RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 CFDP1Q9UEE9 299 aaPredicted RBP19.26■□□□□ 0.67
SMARCB1-203ENST00000407082 CDC42BPAQ5VT25 1732 aa19.25■□□□□ 0.67
SMARCB1-203ENST00000407082 A2MP01023 1474 aa19.25■□□□□ 0.67
SMARCB1-203ENST00000407082 ZNF142P52746 1687 aaPredicted RBP19.24■□□□□ 0.67
SMARCB1-203ENST00000407082 CCNB3Q8WWL7 1395 aa19.23■□□□□ 0.67
SMARCB1-203ENST00000407082 NCOA2Q15596 1464 aa19.22■□□□□ 0.67
SMARCB1-203ENST00000407082 ATP7AQ04656 1500 aa19.22■□□□□ 0.67
SMARCB1-203ENST00000407082 FBXO31Q5XUX0 539 aaPredicted RBP19.21■□□□□ 0.67
SMARCB1-203ENST00000407082 A2ML1A8K2U0 1454 aa19.21■□□□□ 0.67
SMARCB1-203ENST00000407082 SHANK2Q9UPX8 1470 aa19.2■□□□□ 0.66
SMARCB1-203ENST00000407082 GPATCH8Q9UKJ3 1502 aaKnown RBP19.2■□□□□ 0.66
SMARCB1-203ENST00000407082 ANKLE2Q86XL3 938 aa19.19■□□□□ 0.66
SMARCB1-203ENST00000407082 CPS1P31327 1500 aa19.18■□□□□ 0.66
SMARCB1-203ENST00000407082 DNMT1P26358 1616 aaKnown RBP19.18■□□□□ 0.66
SMARCB1-203ENST00000407082 TNRQ92752 1358 aa19.16■□□□□ 0.66
SMARCB1-203ENST00000407082 PLXNC1O60486 1568 aa19.15■□□□□ 0.66
SMARCB1-203ENST00000407082 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.15■□□□□ 0.667e-16■■■■■ 28.1
SMARCB1-203ENST00000407082 KIAA1107Q9UPP5 1409 aa19.15■□□□□ 0.66
SMARCB1-203ENST00000407082 PLEKHH2Q8IVE3 1493 aa19.15■□□□□ 0.66
SMARCB1-203ENST00000407082 KIF3BO15066 747 aa19.14■□□□□ 0.65
SMARCB1-203ENST00000407082 THEMISQ8N1K5 641 aaPredicted RBP19.14■□□□□ 0.65
SMARCB1-203ENST00000407082 ZNF644Q9H582 1327 aaPredicted RBP19.14■□□□□ 0.65
SMARCB1-203ENST00000407082 INO80Q9ULG1 1556 aaPredicted RBP19.13■□□□□ 0.65
SMARCB1-203ENST00000407082 WASHC2CQ9Y4E1 1318 aa19.11■□□□□ 0.65
SMARCB1-203ENST00000407082 POLR1AO95602 1720 aaPredicted RBP19.11■□□□□ 0.65
SMARCB1-203ENST00000407082 MYOM3Q5VTT5 1437 aa19.1■□□□□ 0.65
SMARCB1-203ENST00000407082 NEURL4Q96JN8 1562 aa19.1■□□□□ 0.65
SMARCB1-203ENST00000407082 ADGBQ8N7X0 1667 aa19.08■□□□□ 0.65
SMARCB1-203ENST00000407082 NPHP4O75161 1426 aaPredicted RBP19.08■□□□□ 0.64
SMARCB1-203ENST00000407082 DHX29Q7Z478 1369 aaKnown RBP19.07■□□□□ 0.64
SMARCB1-203ENST00000407082 MIA2Q96PC5 1412 aa19.06■□□□□ 0.64
SMARCB1-203ENST00000407082 VWDEQ8N2E2 1590 aa19.06■□□□□ 0.64
SMARCB1-203ENST00000407082 FAM135AQ9P2D6 1515 aa19.04■□□□□ 0.64
SMARCB1-203ENST00000407082 FGD6Q6ZV73 1430 aa19.02■□□□□ 0.64
SMARCB1-203ENST00000407082 RRBP1Q9P2E9 1410 aaKnown RBP19.02■□□□□ 0.64
SMARCB1-203ENST00000407082 RGS17Q9UGC6 210 aaPredicted RBP19.02■□□□□ 0.64
SMARCB1-203ENST00000407082 ALKQ9UM73 1620 aa19.02■□□□□ 0.64
SMARCB1-203ENST00000407082 PZPP20742 1482 aa19.02■□□□□ 0.63
SMARCB1-203ENST00000407082 UGGT1Q9NYU2 1555 aa19.02■□□□□ 0.63
SMARCB1-203ENST00000407082 CLSPNQ9HAW4 1339 aa19.01■□□□□ 0.63
SMARCB1-203ENST00000407082 CAMSAP2Q08AD1 1489 aa19■□□□□ 0.63
SMARCB1-203ENST00000407082 RTEL1-TNFRSF6BF6WH68 1400 aa19■□□□□ 0.63
SMARCB1-203ENST00000407082 LRRC7Q96NW7 1537 aa18.99■□□□□ 0.63
SMARCB1-203ENST00000407082 KDM5DQ9BY66 1539 aa18.99■□□□□ 0.63
SMARCB1-203ENST00000407082 NLRP1Q9C000 1473 aa18.98■□□□□ 0.63
SMARCB1-203ENST00000407082 MBD5Q9P267 1494 aa18.98■□□□□ 0.63
SMARCB1-203ENST00000407082 FAM50AQ14320 339 aaKnown RBP18.98■□□□□ 0.63
SMARCB1-203ENST00000407082 MED14O60244 1454 aa18.97■□□□□ 0.63
SMARCB1-203ENST00000407082 PTPN23Q9H3S7 1636 aa18.97■□□□□ 0.63
SMARCB1-203ENST00000407082 IQGAP1P46940 1657 aa18.96■□□□□ 0.63
SMARCB1-203ENST00000407082 RSPH4AQ5TD94 716 aa18.96■□□□□ 0.63
SMARCB1-203ENST00000407082 DEPDC5O75140 1603 aa18.95■□□□□ 0.62
SMARCB1-203ENST00000407082 STRCP1A6NGW2 1772 aa18.93■□□□□ 0.62
SMARCB1-203ENST00000407082 POTEAQ6S8J7 498 aa18.93■□□□□ 0.62
SMARCB1-203ENST00000407082 TSPY4P0CV99 314 aa18.92■□□□□ 0.62
SMARCB1-203ENST00000407082 TSPY10P0CW01 314 aa18.92■□□□□ 0.62
SMARCB1-203ENST00000407082 RNF17Q9BXT8 1623 aaKnown RBP18.92■□□□□ 0.62
SMARCB1-203ENST00000407082 TXNDC2Q86VQ3 553 aa18.9■□□□□ 0.62
SMARCB1-203ENST00000407082 CCDC141Q6ZP82 1450 aa18.9■□□□□ 0.62
SMARCB1-203ENST00000407082 ARHGEF5Q12774 1597 aa18.89■□□□□ 0.61
SMARCB1-203ENST00000407082 SYNMO15061 1565 aa18.87■□□□□ 0.61
SMARCB1-203ENST00000407082 LTKP29376 864 aa18.86■□□□□ 0.61
SMARCB1-203ENST00000407082 ABCC5O15440 1437 aa18.85■□□□□ 0.61
SMARCB1-203ENST00000407082 DAPK1P53355 1430 aa18.85■□□□□ 0.61
SMARCB1-203ENST00000407082 CFAP65Q6ZU64 1925 aaKnown RBP18.85■□□□□ 0.61
SMARCB1-203ENST00000407082 EID1Q9Y6B2 187 aa18.85■□□□□ 0.61
SMARCB1-203ENST00000407082 ITGAEP38570 1179 aa18.84■□□□□ 0.61
SMARCB1-203ENST00000407082 CHIC2Q9UKJ5 165 aa18.83■□□□□ 0.6
SMARCB1-203ENST00000407082 SCAF11Q99590 1463 aaKnown RBP18.83■□□□□ 0.6
SMARCB1-203ENST00000407082 RBM33Q96EV2 1170 aaKnown RBP18.82■□□□□ 0.6
SMARCB1-203ENST00000407082 STAG3Q9UJ98 1225 aa18.82■□□□□ 0.6
SMARCB1-203ENST00000407082 ERVK-7P63135 1459 aa18.81■□□□□ 0.6
SMARCB1-203ENST00000407082 ABCC3O15438 1527 aa18.8■□□□□ 0.6
SMARCB1-203ENST00000407082 ZNF316A6NFI3 1004 aaPredicted RBP18.8■□□□□ 0.6
SMARCB1-203ENST00000407082 PROSER2Q86WR7 435 aaPredicted RBP18.8■□□□□ 0.6
SMARCB1-203ENST00000407082 FAM135BQ49AJ0 1406 aa18.8■□□□□ 0.6
SMARCB1-203ENST00000407082 ZC3H13Q5T200 1668 aaKnown RBP18.79■□□□□ 0.6
SMARCB1-203ENST00000407082 TMEM94Q12767 1356 aa18.78■□□□□ 0.6
SMARCB1-203ENST00000407082 CROCC2H7BZ55 1655 aa18.77■□□□□ 0.6
SMARCB1-203ENST00000407082 MAST1Q9Y2H9 1570 aa18.76■□□□□ 0.59
SMARCB1-203ENST00000407082 RRP7BPQ9NSQ0 103 aa18.76■□□□□ 0.59
SMARCB1-203ENST00000407082 UBR1Q8IWV7 1749 aa18.76■□□□□ 0.59
SMARCB1-203ENST00000407082 XIRP1Q702N8 1843 aaKnown RBP18.75■□□□□ 0.59
SMARCB1-203ENST00000407082 BCANQ96GW7 911 aa18.75■□□□□ 0.59
SMARCB1-203ENST00000407082 SLC26A8Q96RN1 970 aa18.75■□□□□ 0.59
SMARCB1-203ENST00000407082 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.75■□□□□ 0.592e-8■□□□□ 11.2
SMARCB1-203ENST00000407082 DHX57Q6P158 1386 aaKnown RBP18.74■□□□□ 0.59
SMARCB1-203ENST00000407082 ANKRD30AQ9BXX3 1397 aa18.74■□□□□ 0.59
SMARCB1-203ENST00000407082 DIEXFQ68CQ4 756 aaKnown RBP18.74■□□□□ 0.59
SMARCB1-203ENST00000407082 KCNA6P17658 529 aa18.73■□□□□ 0.59
SMARCB1-203ENST00000407082 SETD1AO15047 1707 aaKnown RBP18.72■□□□□ 0.59
SMARCB1-203ENST00000407082 CEP152O94986 1710 aa18.71■□□□□ 0.59
SMARCB1-203ENST00000407082 KIF15Q9NS87 1388 aa18.71■□□□□ 0.59
SMARCB1-203ENST00000407082 ROBO1Q9Y6N7 1651 aa18.71■□□□□ 0.59
SMARCB1-203ENST00000407082 ARHGAP23Q9P227 1491 aa18.71■□□□□ 0.59
SMARCB1-203ENST00000407082 SLIT1O75093 1534 aa18.7■□□□□ 0.58
SMARCB1-203ENST00000407082 MEX3CQ5U5Q3 659 aaKnown RBP18.7■□□□□ 0.58
SMARCB1-203ENST00000407082 TRIM52Q96A61 297 aa18.7■□□□□ 0.58
SMARCB1-203ENST00000407082 ADGRL2O95490 1459 aa18.7■□□□□ 0.58
SMARCB1-203ENST00000407082 ROCK1Q13464 1354 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 92.4 ms