RNA–Protein interactions for RNA: ENST00000372417.1

YIPF3-201, Transcript of Yip1 domain family member 3, humanhuman

TSL 2

Gene YIPF3, Length 406 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YIPF3-201ENST00000372417 UPF1Q92900 1129 aaKnown RBP eCLIP13.42□□□□□ -0.26
YIPF3-201ENST00000372417 ROBO1Q9Y6N7 1651 aa13.41□□□□□ -0.26
YIPF3-201ENST00000372417 FMN1Q68DA7 1419 aa13.41□□□□□ -0.26
YIPF3-201ENST00000372417 GGT6Q6P531 493 aa13.41□□□□□ -0.26
YIPF3-201ENST00000372417 TNRQ92752 1358 aa13.41□□□□□ -0.26
YIPF3-201ENST00000372417 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.41□□□□□ -0.26
YIPF3-201ENST00000372417 UGGT1Q9NYU2 1555 aa13.41□□□□□ -0.26
YIPF3-201ENST00000372417 CSRNP3Q8WYN3 585 aa13.4□□□□□ -0.26
YIPF3-201ENST00000372417 SPAG9O60271 1321 aaKnown RBP13.39□□□□□ -0.27
YIPF3-201ENST00000372417 FAM135AQ9P2D6 1515 aa13.39□□□□□ -0.27
YIPF3-201ENST00000372417 PHLPP1O60346 1717 aa13.38□□□□□ -0.27
YIPF3-201ENST00000372417 PZPP20742 1482 aa13.37□□□□□ -0.27
YIPF3-201ENST00000372417 THEMISQ8N1K5 641 aaPredicted RBP13.37□□□□□ -0.27
YIPF3-201ENST00000372417 FAM135BQ49AJ0 1406 aa13.37□□□□□ -0.27
YIPF3-201ENST00000372417 NLRP1Q9C000 1473 aa13.36□□□□□ -0.27
YIPF3-201ENST00000372417 KDM5DQ9BY66 1539 aa13.34□□□□□ -0.27
YIPF3-201ENST00000372417 CFAP65Q6ZU64 1925 aaKnown RBP13.33□□□□□ -0.28
YIPF3-201ENST00000372417 FBXO31Q5XUX0 539 aaPredicted RBP13.32□□□□□ -0.28
YIPF3-201ENST00000372417 ZNF777Q9ULD5 760 aaPredicted RBP13.32□□□□□ -0.28
YIPF3-201ENST00000372417 UBR1Q8IWV7 1749 aa13.31□□□□□ -0.28
YIPF3-201ENST00000372417 TRIM52Q96A61 297 aa13.3□□□□□ -0.28
YIPF3-201ENST00000372417 MIA2Q96PC5 1412 aa13.3□□□□□ -0.28
YIPF3-201ENST00000372417 LRRC9Q6ZRR7 1453 aa13.29□□□□□ -0.28
YIPF3-201ENST00000372417 PLEKHH2Q8IVE3 1493 aa13.29□□□□□ -0.28
YIPF3-201ENST00000372417 HNRNPMP52272 730 aaKnown RBP eCLIP13.29□□□□□ -0.28
YIPF3-201ENST00000372417 CCDC18Q5T9S5 1454 aa13.29□□□□□ -0.28
YIPF3-201ENST00000372417 EEA1Q15075 1411 aa13.28□□□□□ -0.28
YIPF3-201ENST00000372417 ARHGAP35Q9NRY4 1499 aa13.28□□□□□ -0.28
YIPF3-201ENST00000372417 KIAA1107Q9UPP5 1409 aa13.27□□□□□ -0.29
YIPF3-201ENST00000372417 JCADQ9P266 1359 aa13.26□□□□□ -0.29
YIPF3-201ENST00000372417 COL16A1Q07092 1604 aaPredicted RBP13.25□□□□□ -0.29
YIPF3-201ENST00000372417 GPATCH8Q9UKJ3 1502 aaKnown RBP13.25□□□□□ -0.29
YIPF3-201ENST00000372417 ZNF772Q68DY9 489 aaPredicted RBP13.25□□□□□ -0.29
YIPF3-201ENST00000372417 SHPRHQ149N8 1683 aa13.24□□□□□ -0.29
YIPF3-201ENST00000372417 SCAF11Q99590 1463 aaKnown RBP13.24□□□□□ -0.29
YIPF3-201ENST00000372417 CDK12Q9NYV4 1490 aaPredicted RBP13.24□□□□□ -0.29
YIPF3-201ENST00000372417 LRP6O75581 1613 aa13.24□□□□□ -0.29
YIPF3-201ENST00000372417 MAP3K1Q13233 1512 aa13.23□□□□□ -0.29
YIPF3-201ENST00000372417 MEX3CQ5U5Q3 659 aaKnown RBP13.22□□□□□ -0.29
YIPF3-201ENST00000372417 DHX29Q7Z478 1369 aaKnown RBP13.21□□□□□ -0.29
YIPF3-201ENST00000372417 WASHC2CQ9Y4E1 1318 aa13.21□□□□□ -0.29
YIPF3-201ENST00000372417 TIAM1Q13009 1591 aa13.2□□□□□ -0.3
YIPF3-201ENST00000372417 RXRBP28702 533 aa13.2□□□□□ -0.3
YIPF3-201ENST00000372417 TMEM94Q12767 1356 aa13.2□□□□□ -0.3
YIPF3-201ENST00000372417 KIF3BO15066 747 aa13.19□□□□□ -0.3
YIPF3-201ENST00000372417 RTEL1-TNFRSF6BF6WH68 1400 aa13.19□□□□□ -0.3
YIPF3-201ENST00000372417 CEP152O94986 1710 aa13.19□□□□□ -0.3
YIPF3-201ENST00000372417 SLIT1O75093 1534 aa13.18□□□□□ -0.3
YIPF3-201ENST00000372417 ARHGAP23Q9P227 1491 aa13.17□□□□□ -0.3
YIPF3-201ENST00000372417 SPATA31A6Q5VVP1 1343 aa13.17□□□□□ -0.3
YIPF3-201ENST00000372417 CASKIN1Q8WXD9 1431 aa13.17□□□□□ -0.3
YIPF3-201ENST00000372417 CFDP1Q9UEE9 299 aaPredicted RBP13.17□□□□□ -0.3
YIPF3-201ENST00000372417 ERVK-7P63135 1459 aa13.16□□□□□ -0.3
YIPF3-201ENST00000372417 SETBP1Q9Y6X0 1596 aa13.16□□□□□ -0.3
YIPF3-201ENST00000372417 FGD6Q6ZV73 1430 aa13.16□□□□□ -0.3
YIPF3-201ENST00000372417 KDM5AP29375 1690 aaKnown RBP13.16□□□□□ -0.3
YIPF3-201ENST00000372417 PRDM15P57071 1507 aaPredicted RBP13.15□□□□□ -0.3
YIPF3-201ENST00000372417 NCOA2Q15596 1464 aa13.15□□□□□ -0.3
YIPF3-201ENST00000372417 NWD1Q149M9 1564 aa13.15□□□□□ -0.3
YIPF3-201ENST00000372417 ABCC3O15438 1527 aa13.14□□□□□ -0.31
YIPF3-201ENST00000372417 FOXD1Q16676 465 aa13.14□□□□□ -0.31
YIPF3-201ENST00000372417 CCNB3Q8WWL7 1395 aa13.14□□□□□ -0.31
YIPF3-201ENST00000372417 NKTRP30414 1462 aaKnown RBP13.13□□□□□ -0.31
YIPF3-201ENST00000372417 MBD5Q9P267 1494 aa13.13□□□□□ -0.31
YIPF3-201ENST00000372417 MSH6P52701 1360 aa13.13□□□□□ -0.31
YIPF3-201ENST00000372417 LTKP29376 864 aa13.13□□□□□ -0.31
YIPF3-201ENST00000372417 TXNDC2Q86VQ3 553 aa13.13□□□□□ -0.31
YIPF3-201ENST00000372417 RGS12O14924 1447 aa13.13□□□□□ -0.31
YIPF3-201ENST00000372417 PROSER2Q86WR7 435 aaPredicted RBP13.12□□□□□ -0.31
YIPF3-201ENST00000372417 ZRANB1Q9UGI0 708 aa13.12□□□□□ -0.31
YIPF3-201ENST00000372417 PIK3C2BO00750 1634 aa13.12□□□□□ -0.31
YIPF3-201ENST00000372417 AHDC1Q5TGY3 1603 aaPredicted RBP13.12□□□□□ -0.31
YIPF3-201ENST00000372417 CHD2O14647 1828 aaKnown RBP13.11□□□□□ -0.31
YIPF3-201ENST00000372417 FYCO1Q9BQS8 1478 aa13.11□□□□□ -0.31
YIPF3-201ENST00000372417 UBTFP17480 764 aaKnown RBP13.11□□□□□ -0.31
YIPF3-201ENST00000372417 CHIC1Q5VXU3 224 aa13.11□□□□□ -0.31
YIPF3-201ENST00000372417 SLAIN2Q9P270 581 aa13.1□□□□□ -0.31
YIPF3-201ENST00000372417 EID1Q9Y6B2 187 aa13.1□□□□□ -0.31
YIPF3-201ENST00000372417 EP400Q96L91 3159 aa13.1□□□□□ -0.31
YIPF3-201ENST00000372417 EIF2AK4Q9P2K8 1649 aaKnown RBP13.1□□□□□ -0.31
YIPF3-201ENST00000372417 KCNA6P17658 529 aa13.09□□□□□ -0.31
YIPF3-201ENST00000372417 RBM33Q96EV2 1170 aaKnown RBP13.09□□□□□ -0.31
YIPF3-201ENST00000372417 CCDC141Q6ZP82 1450 aa13.09□□□□□ -0.31
YIPF3-201ENST00000372417 NUTM2BA6NNL0 878 aaPredicted RBP13.08□□□□□ -0.32
YIPF3-201ENST00000372417 NUTM2EB1AL46 878 aaPredicted RBP13.08□□□□□ -0.32
YIPF3-201ENST00000372417 NUTM2DQ5VT03 806 aaPredicted RBP13.08□□□□□ -0.32
YIPF3-201ENST00000372417 NUTM2AQ8IVF1 878 aaPredicted RBP13.08□□□□□ -0.32
YIPF3-201ENST00000372417 LRP5O75197 1615 aa13.08□□□□□ -0.32
YIPF3-201ENST00000372417 CAMSAP2Q08AD1 1489 aa13.08□□□□□ -0.32
YIPF3-201ENST00000372417 TET3O43151 1660 aa13.08□□□□□ -0.32
YIPF3-201ENST00000372417 DIP2AQ14689 1571 aa13.07□□□□□ -0.32
YIPF3-201ENST00000372417 EHMT2Q96KQ7 1210 aa13.07□□□□□ -0.32
YIPF3-201ENST00000372417 AFF2P51816 1311 aa13.07□□□□□ -0.32
YIPF3-201ENST00000372417 ZNF644Q9H582 1327 aaPredicted RBP13.07□□□□□ -0.32
YIPF3-201ENST00000372417 ATAD2Q6PL18 1390 aa13.07□□□□□ -0.32
YIPF3-201ENST00000372417 MROH1Q8NDA8 1641 aa13.06□□□□□ -0.32
YIPF3-201ENST00000372417 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.06□□□□□ -0.32
YIPF3-201ENST00000372417 RBM6P78332 1123 aaKnown RBP13.04□□□□□ -0.32
YIPF3-201ENST00000372417 TMEM2Q9UHN6 1383 aa13.04□□□□□ -0.32
YIPF3-201ENST00000372417 EFCAB6Q5THR3 1501 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 117.8 ms