RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 DCAF11Q8TEB1 546 aa6.17□□□□□ -1.42
PCDH9-201ENST00000377861 ZRSR1Q15695 479 aaKnown RBP6.17□□□□□ -1.42
PCDH9-201ENST00000377861 CHMP5Q9NZZ3 219 aa6.17□□□□□ -1.42
PCDH9-201ENST00000377861 DDX19BQ9UMR2 479 aa6.16□□□□□ -1.42
PCDH9-201ENST00000377861 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.16□□□□□ -1.42
PCDH9-201ENST00000377861 CCDC144AA2RUR9 1427 aa6.16□□□□□ -1.42
PCDH9-201ENST00000377861 MRE11P49959 708 aa6.16□□□□□ -1.42
PCDH9-201ENST00000377861 GPATCH3Q96I76 525 aa6.16□□□□□ -1.42
PCDH9-201ENST00000377861 ERCC6Q03468 1493 aa6.15□□□□□ -1.42
PCDH9-201ENST00000377861 HSCBQ8IWL3 235 aa6.15□□□□□ -1.42
PCDH9-201ENST00000377861 HSP90B1P14625 803 aaKnown RBP6.15□□□□□ -1.42
PCDH9-201ENST00000377861 FAM193AP78312 1265 aa6.15□□□□□ -1.42
PCDH9-201ENST00000377861 HDGFL2Q7Z4V5 671 aaPredicted RBP6.15□□□□□ -1.42
PCDH9-201ENST00000377861 NOL10Q9BSC4 688 aaKnown RBP6.15□□□□□ -1.42
PCDH9-201ENST00000377861 NAP1L2Q9ULW6 460 aaPredicted RBP6.15□□□□□ -1.43
PCDH9-201ENST00000377861 NPC1L1Q9UHC9 1359 aa6.15□□□□□ -1.43
PCDH9-201ENST00000377861 SRCIN1Q9C0H9 1055 aa6.15□□□□□ -1.43
PCDH9-201ENST00000377861 NUP155O75694 1391 aa6.15□□□□□ -1.43
PCDH9-201ENST00000377861 PDCP20941 246 aa6.15□□□□□ -1.43
PCDH9-201ENST00000377861 CCDC27Q2M243 656 aa6.15□□□□□ -1.43
PCDH9-201ENST00000377861 P3H3Q8IVL6 736 aa6.14□□□□□ -1.43
PCDH9-201ENST00000377861 STAG3Q9UJ98 1225 aa6.14□□□□□ -1.43
PCDH9-201ENST00000377861 GCC1Q96CN9 775 aa6.14□□□□□ -1.43
PCDH9-201ENST00000377861 ZNF777Q9ULD5 760 aaPredicted RBP6.14□□□□□ -1.43
PCDH9-201ENST00000377861 MORC1Q86VD1 984 aa6.14□□□□□ -1.43
PCDH9-201ENST00000377861 RRP7BPQ9NSQ0 103 aa6.14□□□□□ -1.43
PCDH9-201ENST00000377861 ARHGAP45Q92619 1136 aa6.14□□□□□ -1.43
PCDH9-201ENST00000377861 PDE4AP27815 886 aa6.14□□□□□ -1.43
PCDH9-201ENST00000377861 FYCO1Q9BQS8 1478 aa6.14□□□□□ -1.43
PCDH9-201ENST00000377861 API5Q9BZZ5 524 aaKnown RBP6.13□□□□□ -1.43
PCDH9-201ENST00000377861 IL16Q14005 1332 aa6.13□□□□□ -1.43
PCDH9-201ENST00000377861 PEG3Q9GZU2 1588 aa6.13□□□□□ -1.43
PCDH9-201ENST00000377861 SMG6Q86US8 1419 aaKnown RBP6.13□□□□□ -1.43
PCDH9-201ENST00000377861 TUBBP07437 444 aa6.13□□□□□ -1.43
PCDH9-201ENST00000377861 RUFY2Q8WXA3 655 aa6.13□□□□□ -1.43
PCDH9-201ENST00000377861 EFCAB5A4FU69 1503 aa6.13□□□□□ -1.43
PCDH9-201ENST00000377861 ZNF326Q5BKZ1 582 aaKnown RBP6.12□□□□□ -1.43
PCDH9-201ENST00000377861 MBD3O95983 291 aa6.12□□□□□ -1.43
PCDH9-201ENST00000377861 SIN3AQ96ST3 1273 aa6.12□□□□□ -1.43
PCDH9-201ENST00000377861 KIAA1211Q6ZU35 1233 aa6.12□□□□□ -1.43
PCDH9-201ENST00000377861 KIF7Q2M1P5 1343 aa6.12□□□□□ -1.43
PCDH9-201ENST00000377861 TMED8Q6PL24 325 aaPredicted RBP6.12□□□□□ -1.43
PCDH9-201ENST00000377861 ANKRD30BQ9BXX2 1392 aa6.12□□□□□ -1.43
PCDH9-201ENST00000377861 LRRC9Q6ZRR7 1453 aa6.12□□□□□ -1.43
PCDH9-201ENST00000377861 FBLN2P98095 1184 aa6.12□□□□□ -1.43
PCDH9-201ENST00000377861 MSNP26038 577 aaKnown RBP6.12□□□□□ -1.43
PCDH9-201ENST00000377861 TULP1O00294 542 aaPredicted RBP6.12□□□□□ -1.43
PCDH9-201ENST00000377861 CUX1P39880 1505 aa6.12□□□□□ -1.43
PCDH9-201ENST00000377861 CHIC2Q9UKJ5 165 aa6.12□□□□□ -1.43
PCDH9-201ENST00000377861 RUNDC1Q96C34 613 aa6.11□□□□□ -1.43
PCDH9-201ENST00000377861 FGD6Q6ZV73 1430 aa6.11□□□□□ -1.43
PCDH9-201ENST00000377861 FCHSD2O94868 740 aa6.11□□□□□ -1.43
PCDH9-201ENST00000377861 FAM43AQ8N2R8 423 aa6.11□□□□□ -1.43
PCDH9-201ENST00000377861 TPM2P07951 284 aa6.11□□□□□ -1.43
PCDH9-201ENST00000377861 C11orf95C9JLR9 678 aaPredicted RBP6.11□□□□□ -1.43
PCDH9-201ENST00000377861 FGD5Q6ZNL6 1462 aa6.11□□□□□ -1.43
PCDH9-201ENST00000377861 GOLGA6L4A6NEF3 574 aa6.11□□□□□ -1.43
PCDH9-201ENST00000377861 TPM4P67936 248 aa6.11□□□□□ -1.43
PCDH9-201ENST00000377861 BACH2Q9BYV9 841 aa6.11□□□□□ -1.43
PCDH9-201ENST00000377861 DHX37Q8IY37 1157 aaKnown RBP6.11□□□□□ -1.43
PCDH9-201ENST00000377861 HIP1O00291 1037 aa6.11□□□□□ -1.43
PCDH9-201ENST00000377861 HOXA7P31268 230 aaPredicted RBP6.1□□□□□ -1.43
PCDH9-201ENST00000377861 DIAPH3Q9NSV4 1193 aa6.1□□□□□ -1.43
PCDH9-201ENST00000377861 KIF21BO75037 1637 aa6.1□□□□□ -1.43
PCDH9-201ENST00000377861 ZKSCAN2Q63HK3 967 aa6.1□□□□□ -1.43
PCDH9-201ENST00000377861 EVC2Q86UK5 1308 aa6.1□□□□□ -1.43
PCDH9-201ENST00000377861 CCP110O43303 1012 aa6.1□□□□□ -1.43
PCDH9-201ENST00000377861 NPM2Q86SE8 214 aaKnown RBP6.1□□□□□ -1.43
PCDH9-201ENST00000377861 RRP9O43818 475 aaKnown RBP6.1□□□□□ -1.43
PCDH9-201ENST00000377861 KDM2AQ9Y2K7 1162 aa6.1□□□□□ -1.43
PCDH9-201ENST00000377861 GOLGA6L1Q8N7Z2 621 aa6.1□□□□□ -1.43
PCDH9-201ENST00000377861 GTPBP4Q9BZE4 634 aaKnown RBP6.09□□□□□ -1.43
PCDH9-201ENST00000377861 DEKP35659 375 aaKnown RBP6.09□□□□□ -1.43
PCDH9-201ENST00000377861 HOOK1Q9UJC3 728 aaKnown RBP6.09□□□□□ -1.43
PCDH9-201ENST00000377861 CENPJQ9HC77 1338 aaPredicted RBP6.09□□□□□ -1.43
PCDH9-201ENST00000377861 KIF2AO00139 706 aaPredicted RBP6.09□□□□□ -1.43
PCDH9-201ENST00000377861 RNF123Q5XPI4 1314 aa6.09□□□□□ -1.43
PCDH9-201ENST00000377861 RRP1P56182 461 aaKnown RBP6.09□□□□□ -1.43
PCDH9-201ENST00000377861 GPS2Q13227 327 aa6.09□□□□□ -1.43
PCDH9-201ENST00000377861 ST20-MTHFSA0A0A6YYL1 179 aa6.09□□□□□ -1.43
PCDH9-201ENST00000377861 BABAM1Q9NWV8 329 aa6.09□□□□□ -1.43
PCDH9-201ENST00000377861 GNAI1P63096 354 aa6.09□□□□□ -1.43
PCDH9-201ENST00000377861 DHX16O60231 1041 aaKnown RBP6.09□□□□□ -1.43
PCDH9-201ENST00000377861 CREBRFQ8IUR6 639 aa6.09□□□□□ -1.43
PCDH9-201ENST00000377861 ANKRD1Q15327 319 aa6.08□□□□□ -1.44
PCDH9-201ENST00000377861 HMGXB3Q12766 1538 aa6.08□□□□□ -1.44
PCDH9-201ENST00000377861 ALDH1L2Q3SY69 923 aa6.08□□□□□ -1.44
PCDH9-201ENST00000377861 ABCC11Q96J66 1382 aa6.08□□□□□ -1.44
PCDH9-201ENST00000377861 PODXL2Q9NZ53 605 aa6.08□□□□□ -1.44
PCDH9-201ENST00000377861 TPM1P09493 284 aa6.08□□□□□ -1.44
PCDH9-201ENST00000377861 RTF1Q92541 710 aaKnown RBP6.08□□□□□ -1.44
PCDH9-201ENST00000377861 RNF20Q5VTR2 975 aa6.08□□□□□ -1.44
PCDH9-201ENST00000377861 FHOD3Q2V2M9 1422 aa6.07□□□□□ -1.44
PCDH9-201ENST00000377861 MFAP1P55081 439 aaKnown RBP6.07□□□□□ -1.44
PCDH9-201ENST00000377861 RPAP2Q8IXW5 612 aaPredicted RBP6.07□□□□□ -1.44
PCDH9-201ENST00000377861 SMC4Q9NTJ3 1288 aa6.07□□□□□ -1.44
PCDH9-201ENST00000377861 PAXIP1Q6ZW49 1069 aaPredicted RBP6.07□□□□□ -1.44
PCDH9-201ENST00000377861 A6NNZ2 444 aa6.07□□□□□ -1.44
PCDH9-201ENST00000377861 TUBB8Q3ZCM7 444 aa6.07□□□□□ -1.44
PCDH9-201ENST00000377861 ANKRD50Q9ULJ7 1429 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms