RNA–Protein interactions for RNA: ENST00000380443.5

VPS16-201, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 1 (best)

Gene VPS16, Length 1,825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-201ENST00000380443 MAGI2Q86UL8 1455 aa32.36■■■□□ 2.77
VPS16-201ENST00000380443 SPATA31E1Q6ZUB1 1445 aa32.36■■■□□ 2.77
VPS16-201ENST00000380443 WASHC2AQ641Q2 1341 aa32.33■■■□□ 2.77
VPS16-201ENST00000380443 NEO1Q92859 1461 aa32.33■■■□□ 2.77
VPS16-201ENST00000380443 TRAPPC8Q9Y2L5 1435 aa32.32■■■□□ 2.76
VPS16-201ENST00000380443 CFAP74Q9C0B2 1584 aa32.3■■■□□ 2.76
VPS16-201ENST00000380443 FANCAO15360 1455 aa32.28■■■□□ 2.76
VPS16-201ENST00000380443 SPAG9O60271 1321 aaKnown RBP32.28■■■□□ 2.76
VPS16-201ENST00000380443 POLR1AO95602 1720 aaPredicted RBP32.27■■■□□ 2.76
VPS16-201ENST00000380443 CCDC7Q96M83 1385 aa32.26■■■□□ 2.75
VPS16-201ENST00000380443 ATP10AO60312 1499 aa32.25■■■□□ 2.75
VPS16-201ENST00000380443 RALGAPBQ86X10 1494 aa32.25■■■□□ 2.75
VPS16-201ENST00000380443 CCDC144AA2RUR9 1427 aa32.24■■■□□ 2.75
VPS16-201ENST00000380443 ZFYVE16Q7Z3T8 1539 aa32.23■■■□□ 2.75
VPS16-201ENST00000380443 CNTLNQ9NXG0 1405 aa32.22■■■□□ 2.75
VPS16-201ENST00000380443 COL17A1Q9UMD9 1497 aaPredicted RBP32.2■■■□□ 2.75
VPS16-201ENST00000380443 ARID4BQ4LE39 1312 aaPredicted RBP32.19■■■□□ 2.74
VPS16-201ENST00000380443 INO80Q9ULG1 1556 aaPredicted RBP32.16■■■□□ 2.74
VPS16-201ENST00000380443 USP47Q96K76 1375 aa32.15■■■□□ 2.74
VPS16-201ENST00000380443 GRWD1Q9BQ67 446 aaKnown RBP eCLIP32.15■■■□□ 2.74
VPS16-201ENST00000380443 ADGRL1O94910 1474 aa32.15■■■□□ 2.74
VPS16-201ENST00000380443 PLA2R1Q13018 1463 aa32.15■■■□□ 2.74
VPS16-201ENST00000380443 ATP7AQ04656 1500 aa32.14■■■□□ 2.74
VPS16-201ENST00000380443 KDM5CP41229 1560 aa32.14■■■□□ 2.73
VPS16-201ENST00000380443 AFAP1Q8N556 730 aa32.13■■■□□ 2.73
VPS16-201ENST00000380443 SCAPERQ9BY12 1400 aa32.11■■■□□ 2.73
VPS16-201ENST00000380443 DEPDC5O75140 1603 aa32.1■■■□□ 2.73
VPS16-201ENST00000380443 C11orf95C9JLR9 678 aaPredicted RBP32.1■■■□□ 2.73
VPS16-201ENST00000380443 KIF7Q2M1P5 1343 aa32.09■■■□□ 2.73
VPS16-201ENST00000380443 DCAF11Q8TEB1 546 aa32.08■■■□□ 2.73
VPS16-201ENST00000380443 ZNF326Q5BKZ1 582 aaKnown RBP32.07■■■□□ 2.73
VPS16-201ENST00000380443 EIF2AK4Q9P2K8 1649 aaKnown RBP32.07■■■□□ 2.72
VPS16-201ENST00000380443 RAPGEF3O95398 923 aa32.05■■■□□ 2.72
VPS16-201ENST00000380443 CARD11Q9BXL7 1154 aa32.03■■■□□ 2.72
VPS16-201ENST00000380443 KANK1Q14678 1352 aa32.03■■■□□ 2.72
VPS16-201ENST00000380443 PRAG1Q86YV5 1406 aa32.02■■■□□ 2.72
VPS16-201ENST00000380443 DHX29Q7Z478 1369 aaKnown RBP32.02■■■□□ 2.72
VPS16-201ENST00000380443 ZNF518AQ6AHZ1 1483 aa32.01■■■□□ 2.71
VPS16-201ENST00000380443 ROCK2O75116 1388 aaKnown RBP32■■■□□ 2.71
VPS16-201ENST00000380443 RICTORQ6R327 1708 aa31.99■■■□□ 2.71
VPS16-201ENST00000380443 VWDEQ8N2E2 1590 aa31.99■■■□□ 2.71
VPS16-201ENST00000380443 KDM2AQ9Y2K7 1162 aa31.99■■■□□ 2.71
VPS16-201ENST00000380443 FRMPD1Q5SYB0 1578 aa31.98■■■□□ 2.71
VPS16-201ENST00000380443 POGZQ7Z3K3 1410 aa31.98■■■□□ 2.71
VPS16-201ENST00000380443 TET3O43151 1660 aa31.98■■■□□ 2.71
VPS16-201ENST00000380443 STAC3Q96MF2 364 aa31.98■■■□□ 2.71
VPS16-201ENST00000380443 A2MP01023 1474 aa31.97■■■□□ 2.71
VPS16-201ENST00000380443 LAMC1P11047 1609 aa31.97■■■□□ 2.71
VPS16-201ENST00000380443 TRPM1Q7Z4N2 1603 aa31.97■■■□□ 2.71
VPS16-201ENST00000380443 PTPRTO14522 1441 aa31.96■■■□□ 2.71
VPS16-201ENST00000380443 GPRASP1Q5JY77 1395 aa31.96■■■□□ 2.71
VPS16-201ENST00000380443 E9PCH4 1651 aa31.95■■■□□ 2.71
VPS16-201ENST00000380443 BCORL1Q5H9F3 1711 aa31.95■■■□□ 2.7
VPS16-201ENST00000380443 TRPM2O94759 1503 aa31.94■■■□□ 2.7
VPS16-201ENST00000380443 PRDM15P57071 1507 aaPredicted RBP31.93■■■□□ 2.7
VPS16-201ENST00000380443 PRKRIP1Q9H875 184 aaPredicted RBP31.91■■■□□ 2.7
VPS16-201ENST00000380443 ZMYM4Q5VZL5 1548 aa31.9■■■□□ 2.7
VPS16-201ENST00000380443 KIDINS220Q9ULH0 1771 aa31.9■■■□□ 2.7
VPS16-201ENST00000380443 SPHKAPQ2M3C7 1700 aa31.88■■■□□ 2.69
VPS16-201ENST00000380443 NEURL4Q96JN8 1562 aa31.88■■■□□ 2.69
VPS16-201ENST00000380443 MLH3Q9UHC1 1453 aa31.88■■■□□ 2.69
VPS16-201ENST00000380443 MYT1LQ9UL68 1186 aa31.87■■■□□ 2.69
VPS16-201ENST00000380443 RGL3Q3MIN7 710 aa31.86■■■□□ 2.69
VPS16-201ENST00000380443 KIF3BO15066 747 aa31.85■■■□□ 2.69
VPS16-201ENST00000380443 CEP152O94986 1710 aa31.83■■■□□ 2.69
VPS16-201ENST00000380443 LMTK2Q8IWU2 1503 aa31.82■■■□□ 2.68
VPS16-201ENST00000380443 MROH1Q8NDA8 1641 aa31.82■■■□□ 2.68
VPS16-201ENST00000380443 ST20-MTHFSA0A0A6YYL1 179 aa31.82■■■□□ 2.68
VPS16-201ENST00000380443 RNF17Q9BXT8 1623 aaKnown RBP31.8■■■□□ 2.68
VPS16-201ENST00000380443 ARHGEF40Q8TER5 1519 aa31.79■■■□□ 2.68
VPS16-201ENST00000380443 HECW2Q9P2P5 1572 aa31.78■■■□□ 2.68
VPS16-201ENST00000380443 CLTCL1P53675 1640 aa31.74■■■□□ 2.67
VPS16-201ENST00000380443 YEATS2Q9ULM3 1422 aa31.74■■■□□ 2.67
VPS16-201ENST00000380443 EFCAB6Q5THR3 1501 aa31.73■■■□□ 2.67
VPS16-201ENST00000380443 KTN1Q86UP2 1357 aaKnown RBP31.72■■■□□ 2.67
VPS16-201ENST00000380443 NBPF1Q3BBV0 1214 aa31.7■■■□□ 2.66
VPS16-201ENST00000380443 MADDQ8WXG6 1647 aa31.69■■■□□ 2.66
VPS16-201ENST00000380443 POLR3GLQ9BT43 218 aa31.65■■■□□ 2.66
VPS16-201ENST00000380443 MRS2Q9HD23 443 aa31.65■■■□□ 2.66
VPS16-201ENST00000380443 KIAA1210Q9ULL0 1709 aa31.62■■■□□ 2.65
VPS16-201ENST00000380443 DIP2CQ9Y2E4 1556 aa31.62■■■□□ 2.65
VPS16-201ENST00000380443 HNRNPUQ00839 825 aaKnown RBP eCLIP31.61■■■□□ 2.65
VPS16-201ENST00000380443 SUPT16HQ9Y5B9 1047 aaKnown RBP31.61■■■□□ 2.65
VPS16-201ENST00000380443 ABCA6Q8N139 1617 aa31.61■■■□□ 2.65
VPS16-201ENST00000380443 MYOM2P54296 1465 aa31.59■■■□□ 2.65
VPS16-201ENST00000380443 KIF1BO60333 1816 aa31.59■■■□□ 2.65
VPS16-201ENST00000380443 TESK2Q96S53 571 aa31.58■■■□□ 2.65
VPS16-201ENST00000380443 REREQ9P2R6 1566 aa31.57■■■□□ 2.64
VPS16-201ENST00000380443 TMF1P82094 1093 aa31.56■■■□□ 2.64
VPS16-201ENST00000380443 RALBP1Q15311 655 aa31.56■■■□□ 2.64
VPS16-201ENST00000380443 CCDC184Q52MB2 194 aa31.56■■■□□ 2.64
VPS16-201ENST00000380443 IQGAP1P46940 1657 aa31.55■■■□□ 2.64
VPS16-201ENST00000380443 WASHC2CQ9Y4E1 1318 aa31.55■■■□□ 2.64
VPS16-201ENST00000380443 SCAF11Q99590 1463 aaKnown RBP31.53■■■□□ 2.64
VPS16-201ENST00000380443 SLC24A1O60721 1099 aa31.52■■■□□ 2.64
VPS16-201ENST00000380443 KDM4FA0A1W2PPD8 638 aa31.49■■■□□ 2.63
VPS16-201ENST00000380443 PELP1Q8IZL8 1130 aaKnown RBP31.49■■■□□ 2.63
VPS16-201ENST00000380443 ABCC3O15438 1527 aa31.49■■■□□ 2.63
VPS16-201ENST00000380443 EIF3AQ14152 1382 aaKnown RBP31.48■■■□□ 2.63
VPS16-201ENST00000380443 NEFLP07196 543 aa31.47■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms