RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 YEATS2Q9ULM3 1422 aa21.04■□□□□ 0.96
SKA1-202ENST00000398452 ADAMTSL3P82987 1691 aa21.03■□□□□ 0.96
SKA1-202ENST00000398452 HRCP23327 699 aa21.03■□□□□ 0.96
SKA1-202ENST00000398452 ARHGEF40Q8TER5 1519 aa21.02■□□□□ 0.96
SKA1-202ENST00000398452 BCORL1Q5H9F3 1711 aa21.01■□□□□ 0.95
SKA1-202ENST00000398452 ZFYVE16Q7Z3T8 1539 aa21■□□□□ 0.95
SKA1-202ENST00000398452 MADDQ8WXG6 1647 aa21■□□□□ 0.95
SKA1-202ENST00000398452 ATP7AQ04656 1500 aa20.99■□□□□ 0.95
SKA1-202ENST00000398452 GCC2Q8IWJ2 1684 aa20.99■□□□□ 0.95
SKA1-202ENST00000398452 ANKRD50Q9ULJ7 1429 aa20.98■□□□□ 0.95
SKA1-202ENST00000398452 TRIM52Q96A61 297 aa20.98■□□□□ 0.95
SKA1-202ENST00000398452 PLXNC1O60486 1568 aa20.97■□□□□ 0.95
SKA1-202ENST00000398452 MLH3Q9UHC1 1453 aa20.97■□□□□ 0.95
SKA1-202ENST00000398452 KCNA4P22459 653 aa20.97■□□□□ 0.95
SKA1-202ENST00000398452 ILDR1Q86SU0 546 aaPredicted RBP20.97■□□□□ 0.95
SKA1-202ENST00000398452 KDM5CP41229 1560 aa20.97■□□□□ 0.95
SKA1-202ENST00000398452 CCER1Q8TC90 406 aaPredicted RBP20.96■□□□□ 0.95
SKA1-202ENST00000398452 ZMYM4Q5VZL5 1548 aa20.95■□□□□ 0.94
SKA1-202ENST00000398452 DUOX2Q9NRD8 1548 aa20.95■□□□□ 0.94
SKA1-202ENST00000398452 RIMS1Q86UR5 1692 aaKnown RBP20.95■□□□□ 0.94
SKA1-202ENST00000398452 INO80Q9ULG1 1556 aaPredicted RBP20.94■□□□□ 0.94
SKA1-202ENST00000398452 MAGI2Q86UL8 1455 aa20.93■□□□□ 0.94
SKA1-202ENST00000398452 SIGLEC1Q9BZZ2 1709 aa20.92■□□□□ 0.94
SKA1-202ENST00000398452 ERBINQ96RT1 1412 aa20.92■□□□□ 0.94
SKA1-202ENST00000398452 DHX29Q7Z478 1369 aaKnown RBP20.88■□□□□ 0.93
SKA1-202ENST00000398452 KIDINS220Q9ULH0 1771 aa20.88■□□□□ 0.93
SKA1-202ENST00000398452 ATP10AO60312 1499 aa20.88■□□□□ 0.93
SKA1-202ENST00000398452 A2MP01023 1474 aa20.88■□□□□ 0.93
SKA1-202ENST00000398452 HSPA2P54652 639 aa20.86■□□□□ 0.93
SKA1-202ENST00000398452 KIF3BO15066 747 aa20.84■□□□□ 0.93
SKA1-202ENST00000398452 NUP155O75694 1391 aa20.83■□□□□ 0.92
SKA1-202ENST00000398452 CEBPAP49715 358 aaPredicted RBP20.82■□□□□ 0.92
SKA1-202ENST00000398452 KANK1Q14678 1352 aa20.82■□□□□ 0.92
SKA1-202ENST00000398452 SLC4A1APQ9BWU0 796 aaKnown RBP20.81■□□□□ 0.92
SKA1-202ENST00000398452 FER1L4A9Z1Z3 1794 aa20.81■□□□□ 0.92
SKA1-202ENST00000398452 DHX57Q6P158 1386 aaKnown RBP20.81■□□□□ 0.92
SKA1-202ENST00000398452 ABCA6Q8N139 1617 aa20.81■□□□□ 0.92
SKA1-202ENST00000398452 DIP2CQ9Y2E4 1556 aa20.8■□□□□ 0.92
SKA1-202ENST00000398452 LMTK3Q96Q04 1460 aa20.8■□□□□ 0.92
SKA1-202ENST00000398452 EIF2AK4Q9P2K8 1649 aaKnown RBP20.78■□□□□ 0.92
SKA1-202ENST00000398452 MPHOSPH9Q99550 1183 aa20.78■□□□□ 0.92
SKA1-202ENST00000398452 CLSPNQ9HAW4 1339 aa20.77■□□□□ 0.91
SKA1-202ENST00000398452 GGT6Q6P531 493 aa20.75■□□□□ 0.91
SKA1-202ENST00000398452 ZEB1P37275 1124 aaPredicted RBP20.74■□□□□ 0.91
SKA1-202ENST00000398452 ESF1Q9H501 851 aaKnown RBP20.74■□□□□ 0.91
SKA1-202ENST00000398452 UNC13BO14795 1591 aa20.72■□□□□ 0.91
SKA1-202ENST00000398452 KDM5DQ9BY66 1539 aa20.71■□□□□ 0.91
SKA1-202ENST00000398452 REREQ9P2R6 1566 aa20.71■□□□□ 0.91
SKA1-202ENST00000398452 PKD2Q13563 968 aa20.69■□□□□ 0.9
SKA1-202ENST00000398452 FAM135AQ9P2D6 1515 aa20.68■□□□□ 0.9
SKA1-202ENST00000398452 WASHC2CQ9Y4E1 1318 aa20.67■□□□□ 0.9
SKA1-202ENST00000398452 PZPP20742 1482 aa20.67■□□□□ 0.9
SKA1-202ENST00000398452 AGLP35573 1532 aa20.67■□□□□ 0.9
SKA1-202ENST00000398452 DEPDC5O75140 1603 aa20.65■□□□□ 0.9
SKA1-202ENST00000398452 RNF17Q9BXT8 1623 aaKnown RBP20.65■□□□□ 0.9
SKA1-202ENST00000398452 IQGAP3Q86VI3 1631 aa20.64■□□□□ 0.9
SKA1-202ENST00000398452 PRDM15P57071 1507 aaPredicted RBP20.64■□□□□ 0.9
SKA1-202ENST00000398452 FBXO41Q8TF61 875 aa20.62■□□□□ 0.89
SKA1-202ENST00000398452 U3KPZ7 1027 aaPredicted RBP20.61■□□□□ 0.89
SKA1-202ENST00000398452 UHRF1BP1Q6BDS2 1440 aa20.59■□□□□ 0.89
SKA1-202ENST00000398452 PREX1Q8TCU6 1659 aa20.58■□□□□ 0.89
SKA1-202ENST00000398452 NEUROD1Q13562 356 aa20.58■□□□□ 0.89
SKA1-202ENST00000398452 SETD1BQ9UPS6 1966 aaKnown RBP20.57■□□□□ 0.88
SKA1-202ENST00000398452 MROH1Q8NDA8 1641 aa20.57■□□□□ 0.88
SKA1-202ENST00000398452 VWDEQ8N2E2 1590 aa20.57■□□□□ 0.88
SKA1-202ENST00000398452 C3P01024 1663 aa20.57■□□□□ 0.88
SKA1-202ENST00000398452 TET3O43151 1660 aa20.56■□□□□ 0.88
SKA1-202ENST00000398452 LMTK2Q8IWU2 1503 aa20.56■□□□□ 0.88
SKA1-202ENST00000398452 ZC3H13Q5T200 1668 aaKnown RBP20.54■□□□□ 0.88
SKA1-202ENST00000398452 ANKRD30BQ9BXX2 1392 aa20.54■□□□□ 0.88
SKA1-202ENST00000398452 ABCC3O15438 1527 aa20.53■□□□□ 0.88
SKA1-202ENST00000398452 SIN3AQ96ST3 1273 aa20.53■□□□□ 0.88
SKA1-202ENST00000398452 ZMYM3Q14202 1370 aa20.51■□□□□ 0.87
SKA1-202ENST00000398452 TONSLQ96HA7 1378 aa20.51■□□□□ 0.87
SKA1-202ENST00000398452 CEP152O94986 1710 aa20.51■□□□□ 0.87
SKA1-202ENST00000398452 EFCAB6Q5THR3 1501 aa20.51■□□□□ 0.87
SKA1-202ENST00000398452 CCDC144AA2RUR9 1427 aa20.51■□□□□ 0.87
SKA1-202ENST00000398452 CNTLNQ9NXG0 1405 aa20.51■□□□□ 0.87
SKA1-202ENST00000398452 RPRD2Q5VT52 1461 aaKnown RBP20.5■□□□□ 0.87
SKA1-202ENST00000398452 CERKQ8TCT0 537 aa20.5■□□□□ 0.87
SKA1-202ENST00000398452 TIMELESSQ9UNS1 1208 aa20.5■□□□□ 0.87
SKA1-202ENST00000398452 CAMSAP1Q5T5Y3 1602 aa20.47■□□□□ 0.87
SKA1-202ENST00000398452 ARHGAP31Q2M1Z3 1444 aa20.46■□□□□ 0.87
SKA1-202ENST00000398452 E9PCH4 1651 aa20.46■□□□□ 0.87
SKA1-202ENST00000398452 CLTCQ00610 1675 aaKnown RBP20.46■□□□□ 0.87
SKA1-202ENST00000398452 STRCQ7RTU9 1775 aa20.46■□□□□ 0.87
SKA1-202ENST00000398452 NPATQ14207 1427 aa20.44■□□□□ 0.86
SKA1-202ENST00000398452 SLC4A2P04920 1241 aa20.43■□□□□ 0.86
SKA1-202ENST00000398452 PTPRTO14522 1441 aa20.42■□□□□ 0.86
SKA1-202ENST00000398452 MROH2AA6NES4 1674 aa20.4■□□□□ 0.86
SKA1-202ENST00000398452 TRPM2O94759 1503 aa20.4■□□□□ 0.86
SKA1-202ENST00000398452 SPHKAPQ2M3C7 1700 aa20.4■□□□□ 0.86
SKA1-202ENST00000398452 NCKAP5LQ9HCH0 1330 aa20.39■□□□□ 0.85
SKA1-202ENST00000398452 PLA2R1Q13018 1463 aa20.37■□□□□ 0.85
SKA1-202ENST00000398452 SLC52A1Q9NWF4 448 aa20.37■□□□□ 0.85
SKA1-202ENST00000398452 CHGAP10645 457 aaKnown RBP20.36■□□□□ 0.85
SKA1-202ENST00000398452 FBXO31Q5XUX0 539 aaPredicted RBP20.35■□□□□ 0.85
SKA1-202ENST00000398452 STAG3Q9UJ98 1225 aa20.35■□□□□ 0.85
SKA1-202ENST00000398452 NOS1P29475 1434 aa20.35■□□□□ 0.85
SKA1-202ENST00000398452 ERVK-7P63135 1459 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms