670 ZC3H13Q5T200 1668 aaKnown RBP23.44■■□□□ 1.34
DDX55-203ENST00000421670 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.44■■□□□ 1.347e-7■■■■□ 21
DDX55-203ENST00000421670 VWDEQ8N2E2 1590 aa23.43■■□□□ 1.34
DDX55-203ENST00000421670 KDM5DQ9BY66 1539 aa23.42■■□□□ 1.34
DDX55-203ENST00000421670 MADDQ8WXG6 1647 aa23.42■■□□□ 1.34
DDX55-203ENST00000421670 ADAMTSL3P82987 1691 aa23.41■■□□□ 1.34
DDX55-203ENST00000421670 ABCC3O15438 1527 aa23.4■■□□□ 1.34
DDX55-203ENST00000421670 FAM135AQ9P2D6 1515 aa23.4■■□□□ 1.34
DDX55-203ENST00000421670 CAMSAP1Q5T5Y3 1602 aa23.39■■□□□ 1.34
DDX55-203ENST00000421670 NUP155O75694 1391 aa23.39■■□□□ 1.33
DDX55-203ENST00000421670 TRIM52Q96A61 297 aa23.38■■□□□ 1.33
DDX55-203ENST00000421670 RIMS1Q86UR5 1692 aaKnown RBP23.38■■□□□ 1.33
DDX55-203ENST00000421670 KANK1Q14678 1352 aa23.38■■□□□ 1.33
DDX55-203ENST00000421670 TET3O43151 1660 aa23.37■■□□□ 1.33
DDX55-203ENST00000421670 PZPP20742 1482 aa23.36■■□□□ 1.33
DDX55-203ENST00000421670 MROH2AA6NES4 1674 aa23.35■■□□□ 1.33
DDX55-203ENST00000421670 HRCP23327 699 aa23.34■■□□□ 1.33
DDX55-203ENST00000421670 LMTK2Q8IWU2 1503 aa23.34■■□□□ 1.33
DDX55-203ENST00000421670 E9PCH4 1651 aa23.34■■□□□ 1.33
DDX55-203ENST00000421670 WASHC2CQ9Y4E1 1318 aa23.33■■□□□ 1.33
DDX55-203ENST00000421670 EFCAB6Q5THR3 1501 aa23.33■■□□□ 1.33
DDX55-203ENST00000421670 CFAP65Q6ZU64 1925 aaKnown RBP23.32■■□□□ 1.32
DDX55-203ENST00000421670 C3P01024 1663 aa23.3■■□□□ 1.32
DDX55-203ENST00000421670 ESF1Q9H501 851 aaKnown RBP23.28■■□□□ 1.32
DDX55-203ENST00000421670 PPP6R1Q9UPN7 881 aa23.28■■□□□ 1.32
DDX55-203ENST00000421670 ACIN1Q9UKV3 1341 aaKnown RBP23.28■■□□□ 1.32
DDX55-203ENST00000421670 CNTLNQ9NXG0 1405 aa23.27■■□□□ 1.32
DDX55-203ENST00000421670 SLC4A1APQ9BWU0 796 aaKnown RBP23.27■■□□□ 1.32
DDX55-203ENST00000421670 PREX1Q8TCU6 1659 aa23.24■■□□□ 1.31
DDX55-203ENST00000421670 MPHOSPH9Q99550 1183 aa23.24■■□□□ 1.31
DDX55-203ENST00000421670 NPATQ14207 1427 aa23.24■■□□□ 1.31
DDX55-203ENST00000421670 SPHKAPQ2M3C7 1700 aa23.23■■□□□ 1.31
DDX55-203ENST00000421670 ZMYM3Q14202 1370 aa23.21■■□□□ 1.31
DDX55-203ENST00000421670 DHX57Q6P158 1386 aaKnown RBP23.21■■□□□ 1.31
DDX55-203ENST00000421670 PKD2Q13563 968 aa23.2■■□□□ 1.3
DDX55-203ENST00000421670 ARHGAP31Q2M1Z3 1444 aa23.2■■□□□ 1.3
DDX55-203ENST00000421670 KDM4FA0A1W2PPD8 638 aa23.19■■□□□ 1.3
DDX55-203ENST00000421670 FOXD1Q16676 465 aa23.19■■□□□ 1.3
DDX55-203ENST00000421670 RPRD2Q5VT52 1461 aaKnown RBP23.19■■□□□ 1.3
DDX55-203ENST00000421670 PTPRMP28827 1452 aa23.18■■□□□ 1.3
DDX55-203ENST00000421670 PLPPR3Q6T4P5 718 aa23.17■■□□□ 1.3
DDX55-203ENST00000421670 ERVK-7P63135 1459 aa23.16■■□□□ 1.3
DDX55-203ENST00000421670 SYNMO15061 1565 aa23.15■■□□□ 1.3
DDX55-203ENST00000421670 CEBPAP49715 358 aaPredicted RBP23.15■■□□□ 1.3
DDX55-203ENST00000421670 SPATA31D1Q6ZQQ2 1576 aa23.15■■□□□ 1.3
DDX55-203ENST00000421670 TRPM2O94759 1503 aa23.12■■□□□ 1.29
DDX55-203ENST00000421670 FBXO31Q5XUX0 539 aaPredicted RBP23.12■■□□□ 1.29
DDX55-203ENST00000421670 UGGT1Q9NYU2 1555 aa23.11■■□□□ 1.29
DDX55-203ENST00000421670 NOS1P29475 1434 aa23.1■■□□□ 1.29
DDX55-203ENST00000421670 CLTCL1P53675 1640 aa23.09■■□□□ 1.29
DDX55-203ENST00000421670 PLA2R1Q13018 1463 aa23.09■■□□□ 1.29
DDX55-203ENST00000421670 PTPRTO14522 1441 aa23.08■■□□□ 1.29
DDX55-203ENST00000421670 PIK3C2BO00750 1634 aa23.08■■□□□ 1.29
DDX55-203ENST00000421670 MYO3AQ8NEV4 1616 aa23.08■■□□□ 1.29
DDX55-203ENST00000421670 ANKRD30BQ9BXX2 1392 aa23.05■■□□□ 1.28
DDX55-203ENST00000421670 TNRQ92752 1358 aa23.04■■□□□ 1.28
DDX55-203ENST00000421670 KIF1BO60333 1816 aa23.04■■□□□ 1.28
DDX55-203ENST00000421670 MYO5BQ9ULV0 1848 aa23.03■■□□□ 1.28
DDX55-203ENST00000421670 SETD1BQ9UPS6 1966 aaKnown RBP23.03■■□□□ 1.28
DDX55-203ENST00000421670 CCER1Q8TC90 406 aaPredicted RBP23.02■■□□□ 1.28
DDX55-203ENST00000421670 CCDC144AA2RUR9 1427 aa23■■□□□ 1.27
DDX55-203ENST00000421670 ZNF142P52746 1687 aaPredicted RBP23■■□□□ 1.27
DDX55-203ENST00000421670 UBR1Q8IWV7 1749 aa22.98■■□□□ 1.27
DDX55-203ENST00000421670 CEP170BQ9Y4F5 1589 aaPredicted RBP22.97■■□□□ 1.27
DDX55-203ENST00000421670 NLRP1Q9C000 1473 aa22.97■■□□□ 1.27
DDX55-203ENST00000421670 TMEM131LA2VDJ0 1609 aa22.95■■□□□ 1.27
DDX55-203ENST00000421670 ADGRB3O60242 1522 aa22.95■■□□□ 1.26
DDX55-203ENST00000421670 KDM5AP29375 1690 aaKnown RBP22.94■■□□□ 1.26
DDX55-203ENST00000421670 IDI1Q13907 227 aa22.93■■□□□ 1.26
DDX55-203ENST00000421670 SIN3AQ96ST3 1273 aa22.93■■□□□ 1.26
DDX55-203ENST00000421670 SLC52A1Q9NWF4 448 aa22.93■■□□□ 1.26
DDX55-203ENST00000421670 A2ML1A8K2U0 1454 aa22.91■■□□□ 1.26
DDX55-203ENST00000421670 UHRF1BP1Q6BDS2 1440 aa22.91■■□□□ 1.26
DDX55-203ENST00000421670 CLSPNQ9HAW4 1339 aa22.89■■□□□ 1.26
DDX55-203ENST00000421670 NEUROD1Q13562 356 aa22.89■■□□□ 1.25
DDX55-203ENST00000421670 CHGAP10645 457 aaKnown RBP22.88■■□□□ 1.25
DDX55-203ENST00000421670 IFT172Q9UG01 1749 aa22.87■■□□□ 1.25
DDX55-203ENST00000421670 SPATA31E1Q6ZUB1 1445 aa22.87■■□□□ 1.25
DDX55-203ENST00000421670 NEURL4Q96JN8 1562 aa22.86■■□□□ 1.25
DDX55-203ENST00000421670 PPLO60437 1756 aa22.85■■□□□ 1.25
DDX55-203ENST00000421670 LMTK3Q96Q04 1460 aa22.84■■□□□ 1.25
DDX55-203ENST00000421670 STAG3Q9UJ98 1225 aa22.84■■□□□ 1.25
DDX55-203ENST00000421670 NEXMIFQ5QGS0 1516 aa22.81■■□□□ 1.24
DDX55-203ENST00000421670 RGL3Q3MIN7 710 aa22.8■■□□□ 1.24
DDX55-203ENST00000421670 ZNF326Q5BKZ1 582 aaKnown RBP22.79■■□□□ 1.24
DDX55-203ENST00000421670 POLR1AO95602 1720 aaPredicted RBP22.78■■□□□ 1.24
DDX55-203ENST00000421670 SLIT1O75093 1534 aa22.77■■□□□ 1.24
DDX55-203ENST00000421670 TONSLQ96HA7 1378 aa22.76■■□□□ 1.23
DDX55-203ENST00000421670 ZFYVE9O95405 1425 aa22.75■■□□□ 1.23
DDX55-203ENST00000421670 ARHGAP23Q9P227 1491 aa22.75■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms