RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 ARID4BQ4LE39 1312 aaPredicted RBP13.48□□□□□ -0.25
SS18-203ENST00000415083 POLR3GLQ9BT43 218 aa13.48□□□□□ -0.25
SS18-203ENST00000415083 NUDCQ9Y266 331 aa13.47□□□□□ -0.25
SS18-203ENST00000415083 KDM2AQ9Y2K7 1162 aa13.46□□□□□ -0.25
SS18-203ENST00000415083 CARD11Q9BXL7 1154 aa13.46□□□□□ -0.25
SS18-203ENST00000415083 PRAG1Q86YV5 1406 aa13.46□□□□□ -0.25
SS18-203ENST00000415083 ERCC6L2Q5T890 1561 aa13.46□□□□□ -0.25
SS18-203ENST00000415083 PLEKHD1A6NEE1 506 aa13.46□□□□□ -0.26
SS18-203ENST00000415083 SYCP2Q9BX26 1530 aa13.45□□□□□ -0.26
SS18-203ENST00000415083 A2MP01023 1474 aa13.45□□□□□ -0.26
SS18-203ENST00000415083 DCAF11Q8TEB1 546 aa13.45□□□□□ -0.26
SS18-203ENST00000415083 NBPF1Q3BBV0 1214 aa13.44□□□□□ -0.26
SS18-203ENST00000415083 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.44□□□□□ -0.26
SS18-203ENST00000415083 CCDC141Q6ZP82 1450 aa13.44□□□□□ -0.26
SS18-203ENST00000415083 CHD1O14646 1710 aa13.44□□□□□ -0.26
SS18-203ENST00000415083 MAST1Q9Y2H9 1570 aa13.44□□□□□ -0.26
SS18-203ENST00000415083 PER1O15534 1290 aaPredicted RBP13.43□□□□□ -0.26
SS18-203ENST00000415083 PRDM15P57071 1507 aaPredicted RBP13.42□□□□□ -0.26
SS18-203ENST00000415083 IQGAP3Q86VI3 1631 aa13.42□□□□□ -0.26
SS18-203ENST00000415083 SHROOM2Q13796 1616 aa13.42□□□□□ -0.26
SS18-203ENST00000415083 ROCK2O75116 1388 aaKnown RBP13.41□□□□□ -0.26
SS18-203ENST00000415083 PARD3Q8TEW0 1356 aa13.41□□□□□ -0.26
SS18-203ENST00000415083 LAMC1P11047 1609 aa13.41□□□□□ -0.26
SS18-203ENST00000415083 DISP3Q9P2K9 1392 aa13.4□□□□□ -0.26
SS18-203ENST00000415083 GPRASP1Q5JY77 1395 aa13.4□□□□□ -0.26
SS18-203ENST00000415083 TESK2Q96S53 571 aa13.39□□□□□ -0.27
SS18-203ENST00000415083 PLXNC1O60486 1568 aa13.39□□□□□ -0.27
SS18-203ENST00000415083 BRD4O60885 1362 aaPredicted RBP13.39□□□□□ -0.27
SS18-203ENST00000415083 PAK3O75914 559 aaPredicted RBP13.39□□□□□ -0.27
SS18-203ENST00000415083 PLEKHH2Q8IVE3 1493 aa13.39□□□□□ -0.27
SS18-203ENST00000415083 RNF17Q9BXT8 1623 aaKnown RBP13.38□□□□□ -0.27
SS18-203ENST00000415083 MAGI2Q86UL8 1455 aa13.38□□□□□ -0.27
SS18-203ENST00000415083 COL17A1Q9UMD9 1497 aaPredicted RBP13.38□□□□□ -0.27
SS18-203ENST00000415083 MYBBP1AQ9BQG0 1328 aaKnown RBP13.38□□□□□ -0.27
SS18-203ENST00000415083 TSPY4P0CV99 314 aa13.38□□□□□ -0.27
SS18-203ENST00000415083 TSPY10P0CW01 314 aa13.38□□□□□ -0.27
SS18-203ENST00000415083 TMC1Q8TDI8 760 aa13.36□□□□□ -0.27
SS18-203ENST00000415083 ARHGAP5Q13017 1502 aa13.34□□□□□ -0.27
SS18-203ENST00000415083 CCDC144AA2RUR9 1427 aa13.34□□□□□ -0.27
SS18-203ENST00000415083 RGL3Q3MIN7 710 aa13.34□□□□□ -0.27
SS18-203ENST00000415083 CDCA7LQ96GN5 454 aa13.33□□□□□ -0.27
SS18-203ENST00000415083 ATP10AO60312 1499 aa13.33□□□□□ -0.28
SS18-203ENST00000415083 RALBP1Q15311 655 aa13.33□□□□□ -0.28
SS18-203ENST00000415083 ERICH6Q7L0X2 663 aa13.32□□□□□ -0.28
SS18-203ENST00000415083 KTN1Q86UP2 1357 aaKnown RBP13.32□□□□□ -0.28
SS18-203ENST00000415083 IQGAP1P46940 1657 aa13.32□□□□□ -0.28
SS18-203ENST00000415083 EXOC6Q8TAG9 804 aa13.32□□□□□ -0.28
SS18-203ENST00000415083 MADDQ8WXG6 1647 aa13.31□□□□□ -0.28
SS18-203ENST00000415083 BLMP54132 1417 aaPredicted RBP13.31□□□□□ -0.28
SS18-203ENST00000415083 RRP1P56182 461 aaKnown RBP13.31□□□□□ -0.28
SS18-203ENST00000415083 ABCC2Q92887 1545 aa13.3□□□□□ -0.28
SS18-203ENST00000415083 SALL2Q9Y467 1007 aaPredicted RBP13.3□□□□□ -0.28
SS18-203ENST00000415083 MYOM1P52179 1685 aa13.3□□□□□ -0.28
SS18-203ENST00000415083 WDR7Q9Y4E6 1490 aa13.3□□□□□ -0.28
SS18-203ENST00000415083 ZCCHC11Q5TAX3 1644 aaKnown RBP13.3□□□□□ -0.28
SS18-203ENST00000415083 CCDC136Q96JN2 1154 aa13.29□□□□□ -0.28
SS18-203ENST00000415083 ERBINQ96RT1 1412 aa13.29□□□□□ -0.28
SS18-203ENST00000415083 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.29□□□□□ -0.282e-7■■■□□ 19
SS18-203ENST00000415083 DUOX2Q9NRD8 1548 aa13.28□□□□□ -0.28
SS18-203ENST00000415083 SKAP1Q86WV1 359 aa13.28□□□□□ -0.28
SS18-203ENST00000415083 EIF2AK4Q9P2K8 1649 aaKnown RBP13.28□□□□□ -0.28
SS18-203ENST00000415083 TRAPPC8Q9Y2L5 1435 aa13.28□□□□□ -0.28
SS18-203ENST00000415083 NLRP13Q86W25 1043 aa13.27□□□□□ -0.28
SS18-203ENST00000415083 ABCC1P33527 1531 aa13.27□□□□□ -0.28
SS18-203ENST00000415083 SPHKAPQ2M3C7 1700 aa13.27□□□□□ -0.29
SS18-203ENST00000415083 PANK3Q9H999 370 aa13.27□□□□□ -0.29
SS18-203ENST00000415083 CC2D1BQ5T0F9 858 aaKnown RBP13.26□□□□□ -0.29
SS18-203ENST00000415083 CEP152O94986 1710 aa13.26□□□□□ -0.29
SS18-203ENST00000415083 CLTCL1P53675 1640 aa13.26□□□□□ -0.29
SS18-203ENST00000415083 RSPH4AQ5TD94 716 aa13.25□□□□□ -0.29
SS18-203ENST00000415083 RCAN3Q9UKA8 241 aa13.25□□□□□ -0.29
SS18-203ENST00000415083 PLIN1O60240 522 aa13.25□□□□□ -0.29
SS18-203ENST00000415083 ZMYM4Q5VZL5 1548 aa13.24□□□□□ -0.29
SS18-203ENST00000415083 NOP58Q9Y2X3 529 aaKnown RBP13.24□□□□□ -0.29
SS18-203ENST00000415083 DEPDC5O75140 1603 aa13.24□□□□□ -0.29
SS18-203ENST00000415083 PLCH2O75038 1416 aa13.24□□□□□ -0.29
SS18-203ENST00000415083 ZFYVE16Q7Z3T8 1539 aa13.22□□□□□ -0.29
SS18-203ENST00000415083 PLEKHH1Q9ULM0 1364 aa13.22□□□□□ -0.29
SS18-203ENST00000415083 C20orf194Q5TEA3 1177 aa13.22□□□□□ -0.29
SS18-203ENST00000415083 TRPM2O94759 1503 aa13.21□□□□□ -0.29
SS18-203ENST00000415083 INSRP06213 1382 aa13.21□□□□□ -0.3
SS18-203ENST00000415083 CLASP1Q7Z460 1538 aa13.2□□□□□ -0.3
SS18-203ENST00000415083 MROH1Q8NDA8 1641 aa13.2□□□□□ -0.3
SS18-203ENST00000415083 VWDEQ8N2E2 1590 aa13.19□□□□□ -0.3
SS18-203ENST00000415083 PTPRTO14522 1441 aa13.19□□□□□ -0.3
SS18-203ENST00000415083 IPO9Q96P70 1041 aaKnown RBP13.19□□□□□ -0.3
SS18-203ENST00000415083 ADAMTS8Q9UP79 889 aa13.19□□□□□ -0.3
SS18-203ENST00000415083 AMER1Q5JTC6 1135 aaPredicted RBP13.19□□□□□ -0.3
SS18-203ENST00000415083 WASHC2CQ9Y4E1 1318 aa13.19□□□□□ -0.3
SS18-203ENST00000415083 ZNF521Q96K83 1311 aa13.18□□□□□ -0.3
SS18-203ENST00000415083 SYNMO15061 1565 aa13.18□□□□□ -0.3
SS18-203ENST00000415083 UGGT1Q9NYU2 1555 aa13.18□□□□□ -0.3
SS18-203ENST00000415083 PDE3BQ13370 1112 aa13.17□□□□□ -0.3
SS18-203ENST00000415083 NBR1Q14596 966 aa13.17□□□□□ -0.3
SS18-203ENST00000415083 CRBNQ96SW2 442 aa13.17□□□□□ -0.3
SS18-203ENST00000415083 IFT172Q9UG01 1749 aa13.16□□□□□ -0.3
SS18-203ENST00000415083 AFAP1Q8N556 730 aa13.16□□□□□ -0.3
SS18-203ENST00000415083 MROH2AA6NES4 1674 aa13.16□□□□□ -0.3
SS18-203ENST00000415083 INO80Q9ULG1 1556 aaPredicted RBP13.16□□□□□ -0.3
SS18-203ENST00000415083 TET3O43151 1660 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms