RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 ERBINQ96RT1 1412 aa19.08■□□□□ 0.65
LIMS1-205ENST00000410093 CCER2I3L3R5 266 aa19.08■□□□□ 0.64
LIMS1-205ENST00000410093 DDX10Q13206 875 aaKnown RBP19.08■□□□□ 0.64
LIMS1-205ENST00000410093 RICTORQ6R327 1708 aa19.08■□□□□ 0.64
LIMS1-205ENST00000410093 RTEL1-TNFRSF6BF6WH68 1400 aa19.08■□□□□ 0.64
LIMS1-205ENST00000410093 MAGI2Q86UL8 1455 aa19.06■□□□□ 0.64
LIMS1-205ENST00000410093 IQGAP3Q86VI3 1631 aa19.06■□□□□ 0.64
LIMS1-205ENST00000410093 FAM135AQ9P2D6 1515 aa19.05■□□□□ 0.64
LIMS1-205ENST00000410093 FOXD1Q16676 465 aa19.05■□□□□ 0.64
LIMS1-205ENST00000410093 POGZQ7Z3K3 1410 aa19.05■□□□□ 0.64
LIMS1-205ENST00000410093 ANP32CO43423 234 aa19.05■□□□□ 0.64
LIMS1-205ENST00000410093 UHRF1BP1Q6BDS2 1440 aa19.04■□□□□ 0.64
LIMS1-205ENST00000410093 YTHDC1Q96MU7 727 aaKnown RBP19.04■□□□□ 0.64
LIMS1-205ENST00000410093 ZFYVE16Q7Z3T8 1539 aa19.03■□□□□ 0.64
LIMS1-205ENST00000410093 ZMYM4Q5VZL5 1548 aa19.03■□□□□ 0.64
LIMS1-205ENST00000410093 ARHGEF40Q8TER5 1519 aa19.03■□□□□ 0.64
LIMS1-205ENST00000410093 ZNF518AQ6AHZ1 1483 aa19.02■□□□□ 0.64
LIMS1-205ENST00000410093 HSPA5P11021 654 aaKnown RBP19■□□□□ 0.63
LIMS1-205ENST00000410093 AFAP1Q8N556 730 aa19■□□□□ 0.63
LIMS1-205ENST00000410093 YEATS2Q9ULM3 1422 aa18.99■□□□□ 0.63
LIMS1-205ENST00000410093 ATP10AO60312 1499 aa18.99■□□□□ 0.63
LIMS1-205ENST00000410093 SPATA31E1Q6ZUB1 1445 aa18.98■□□□□ 0.63
LIMS1-205ENST00000410093 RALGAPBQ86X10 1494 aa18.96■□□□□ 0.63
LIMS1-205ENST00000410093 GTF3C3Q9Y5Q9 886 aa18.95■□□□□ 0.62
LIMS1-205ENST00000410093 MLECQ14165 292 aa18.95■□□□□ 0.62
LIMS1-205ENST00000410093 NBPF8Q3BBV2 869 aa18.95■□□□□ 0.62
LIMS1-205ENST00000410093 BCORL1Q5H9F3 1711 aa18.94■□□□□ 0.62
LIMS1-205ENST00000410093 HIRIP3Q9BW71 556 aaPredicted RBP18.93■□□□□ 0.62
LIMS1-205ENST00000410093 ADAMTSL3P82987 1691 aa18.93■□□□□ 0.62
LIMS1-205ENST00000410093 CCDC144AA2RUR9 1427 aa18.93■□□□□ 0.62
LIMS1-205ENST00000410093 INO80Q9ULG1 1556 aaPredicted RBP18.92■□□□□ 0.62
LIMS1-205ENST00000410093 WASHC2AQ641Q2 1341 aa18.92■□□□□ 0.62
LIMS1-205ENST00000410093 EIF2AK4Q9P2K8 1649 aaKnown RBP18.92■□□□□ 0.62
LIMS1-205ENST00000410093 SPAG9O60271 1321 aaKnown RBP18.91■□□□□ 0.62
LIMS1-205ENST00000410093 PTPRMP28827 1452 aa18.91■□□□□ 0.62
LIMS1-205ENST00000410093 DEPDC5O75140 1603 aa18.91■□□□□ 0.62
LIMS1-205ENST00000410093 CNTLNQ9NXG0 1405 aa18.91■□□□□ 0.62
LIMS1-205ENST00000410093 TRAPPC8Q9Y2L5 1435 aa18.91■□□□□ 0.62
LIMS1-205ENST00000410093 CCDC7Q96M83 1385 aa18.91■□□□□ 0.62
LIMS1-205ENST00000410093 KDM5CP41229 1560 aa18.9■□□□□ 0.62
LIMS1-205ENST00000410093 HECW2Q9P2P5 1572 aa18.9■□□□□ 0.62
LIMS1-205ENST00000410093 PLPPR3Q6T4P5 718 aa18.89■□□□□ 0.61
LIMS1-205ENST00000410093 MLH3Q9UHC1 1453 aa18.88■□□□□ 0.61
LIMS1-205ENST00000410093 ATP7AQ04656 1500 aa18.88■□□□□ 0.61
LIMS1-205ENST00000410093 MADDQ8WXG6 1647 aa18.88■□□□□ 0.61
LIMS1-205ENST00000410093 LAMC1P11047 1609 aa18.87■□□□□ 0.61
LIMS1-205ENST00000410093 STAC3Q96MF2 364 aa18.86■□□□□ 0.61
LIMS1-205ENST00000410093 ESF1Q9H501 851 aaKnown RBP18.85■□□□□ 0.61
LIMS1-205ENST00000410093 ROCK2O75116 1388 aaKnown RBP18.85■□□□□ 0.61
LIMS1-205ENST00000410093 USP47Q96K76 1375 aa18.85■□□□□ 0.61
LIMS1-205ENST00000410093 RIMS1Q86UR5 1692 aaKnown RBP18.84■□□□□ 0.61
LIMS1-205ENST00000410093 TET3O43151 1660 aa18.83■□□□□ 0.61
LIMS1-205ENST00000410093 KANK1Q14678 1352 aa18.82■□□□□ 0.6
LIMS1-205ENST00000410093 NEURL4Q96JN8 1562 aa18.82■□□□□ 0.6
LIMS1-205ENST00000410093 DIP2CQ9Y2E4 1556 aa18.82■□□□□ 0.6
LIMS1-205ENST00000410093 TRPM1Q7Z4N2 1603 aa18.81■□□□□ 0.6
LIMS1-205ENST00000410093 PLA2R1Q13018 1463 aa18.81■□□□□ 0.6
LIMS1-205ENST00000410093 VWDEQ8N2E2 1590 aa18.81■□□□□ 0.6
LIMS1-205ENST00000410093 SIGLEC1Q9BZZ2 1709 aa18.79■□□□□ 0.6
LIMS1-205ENST00000410093 PRAG1Q86YV5 1406 aa18.79■□□□□ 0.6
LIMS1-205ENST00000410093 TRPM2O94759 1503 aa18.79■□□□□ 0.6
LIMS1-205ENST00000410093 ABCA6Q8N139 1617 aa18.79■□□□□ 0.6
LIMS1-205ENST00000410093 SPHKAPQ2M3C7 1700 aa18.79■□□□□ 0.6
LIMS1-205ENST00000410093 DHX29Q7Z478 1369 aaKnown RBP18.78■□□□□ 0.6
LIMS1-205ENST00000410093 PRDM15P57071 1507 aaPredicted RBP18.78■□□□□ 0.6
LIMS1-205ENST00000410093 REREQ9P2R6 1566 aa18.78■□□□□ 0.6
LIMS1-205ENST00000410093 E9PCH4 1651 aa18.78■□□□□ 0.6
LIMS1-205ENST00000410093 FER1L4A9Z1Z3 1794 aa18.78■□□□□ 0.6
LIMS1-205ENST00000410093 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.78■□□□□ 0.6
LIMS1-205ENST00000410093 KIF7Q2M1P5 1343 aa18.78■□□□□ 0.6
LIMS1-205ENST00000410093 CEP152O94986 1710 aa18.77■□□□□ 0.6
LIMS1-205ENST00000410093 DCAF11Q8TEB1 546 aa18.77■□□□□ 0.6
LIMS1-205ENST00000410093 GPRASP1Q5JY77 1395 aa18.77■□□□□ 0.6
LIMS1-205ENST00000410093 PTPRTO14522 1441 aa18.77■□□□□ 0.6
LIMS1-205ENST00000410093 KIDINS220Q9ULH0 1771 aa18.77■□□□□ 0.59
LIMS1-205ENST00000410093 CARD11Q9BXL7 1154 aa18.76■□□□□ 0.59
LIMS1-205ENST00000410093 AGLP35573 1532 aa18.75■□□□□ 0.59
LIMS1-205ENST00000410093 SENP3Q9H4L4 574 aaPredicted RBP18.74■□□□□ 0.59
LIMS1-205ENST00000410093 A2MP01023 1474 aa18.74■□□□□ 0.59
LIMS1-205ENST00000410093 RNF17Q9BXT8 1623 aaKnown RBP18.73■□□□□ 0.59
LIMS1-205ENST00000410093 C11orf95C9JLR9 678 aaPredicted RBP18.73■□□□□ 0.59
LIMS1-205ENST00000410093 ZNF326Q5BKZ1 582 aaKnown RBP18.73■□□□□ 0.59
LIMS1-205ENST00000410093 LMTK2Q8IWU2 1503 aa18.72■□□□□ 0.59
LIMS1-205ENST00000410093 CEBPAP49715 358 aaPredicted RBP18.71■□□□□ 0.59
LIMS1-205ENST00000410093 KTN1Q86UP2 1357 aaKnown RBP18.71■□□□□ 0.59
LIMS1-205ENST00000410093 PRKRIP1Q9H875 184 aaPredicted RBP18.7■□□□□ 0.58
LIMS1-205ENST00000410093 MROH1Q8NDA8 1641 aa18.68■□□□□ 0.58
LIMS1-205ENST00000410093 GGT6Q6P531 493 aa18.68■□□□□ 0.58
LIMS1-205ENST00000410093 KDM2AQ9Y2K7 1162 aa18.68■□□□□ 0.58
LIMS1-205ENST00000410093 KIAA1210Q9ULL0 1709 aa18.67■□□□□ 0.58
LIMS1-205ENST00000410093 LMTK3Q96Q04 1460 aa18.66■□□□□ 0.58
LIMS1-205ENST00000410093 EFCAB6Q5THR3 1501 aa18.66■□□□□ 0.58
LIMS1-205ENST00000410093 HSPA2P54652 639 aa18.64■□□□□ 0.58
LIMS1-205ENST00000410093 KIF1BO60333 1816 aa18.64■□□□□ 0.57
LIMS1-205ENST00000410093 CLTCL1P53675 1640 aa18.64■□□□□ 0.57
LIMS1-205ENST00000410093 PPP6R1Q9UPN7 881 aa18.64■□□□□ 0.57
LIMS1-205ENST00000410093 KIF3BO15066 747 aa18.63■□□□□ 0.57
LIMS1-205ENST00000410093 SLC24A1O60721 1099 aa18.62■□□□□ 0.57
LIMS1-205ENST00000410093 ST20-MTHFSA0A0A6YYL1 179 aa18.61■□□□□ 0.57
LIMS1-205ENST00000410093 RGL3Q3MIN7 710 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms