RNA–Protein interactions for RNA: ENST00000419378.5

HMGN1-205, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 850 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-205ENST00000419378 PLB1Q6P1J6 1458 aa11.44□□□□□ -0.58
HMGN1-205ENST00000419378 NCKAP5LQ9HCH0 1330 aa11.44□□□□□ -0.58
HMGN1-205ENST00000419378 GABBR2O75899 941 aa11.44□□□□□ -0.58
HMGN1-205ENST00000419378 KDM5BQ9UGL1 1544 aa11.44□□□□□ -0.58
HMGN1-205ENST00000419378 ABCA8O94911 1581 aa11.43□□□□□ -0.58
HMGN1-205ENST00000419378 ASTLQ6HA08 431 aaPredicted RBP11.43□□□□□ -0.58
HMGN1-205ENST00000419378 DPY19L2Q6NUT2 758 aa11.43□□□□□ -0.58
HMGN1-205ENST00000419378 ZCCHC11Q5TAX3 1644 aaKnown RBP11.42□□□□□ -0.58
HMGN1-205ENST00000419378 TPRNQ4KMQ1 711 aa11.42□□□□□ -0.58
HMGN1-205ENST00000419378 ASXL2Q76L83 1435 aa11.42□□□□□ -0.58
HMGN1-205ENST00000419378 FAM69CQ0P6D2 419 aa11.41□□□□□ -0.58
HMGN1-205ENST00000419378 LARP6Q9BRS8 491 aaKnown RBP11.41□□□□□ -0.58
HMGN1-205ENST00000419378 PDE4AP27815 886 aa11.4□□□□□ -0.58
HMGN1-205ENST00000419378 PDCD7Q8N8D1 485 aaKnown RBP11.39□□□□□ -0.59
HMGN1-205ENST00000419378 CRISPLD2Q9H0B8 497 aa11.39□□□□□ -0.59
HMGN1-205ENST00000419378 EFCAB5A4FU69 1503 aa11.39□□□□□ -0.59
HMGN1-205ENST00000419378 E2F4Q16254 413 aa11.38□□□□□ -0.59
HMGN1-205ENST00000419378 FHOD3Q2V2M9 1422 aa11.37□□□□□ -0.59
HMGN1-205ENST00000419378 RANGAP1P46060 587 aaPredicted RBP11.37□□□□□ -0.59
HMGN1-205ENST00000419378 IRX5P78411 483 aaPredicted RBP11.37□□□□□ -0.59
HMGN1-205ENST00000419378 IER5LQ5T953 404 aa11.37□□□□□ -0.59
HMGN1-205ENST00000419378 GLI2P10070 1586 aa11.37□□□□□ -0.59
HMGN1-205ENST00000419378 RAPGEF6Q8TEU7 1601 aa11.36□□□□□ -0.59
HMGN1-205ENST00000419378 OCEL1Q9H607 264 aa11.36□□□□□ -0.59
HMGN1-205ENST00000419378 EPRSP07814 1512 aaKnown RBP11.35□□□□□ -0.59
HMGN1-205ENST00000419378 UBTFP17480 764 aaKnown RBP11.35□□□□□ -0.59
HMGN1-205ENST00000419378 MFSD10Q14728 455 aa11.35□□□□□ -0.59
HMGN1-205ENST00000419378 WDR7Q9Y4E6 1490 aa11.35□□□□□ -0.59
HMGN1-205ENST00000419378 MICALL2Q8IY33 904 aa11.34□□□□□ -0.59
HMGN1-205ENST00000419378 DDX27Q96GQ7 796 aaKnown RBP11.34□□□□□ -0.59
HMGN1-205ENST00000419378 DCBLD2Q96PD2 775 aa11.34□□□□□ -0.59
HMGN1-205ENST00000419378 TSPOAP1O95153 1857 aa11.34□□□□□ -0.59
HMGN1-205ENST00000419378 PELP1Q8IZL8 1130 aaKnown RBP11.33□□□□□ -0.6
HMGN1-205ENST00000419378 MAP3K4Q9Y6R4 1608 aa11.32□□□□□ -0.6
HMGN1-205ENST00000419378 PPRC1Q5VV67 1664 aaKnown RBP11.32□□□□□ -0.6
HMGN1-205ENST00000419378 ATP10BO94823 1461 aa11.32□□□□□ -0.6
HMGN1-205ENST00000419378 NUP153P49790 1475 aaKnown RBP11.32□□□□□ -0.6
HMGN1-205ENST00000419378 PLCG2P16885 1265 aa11.31□□□□□ -0.6
HMGN1-205ENST00000419378 ARHGEF1Q92888 912 aaKnown RBP11.31□□□□□ -0.6
HMGN1-205ENST00000419378 ARHGAP35Q9NRY4 1499 aa11.31□□□□□ -0.6
HMGN1-205ENST00000419378 ARID3CA6NKF2 412 aa11.3□□□□□ -0.6
HMGN1-205ENST00000419378 KDM6BO15054 1643 aa11.29□□□□□ -0.6
HMGN1-205ENST00000419378 GPHNQ9NQX3 736 aaPredicted RBP11.29□□□□□ -0.6
HMGN1-205ENST00000419378 BOLA1Q9Y3E2 137 aa11.29□□□□□ -0.6
HMGN1-205ENST00000419378 CFAP43Q8NDM7 1665 aa11.27□□□□□ -0.61
HMGN1-205ENST00000419378 FMN1Q68DA7 1419 aa11.26□□□□□ -0.61
HMGN1-205ENST00000419378 G3V3G9 751 aa11.26□□□□□ -0.61
HMGN1-205ENST00000419378 SEC24BO95487 1268 aa11.26□□□□□ -0.61
HMGN1-205ENST00000419378 PPP1R15BQ5SWA1 713 aa11.26□□□□□ -0.61
HMGN1-205ENST00000419378 TMEM121BQ9BXQ6 578 aaPredicted RBP11.26□□□□□ -0.61
HMGN1-205ENST00000419378 COLQQ9Y215 455 aaPredicted RBP11.26□□□□□ -0.61
HMGN1-205ENST00000419378 TEX14Q8IWB6 1497 aa11.25□□□□□ -0.61
HMGN1-205ENST00000419378 KCNH8Q96L42 1107 aa11.25□□□□□ -0.61
HMGN1-205ENST00000419378 CAMK2BQ13554 666 aa11.24□□□□□ -0.61
HMGN1-205ENST00000419378 TMC2Q8TDI7 906 aa11.24□□□□□ -0.61
HMGN1-205ENST00000419378 SLC39A7Q92504 469 aa11.24□□□□□ -0.61
HMGN1-205ENST00000419378 CD109Q6YHK3 1445 aa11.24□□□□□ -0.61
HMGN1-205ENST00000419378 HECW1Q76N89 1606 aa11.24□□□□□ -0.61
HMGN1-205ENST00000419378 ABCA9Q8IUA7 1624 aa11.24□□□□□ -0.61
HMGN1-205ENST00000419378 L3MBTL3Q96JM7 780 aaPredicted RBP11.23□□□□□ -0.61
HMGN1-205ENST00000419378 MAGI3Q5TCQ9 1506 aa11.23□□□□□ -0.61
HMGN1-205ENST00000419378 POTEIP0CG38 1075 aa11.22□□□□□ -0.61
HMGN1-205ENST00000419378 CDK13Q14004 1512 aaKnown RBP11.22□□□□□ -0.61
HMGN1-205ENST00000419378 DSG2Q14126 1118 aa11.22□□□□□ -0.61
HMGN1-205ENST00000419378 SEMA3EO15041 775 aa11.21□□□□□ -0.61
HMGN1-205ENST00000419378 PCF11O94913 1555 aaKnown RBP11.2□□□□□ -0.62
HMGN1-205ENST00000419378 CLIP1P30622 1438 aa11.2□□□□□ -0.62
HMGN1-205ENST00000419378 POTEFA5A3E0 1075 aa11.2□□□□□ -0.62
HMGN1-205ENST00000419378 C7P10643 843 aa11.2□□□□□ -0.62
HMGN1-205ENST00000419378 ARIH1Q9Y4X5 557 aaPredicted RBP11.2□□□□□ -0.62
HMGN1-205ENST00000419378 COL17A1Q9UMD9 1497 aaPredicted RBP11.19□□□□□ -0.62
HMGN1-205ENST00000419378 C2orf72A6NCS6 295 aa11.19□□□□□ -0.62
HMGN1-205ENST00000419378 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.19□□□□□ -0.62
HMGN1-205ENST00000419378 METRNQ9UJH8 293 aa11.19□□□□□ -0.62
HMGN1-205ENST00000419378 FOXK1P85037 733 aa11.18□□□□□ -0.62
HMGN1-205ENST00000419378 LMOD2Q6P5Q4 547 aa11.18□□□□□ -0.62
HMGN1-205ENST00000419378 LRRIQ1Q96JM4 1722 aa11.18□□□□□ -0.62
HMGN1-205ENST00000419378 CASKIN1Q8WXD9 1431 aa11.18□□□□□ -0.62
HMGN1-205ENST00000419378 TESPA1A2RU30 521 aaPredicted RBP11.17□□□□□ -0.62
HMGN1-205ENST00000419378 PLEKHD1A6NEE1 506 aa11.17□□□□□ -0.62
HMGN1-205ENST00000419378 KIF3CO14782 793 aa11.17□□□□□ -0.62
HMGN1-205ENST00000419378 ATP1B4Q9UN42 357 aaPredicted RBP11.17□□□□□ -0.62
HMGN1-205ENST00000419378 TTC37Q6PGP7 1564 aa11.16□□□□□ -0.62
HMGN1-205ENST00000419378 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.16□□□□□ -0.621e-6■■■■□ 20.1
HMGN1-205ENST00000419378 FYCO1Q9BQS8 1478 aa11.15□□□□□ -0.62
HMGN1-205ENST00000419378 TULP1O00294 542 aaPredicted RBP11.15□□□□□ -0.62
HMGN1-205ENST00000419378 PLPP6Q8IY26 295 aa11.15□□□□□ -0.62
HMGN1-205ENST00000419378 EMILIN3Q9NT22 766 aa11.15□□□□□ -0.62
HMGN1-205ENST00000419378 CEP162Q5TB80 1403 aa11.15□□□□□ -0.62
HMGN1-205ENST00000419378 CCDC18Q5T9S5 1454 aa11.14□□□□□ -0.63
HMGN1-205ENST00000419378 TMEM92Q6UXU6 159 aa11.14□□□□□ -0.63
HMGN1-205ENST00000419378 ARAP3Q8WWN8 1544 aa11.14□□□□□ -0.63
HMGN1-205ENST00000419378 NEO1Q92859 1461 aa11.13□□□□□ -0.63
HMGN1-205ENST00000419378 KIF14Q15058 1648 aa11.13□□□□□ -0.63
HMGN1-205ENST00000419378 TROQ12816 1431 aaPredicted RBP11.12□□□□□ -0.63
HMGN1-205ENST00000419378 DPYSL4O14531 572 aa11.12□□□□□ -0.63
HMGN1-205ENST00000419378 PHLDB1Q86UU1 1377 aa11.12□□□□□ -0.63
HMGN1-205ENST00000419378 CDK11AQ9UQ88 783 aaPredicted RBP11.11□□□□□ -0.63
HMGN1-205ENST00000419378 CFAP74Q9C0B2 1584 aa11.11□□□□□ -0.63
HMGN1-205ENST00000419378 FANCAO15360 1455 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms