RNA–Protein interactions for RNA: ENST00000396354.5

NDE1-201, Transcript of nudE neurodevelopment protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NDE1, Length 3,221 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1-201ENST00000396354 ZCCHC11Q5TAX3 1644 aaKnown RBP12.84□□□□□ -0.35
NDE1-201ENST00000396354 NUP155O75694 1391 aa12.82□□□□□ -0.36
NDE1-201ENST00000396354 SPATA31E1Q6ZUB1 1445 aa12.82□□□□□ -0.36
NDE1-201ENST00000396354 UHRF1BP1LA0JNW5 1464 aa12.82□□□□□ -0.36
NDE1-201ENST00000396354 CCDC141Q6ZP82 1450 aa12.82□□□□□ -0.36
NDE1-201ENST00000396354 ARHGAP5Q13017 1502 aa12.82□□□□□ -0.36
NDE1-201ENST00000396354 KDM5DQ9BY66 1539 aa12.81□□□□□ -0.36
NDE1-201ENST00000396354 MYO5CQ9NQX4 1742 aa12.8□□□□□ -0.36
NDE1-201ENST00000396354 EIF4G2P78344 907 aaKnown RBP eCLIP12.8□□□□□ -0.36
NDE1-201ENST00000396354 BCORL1Q5H9F3 1711 aa12.79□□□□□ -0.36
NDE1-201ENST00000396354 CCER2I3L3R5 266 aa12.78□□□□□ -0.36
NDE1-201ENST00000396354 TSPY4P0CV99 314 aa12.78□□□□□ -0.36
NDE1-201ENST00000396354 TSPY10P0CW01 314 aa12.78□□□□□ -0.36
NDE1-201ENST00000396354 KDM2AQ9Y2K7 1162 aa12.78□□□□□ -0.36
NDE1-201ENST00000396354 FAM135AQ9P2D6 1515 aa12.77□□□□□ -0.37
NDE1-201ENST00000396354 CCDC7Q96M83 1385 aa12.77□□□□□ -0.37
NDE1-201ENST00000396354 NPM1P06748 294 aaKnown RBP eCLIP12.76□□□□□ -0.37
NDE1-201ENST00000396354 KIF7Q2M1P5 1343 aa12.75□□□□□ -0.37
NDE1-201ENST00000396354 PLEKHH2Q8IVE3 1493 aa12.75□□□□□ -0.37
NDE1-201ENST00000396354 PLA2R1Q13018 1463 aa12.75□□□□□ -0.37
NDE1-201ENST00000396354 CNTLNQ9NXG0 1405 aa12.75□□□□□ -0.37
NDE1-201ENST00000396354 MAST1Q9Y2H9 1570 aa12.74□□□□□ -0.37
NDE1-201ENST00000396354 TRAPPC8Q9Y2L5 1435 aa12.74□□□□□ -0.37
NDE1-201ENST00000396354 POLR1AO95602 1720 aaPredicted RBP12.73□□□□□ -0.37
NDE1-201ENST00000396354 KDM5CP41229 1560 aa12.73□□□□□ -0.37
NDE1-201ENST00000396354 ASXL2Q76L83 1435 aa12.73□□□□□ -0.37
NDE1-201ENST00000396354 UNC13BO14795 1591 aa12.73□□□□□ -0.37
NDE1-201ENST00000396354 ABCC1P33527 1531 aa12.72□□□□□ -0.37
NDE1-201ENST00000396354 PLCH2O75038 1416 aa12.72□□□□□ -0.37
NDE1-201ENST00000396354 PLXNC1O60486 1568 aa12.72□□□□□ -0.37
NDE1-201ENST00000396354 NBR1Q14596 966 aa12.71□□□□□ -0.37
NDE1-201ENST00000396354 WDR7Q9Y4E6 1490 aa12.71□□□□□ -0.37
NDE1-201ENST00000396354 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.71□□□□□ -0.381e-8■■□□□ 13.1
NDE1-201ENST00000396354 USP47Q96K76 1375 aa12.71□□□□□ -0.38
NDE1-201ENST00000396354 HOXD11P31277 338 aaPredicted RBP12.7□□□□□ -0.38
NDE1-201ENST00000396354 BCL11AQ9H165 835 aa12.69□□□□□ -0.38
NDE1-201ENST00000396354 UHRF1BP1Q6BDS2 1440 aa12.69□□□□□ -0.38
NDE1-201ENST00000396354 RALGAPBQ86X10 1494 aa12.68□□□□□ -0.38
NDE1-201ENST00000396354 IQGAP3Q86VI3 1631 aa12.68□□□□□ -0.38
NDE1-201ENST00000396354 AFAP1Q8N556 730 aa12.67□□□□□ -0.38
NDE1-201ENST00000396354 PRKRIP1Q9H875 184 aaPredicted RBP12.67□□□□□ -0.38
NDE1-201ENST00000396354 DCAF11Q8TEB1 546 aa12.66□□□□□ -0.38
NDE1-201ENST00000396354 MAGI2Q86UL8 1455 aa12.66□□□□□ -0.38
NDE1-201ENST00000396354 NPM2Q86SE8 214 aaKnown RBP12.66□□□□□ -0.38
NDE1-201ENST00000396354 DHX29Q7Z478 1369 aaKnown RBP12.66□□□□□ -0.38
NDE1-201ENST00000396354 DNAJC5Q9H3Z4 198 aa12.66□□□□□ -0.38
NDE1-201ENST00000396354 ZFYVE16Q7Z3T8 1539 aa12.65□□□□□ -0.38
NDE1-201ENST00000396354 RGL3Q3MIN7 710 aa12.65□□□□□ -0.38
NDE1-201ENST00000396354 DMRT2Q9Y5R5 561 aa12.65□□□□□ -0.38
NDE1-201ENST00000396354 DUOX2Q9NRD8 1548 aa12.65□□□□□ -0.38
NDE1-201ENST00000396354 A2MP01023 1474 aa12.64□□□□□ -0.39
NDE1-201ENST00000396354 PRKCSHP14314 528 aaPredicted RBP12.64□□□□□ -0.39
NDE1-201ENST00000396354 RSPH4AQ5TD94 716 aa12.64□□□□□ -0.39
NDE1-201ENST00000396354 TRPM1Q7Z4N2 1603 aa12.63□□□□□ -0.39
NDE1-201ENST00000396354 NBPF1Q3BBV0 1214 aa12.63□□□□□ -0.39
NDE1-201ENST00000396354 EFCAB2Q5VUJ9 269 aa12.63□□□□□ -0.39
NDE1-201ENST00000396354 ABCA9Q8IUA7 1624 aa12.63□□□□□ -0.39
NDE1-201ENST00000396354 PRAG1Q86YV5 1406 aa12.62□□□□□ -0.39
NDE1-201ENST00000396354 CARD11Q9BXL7 1154 aa12.62□□□□□ -0.39
NDE1-201ENST00000396354 CCDC144AA2RUR9 1427 aa12.61□□□□□ -0.39
NDE1-201ENST00000396354 ST20-MTHFSA0A0A6YYL1 179 aa12.61□□□□□ -0.39
NDE1-201ENST00000396354 ERBINQ96RT1 1412 aa12.61□□□□□ -0.39
NDE1-201ENST00000396354 E9PCH4 1651 aa12.61□□□□□ -0.39
NDE1-201ENST00000396354 TMC1Q8TDI8 760 aa12.61□□□□□ -0.39
NDE1-201ENST00000396354 CCDC136Q96JN2 1154 aa12.6□□□□□ -0.39
NDE1-201ENST00000396354 SLC4A2P04920 1241 aa12.6□□□□□ -0.39
NDE1-201ENST00000396354 PPP4R2Q9NY27 417 aa12.6□□□□□ -0.39
NDE1-201ENST00000396354 FANCAO15360 1455 aa12.59□□□□□ -0.39
NDE1-201ENST00000396354 ATXN8OSP0DMR3 200 aa12.59□□□□□ -0.39
NDE1-201ENST00000396354 AMER1Q5JTC6 1135 aaPredicted RBP12.59□□□□□ -0.39
NDE1-201ENST00000396354 INO80Q9ULG1 1556 aaPredicted RBP12.59□□□□□ -0.39
NDE1-201ENST00000396354 FAM69CQ0P6D2 419 aa12.58□□□□□ -0.39
NDE1-201ENST00000396354 SPAG9O60271 1321 aaKnown RBP12.58□□□□□ -0.4
NDE1-201ENST00000396354 ARAP3Q8WWN8 1544 aa12.58□□□□□ -0.4
NDE1-201ENST00000396354 ROCK2O75116 1388 aaKnown RBP12.57□□□□□ -0.4
NDE1-201ENST00000396354 CD109Q6YHK3 1445 aa12.57□□□□□ -0.4
NDE1-201ENST00000396354 DEPDC5O75140 1603 aa12.56□□□□□ -0.4
NDE1-201ENST00000396354 ATP7AQ04656 1500 aa12.56□□□□□ -0.4
NDE1-201ENST00000396354 MROH1Q8NDA8 1641 aa12.56□□□□□ -0.4
NDE1-201ENST00000396354 ATP10AO60312 1499 aa12.56□□□□□ -0.4
NDE1-201ENST00000396354 SKAP1Q86WV1 359 aa12.55□□□□□ -0.4
NDE1-201ENST00000396354 SCAPERQ9BY12 1400 aa12.55□□□□□ -0.4
NDE1-201ENST00000396354 DIP2BQ9P265 1576 aa12.55□□□□□ -0.4
NDE1-201ENST00000396354 ADGRL1O94910 1474 aa12.55□□□□□ -0.4
NDE1-201ENST00000396354 UGGT1Q9NYU2 1555 aa12.54□□□□□ -0.4
NDE1-201ENST00000396354 CLTCL1P53675 1640 aa12.54□□□□□ -0.4
NDE1-201ENST00000396354 TSPOAP1O95153 1857 aa12.53□□□□□ -0.4
NDE1-201ENST00000396354 KIDINS220Q9ULH0 1771 aa12.53□□□□□ -0.4
NDE1-201ENST00000396354 RTEL1-TNFRSF6BF6WH68 1400 aa12.53□□□□□ -0.4
NDE1-201ENST00000396354 PAK3O75914 559 aaPredicted RBP12.53□□□□□ -0.4
NDE1-201ENST00000396354 PRDM15P57071 1507 aaPredicted RBP12.53□□□□□ -0.4
NDE1-201ENST00000396354 CC2D1BQ5T0F9 858 aaKnown RBP12.52□□□□□ -0.4
NDE1-201ENST00000396354 DISP3Q9P2K9 1392 aa12.52□□□□□ -0.4
NDE1-201ENST00000396354 VWDEQ8N2E2 1590 aa12.52□□□□□ -0.41
NDE1-201ENST00000396354 SPHKAPQ2M3C7 1700 aa12.52□□□□□ -0.41
NDE1-201ENST00000396354 GPRASP1Q5JY77 1395 aa12.52□□□□□ -0.41
NDE1-201ENST00000396354 RNF17Q9BXT8 1623 aaKnown RBP12.51□□□□□ -0.41
NDE1-201ENST00000396354 TESK2Q96S53 571 aa12.51□□□□□ -0.41
NDE1-201ENST00000396354 RTN4Q9NQC3 1192 aaKnown RBP12.51□□□□□ -0.41
NDE1-201ENST00000396354 MADDQ8WXG6 1647 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms