RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 TCOF1Q13428 1488 aaKnown RBP23.52■■□□□ 1.36
RPS28-201ENST00000417088 KANK4Q5T7N3 995 aaPredicted RBP23.51■■□□□ 1.35
RPS28-201ENST00000417088 FBXO31Q5XUX0 539 aaPredicted RBP23.51■■□□□ 1.35
RPS28-201ENST00000417088 A2ML1A8K2U0 1454 aa23.49■■□□□ 1.35
RPS28-201ENST00000417088 IQSEC2Q5JU85 1478 aa23.49■■□□□ 1.35
RPS28-201ENST00000417088 KDM5DQ9BY66 1539 aa23.49■■□□□ 1.35
RPS28-201ENST00000417088 ZNF335Q9H4Z2 1342 aaPredicted RBP23.49■■□□□ 1.35
RPS28-201ENST00000417088 WASHC2CQ9Y4E1 1318 aa23.49■■□□□ 1.35
RPS28-201ENST00000417088 MAP3K1Q13233 1512 aa23.48■■□□□ 1.35
RPS28-201ENST00000417088 FAM135AQ9P2D6 1515 aa23.48■■□□□ 1.35
RPS28-201ENST00000417088 TNRQ92752 1358 aa23.47■■□□□ 1.35
RPS28-201ENST00000417088 PZPP20742 1482 aa23.47■■□□□ 1.35
RPS28-201ENST00000417088 DNMT1P26358 1616 aaKnown RBP23.46■■□□□ 1.35
RPS28-201ENST00000417088 MAST1Q9Y2H9 1570 aa23.42■■□□□ 1.34
RPS28-201ENST00000417088 MYOM3Q5VTT5 1437 aa23.42■■□□□ 1.34
RPS28-201ENST00000417088 MIA2Q96PC5 1412 aa23.42■■□□□ 1.34
RPS28-201ENST00000417088 RNF17Q9BXT8 1623 aaKnown RBP23.37■■□□□ 1.33
RPS28-201ENST00000417088 NLRP1Q9C000 1473 aa23.36■■□□□ 1.33
RPS28-201ENST00000417088 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.35■■□□□ 1.336e-8■■■■□ 21.9
RPS28-201ENST00000417088 ABCC3O15438 1527 aa23.34■■□□□ 1.33
RPS28-201ENST00000417088 UBAP1LF5GYI3 381 aa23.34■■□□□ 1.33
RPS28-201ENST00000417088 THEMISQ8N1K5 641 aaPredicted RBP23.34■■□□□ 1.33
RPS28-201ENST00000417088 DISP3Q9P2K9 1392 aa23.34■■□□□ 1.33
RPS28-201ENST00000417088 NEURL4Q96JN8 1562 aa23.34■■□□□ 1.33
RPS28-201ENST00000417088 ANKLE2Q86XL3 938 aa23.33■■□□□ 1.33
RPS28-201ENST00000417088 EIF2AK4Q9P2K8 1649 aaKnown RBP23.32■■□□□ 1.32
RPS28-201ENST00000417088 UGGT1Q9NYU2 1555 aa23.31■■□□□ 1.32
RPS28-201ENST00000417088 POLR1AO95602 1720 aaPredicted RBP23.31■■□□□ 1.32
RPS28-201ENST00000417088 MROH1Q8NDA8 1641 aa23.3■■□□□ 1.32
RPS28-201ENST00000417088 ZC3H13Q5T200 1668 aaKnown RBP23.29■■□□□ 1.32
RPS28-201ENST00000417088 APLP2Q06481 763 aa23.29■■□□□ 1.32
RPS28-201ENST00000417088 DUOX2Q9NRD8 1548 aa23.28■■□□□ 1.32
RPS28-201ENST00000417088 SPATA31D1Q6ZQQ2 1576 aa23.28■■□□□ 1.32
RPS28-201ENST00000417088 ABCC5O15440 1437 aa23.28■■□□□ 1.32
RPS28-201ENST00000417088 ERVK-7P63135 1459 aa23.26■■□□□ 1.31
RPS28-201ENST00000417088 SHANK2Q9UPX8 1470 aa23.26■■□□□ 1.31
RPS28-201ENST00000417088 ILDR2Q71H61 639 aa23.26■■□□□ 1.31
RPS28-201ENST00000417088 KIF15Q9NS87 1388 aa23.26■■□□□ 1.31
RPS28-201ENST00000417088 MED14O60244 1454 aa23.25■■□□□ 1.31
RPS28-201ENST00000417088 RRP7BPQ9NSQ0 103 aa23.25■■□□□ 1.31
RPS28-201ENST00000417088 NPHP4O75161 1426 aaPredicted RBP23.25■■□□□ 1.31
RPS28-201ENST00000417088 PTPN23Q9H3S7 1636 aa23.24■■□□□ 1.31
RPS28-201ENST00000417088 CPS1P31327 1500 aa23.23■■□□□ 1.31
RPS28-201ENST00000417088 DEPDC5O75140 1603 aa23.23■■□□□ 1.31
RPS28-201ENST00000417088 CEP152O94986 1710 aa23.22■■□□□ 1.31
RPS28-201ENST00000417088 DAPK1P53355 1430 aa23.21■■□□□ 1.31
RPS28-201ENST00000417088 ERBINQ96RT1 1412 aa23.21■■□□□ 1.31
RPS28-201ENST00000417088 VWDEQ8N2E2 1590 aa23.21■■□□□ 1.31
RPS28-201ENST00000417088 CROCC2H7BZ55 1655 aa23.2■■□□□ 1.3
RPS28-201ENST00000417088 FGD6Q6ZV73 1430 aa23.2■■□□□ 1.3
RPS28-201ENST00000417088 PRDM15P57071 1507 aaPredicted RBP23.18■■□□□ 1.3
RPS28-201ENST00000417088 ARHGAP31Q2M1Z3 1444 aa23.18■■□□□ 1.3
RPS28-201ENST00000417088 CFAP65Q6ZU64 1925 aaKnown RBP23.18■■□□□ 1.3
RPS28-201ENST00000417088 TOM1O60784 492 aa23.16■■□□□ 1.3
RPS28-201ENST00000417088 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.16■■□□□ 1.3
RPS28-201ENST00000417088 IQGAP1P46940 1657 aa23.16■■□□□ 1.3
RPS28-201ENST00000417088 CHIC2Q9UKJ5 165 aa23.15■■□□□ 1.3
RPS28-201ENST00000417088 PIP4K2BP78356 416 aa23.14■■□□□ 1.29
RPS28-201ENST00000417088 UBR1Q8IWV7 1749 aa23.13■■□□□ 1.29
RPS28-201ENST00000417088 ANKRD30AQ9BXX3 1397 aa23.13■■□□□ 1.29
RPS28-201ENST00000417088 SCAF1Q9H7N4 1312 aaKnown RBP23.12■■□□□ 1.29
RPS28-201ENST00000417088 KANK1Q14678 1352 aa23.11■■□□□ 1.29
RPS28-201ENST00000417088 SOCS7O14512 581 aa23.1■■□□□ 1.29
RPS28-201ENST00000417088 LTKP29376 864 aa23.1■■□□□ 1.29
RPS28-201ENST00000417088 HSPA1LP34931 641 aa23.1■■□□□ 1.29
RPS28-201ENST00000417088 SCAF11Q99590 1463 aaKnown RBP23.09■■□□□ 1.29
RPS28-201ENST00000417088 ARHGAP23Q9P227 1491 aa23.09■■□□□ 1.29
RPS28-201ENST00000417088 TXNDC2Q86VQ3 553 aa23.08■■□□□ 1.29
RPS28-201ENST00000417088 SLIT1O75093 1534 aa23.08■■□□□ 1.28
RPS28-201ENST00000417088 STRCP1A6NGW2 1772 aa23.07■■□□□ 1.28
RPS28-201ENST00000417088 LMTK2Q8IWU2 1503 aa23.06■■□□□ 1.28
RPS28-201ENST00000417088 LRRC7Q96NW7 1537 aa23.06■■□□□ 1.28
RPS28-201ENST00000417088 ALKQ9UM73 1620 aa23.05■■□□□ 1.28
RPS28-201ENST00000417088 EID1Q9Y6B2 187 aa23.03■■□□□ 1.28
RPS28-201ENST00000417088 PIK3C2BO00750 1634 aa23.03■■□□□ 1.28
RPS28-201ENST00000417088 ADGRL2O95490 1459 aa23.03■■□□□ 1.28
RPS28-201ENST00000417088 IDI1Q13907 227 aa23.02■■□□□ 1.28
RPS28-201ENST00000417088 FAM50AQ14320 339 aaKnown RBP23.02■■□□□ 1.28
RPS28-201ENST00000417088 TMEM2Q9UHN6 1383 aa23.01■■□□□ 1.27
RPS28-201ENST00000417088 STAG3Q9UJ98 1225 aa23.01■■□□□ 1.27
RPS28-201ENST00000417088 SYNMO15061 1565 aa23■■□□□ 1.27
RPS28-201ENST00000417088 NOS1P29475 1434 aa22.99■■□□□ 1.27
RPS28-201ENST00000417088 EFCAB6Q5THR3 1501 aa22.97■■□□□ 1.27
RPS28-201ENST00000417088 ANKRD50Q9ULJ7 1429 aa22.96■■□□□ 1.27
RPS28-201ENST00000417088 KDM5AP29375 1690 aaKnown RBP22.94■■□□□ 1.26
RPS28-201ENST00000417088 MED1Q15648 1581 aaPredicted RBP22.93■■□□□ 1.26
RPS28-201ENST00000417088 SLC52A1Q9NWF4 448 aa22.92■■□□□ 1.26
RPS28-201ENST00000417088 SENP3Q9H4L4 574 aaPredicted RBP22.9■■□□□ 1.26
RPS28-201ENST00000417088 ADGRB3O60242 1522 aa22.89■■□□□ 1.26
RPS28-201ENST00000417088 SLC26A8Q96RN1 970 aa22.89■■□□□ 1.25
RPS28-201ENST00000417088 RPRD2Q5VT52 1461 aaKnown RBP22.89■■□□□ 1.25
RPS28-201ENST00000417088 TET3O43151 1660 aa22.88■■□□□ 1.25
RPS28-201ENST00000417088 XIRP1Q702N8 1843 aaKnown RBP22.87■■□□□ 1.25
RPS28-201ENST00000417088 KCNA6P17658 529 aa22.87■■□□□ 1.25
RPS28-201ENST00000417088 TMEM94Q12767 1356 aa22.85■■□□□ 1.25
RPS28-201ENST00000417088 ROCK1Q13464 1354 aa22.82■■□□□ 1.24
RPS28-201ENST00000417088 PROSER2Q86WR7 435 aaPredicted RBP22.81■■□□□ 1.24
RPS28-201ENST00000417088 UNC13BO14795 1591 aa22.8■■□□□ 1.24
RPS28-201ENST00000417088 BCANQ96GW7 911 aa22.8■■□□□ 1.24
RPS28-201ENST00000417088 ZFYVE9O95405 1425 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms