RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 TRERF1Q96PN7 1200 aa14.72□□□□□ -0.05
PTPN1-201ENST00000371621 CCDC7Q96M83 1385 aa14.72□□□□□ -0.05
PTPN1-201ENST00000371621 NOL8Q76FK4 1167 aaKnown RBP14.72□□□□□ -0.05
PTPN1-201ENST00000371621 FGD1P98174 961 aa14.72□□□□□ -0.05
PTPN1-201ENST00000371621 MTERF4Q7Z6M4 381 aaKnown RBP14.71□□□□□ -0.05
PTPN1-201ENST00000371621 AAMPQ13685 434 aa14.71□□□□□ -0.05
PTPN1-201ENST00000371621 RALBP1Q15311 655 aa14.71□□□□□ -0.05
PTPN1-201ENST00000371621 CAVIN1Q6NZI2 390 aaKnown RBP14.71□□□□□ -0.05
PTPN1-201ENST00000371621 ZSCAN30Q86W11 494 aa14.71□□□□□ -0.05
PTPN1-201ENST00000371621 APBB1O00213 710 aa14.71□□□□□ -0.05
PTPN1-201ENST00000371621 RWDD1Q9H446 243 aaPredicted RBP14.71□□□□□ -0.05
PTPN1-201ENST00000371621 SKOR2Q2VWA4 1001 aaPredicted RBP14.7□□□□□ -0.06
PTPN1-201ENST00000371621 C22orf23Q9BZE7 217 aa14.7□□□□□ -0.06
PTPN1-201ENST00000371621 SMG6Q86US8 1419 aaKnown RBP14.7□□□□□ -0.06
PTPN1-201ENST00000371621 CSPP1Q1MSJ5 1256 aa14.7□□□□□ -0.06
PTPN1-201ENST00000371621 MCTP1Q6DN14 999 aa14.7□□□□□ -0.06
PTPN1-201ENST00000371621 PAXIP1Q6ZW49 1069 aaPredicted RBP14.7□□□□□ -0.06
PTPN1-201ENST00000371621 CUX2O14529 1486 aa14.69□□□□□ -0.06
PTPN1-201ENST00000371621 CNTLNQ9NXG0 1405 aa14.69□□□□□ -0.06
PTPN1-201ENST00000371621 SPDYE4A6NLX3 237 aa14.69□□□□□ -0.06
PTPN1-201ENST00000371621 PNISRQ8TF01 805 aaKnown RBP14.69□□□□□ -0.06
PTPN1-201ENST00000371621 NAP1L2Q9ULW6 460 aaPredicted RBP14.69□□□□□ -0.06
PTPN1-201ENST00000371621 MAPK8IP3Q9UPT6 1336 aa14.69□□□□□ -0.06
PTPN1-201ENST00000371621 PTMSP20962 102 aa14.69□□□□□ -0.06
PTPN1-201ENST00000371621 ST20-MTHFSA0A0A6YYL1 179 aa14.68□□□□□ -0.06
PTPN1-201ENST00000371621 APPP05067 770 aa14.68□□□□□ -0.06
PTPN1-201ENST00000371621 PANK1Q8TE04 598 aa14.68□□□□□ -0.06
PTPN1-201ENST00000371621 CCDC173Q0VFZ6 552 aa14.67□□□□□ -0.06
PTPN1-201ENST00000371621 ZNF592Q92610 1267 aa14.67□□□□□ -0.06
PTPN1-201ENST00000371621 MYBBP1AQ9BQG0 1328 aaKnown RBP14.67□□□□□ -0.06
PTPN1-201ENST00000371621 SENP3Q9H4L4 574 aaPredicted RBP14.66□□□□□ -0.06
PTPN1-201ENST00000371621 CADPSQ9ULU8 1353 aa14.66□□□□□ -0.06
PTPN1-201ENST00000371621 ARHGAP35Q9NRY4 1499 aa14.65□□□□□ -0.06
PTPN1-201ENST00000371621 ITPRIPQ8IWB1 547 aa14.65□□□□□ -0.06
PTPN1-201ENST00000371621 PMFBP1Q8TBY8 1022 aa14.65□□□□□ -0.06
PTPN1-201ENST00000371621 ERICH4A6NGS2 130 aa14.65□□□□□ -0.06
PTPN1-201ENST00000371621 RRP7AQ9Y3A4 280 aaKnown RBP14.63□□□□□ -0.07
PTPN1-201ENST00000371621 TBC1D2Q9BYX2 928 aa14.63□□□□□ -0.07
PTPN1-201ENST00000371621 U2SURPO15042 1029 aaKnown RBP14.63□□□□□ -0.07
PTPN1-201ENST00000371621 CENPJQ9HC77 1338 aaPredicted RBP14.61□□□□□ -0.07
PTPN1-201ENST00000371621 FAM177BA6PVY3 158 aa14.61□□□□□ -0.07
PTPN1-201ENST00000371621 NPHP1O15259 732 aa14.61□□□□□ -0.07
PTPN1-201ENST00000371621 APAF1O14727 1248 aa14.61□□□□□ -0.07
PTPN1-201ENST00000371621 FMN1Q68DA7 1419 aa14.6□□□□□ -0.07
PTPN1-201ENST00000371621 BCAR3O75815 825 aa14.6□□□□□ -0.07
PTPN1-201ENST00000371621 DNAJC5BQ9UF47 199 aa14.6□□□□□ -0.07
PTPN1-201ENST00000371621 CUX1P39880 1505 aa14.6□□□□□ -0.07
PTPN1-201ENST00000371621 CARMIL1Q5VZK9 1371 aa14.59□□□□□ -0.07
PTPN1-201ENST00000371621 KIF21BO75037 1637 aa14.59□□□□□ -0.07
PTPN1-201ENST00000371621 CHGAP10645 457 aaKnown RBP14.59□□□□□ -0.07
PTPN1-201ENST00000371621 CFTRP13569 1480 aa14.59□□□□□ -0.07
PTPN1-201ENST00000371621 KCNJ4P48050 445 aa14.59□□□□□ -0.07
PTPN1-201ENST00000371621 PKD2Q13563 968 aa14.59□□□□□ -0.07
PTPN1-201ENST00000371621 PPP4R3BQ5MIZ7 849 aa14.58□□□□□ -0.07
PTPN1-201ENST00000371621 PRPF40AO75400 957 aaKnown RBP14.58□□□□□ -0.08
PTPN1-201ENST00000371621 TOP2BQ02880 1626 aa14.58□□□□□ -0.08
PTPN1-201ENST00000371621 TSPY4P0CV99 314 aa14.58□□□□□ -0.08
PTPN1-201ENST00000371621 TSPY10P0CW01 314 aa14.58□□□□□ -0.08
PTPN1-201ENST00000371621 PHLDB1Q86UU1 1377 aa14.58□□□□□ -0.08
PTPN1-201ENST00000371621 FBLN2P98095 1184 aa14.57□□□□□ -0.08
PTPN1-201ENST00000371621 HMGXB3Q12766 1538 aa14.57□□□□□ -0.08
PTPN1-201ENST00000371621 FHAD1B1AJZ9 1412 aa14.57□□□□□ -0.08
PTPN1-201ENST00000371621 CCDC18Q5T9S5 1454 aa14.57□□□□□ -0.08
PTPN1-201ENST00000371621 KIF15Q9NS87 1388 aa14.57□□□□□ -0.08
PTPN1-201ENST00000371621 CASC1Q6TDU7 716 aa14.57□□□□□ -0.08
PTPN1-201ENST00000371621 TAOK2Q9UL54 1235 aa14.57□□□□□ -0.08
PTPN1-201ENST00000371621 ADAMTS8Q9UP79 889 aa14.56□□□□□ -0.08
PTPN1-201ENST00000371621 C8orf34Q49A92 452 aa14.56□□□□□ -0.08
PTPN1-201ENST00000371621 PDCL2Q8N4E4 241 aa14.56□□□□□ -0.08
PTPN1-201ENST00000371621 SYAP1Q96A49 352 aaPredicted RBP14.56□□□□□ -0.08
PTPN1-201ENST00000371621 CCDC39Q9UFE4 941 aa14.56□□□□□ -0.08
PTPN1-201ENST00000371621 SEC24BO95487 1268 aa14.55□□□□□ -0.08
PTPN1-201ENST00000371621 CGNL1Q0VF96 1302 aa14.55□□□□□ -0.08
PTPN1-201ENST00000371621 GOLGA6L4A6NEF3 574 aa14.55□□□□□ -0.08
PTPN1-201ENST00000371621 NBPF8Q3BBV2 869 aa14.55□□□□□ -0.08
PTPN1-201ENST00000371621 PDZRN3Q9UPQ7 1066 aa14.55□□□□□ -0.08
PTPN1-201ENST00000371621 LNPKQ9C0E8 428 aa14.55□□□□□ -0.08
PTPN1-201ENST00000371621 PANK3Q9H999 370 aa14.55□□□□□ -0.08
PTPN1-201ENST00000371621 CHMP3Q9Y3E7 222 aa14.55□□□□□ -0.08
PTPN1-201ENST00000371621 RRBP1Q9P2E9 1410 aaKnown RBP14.54□□□□□ -0.08
PTPN1-201ENST00000371621 USP47Q96K76 1375 aa14.54□□□□□ -0.08
PTPN1-201ENST00000371621 CCDC66A2RUB6 948 aa14.54□□□□□ -0.08
PTPN1-201ENST00000371621 TSC1Q92574 1164 aa14.54□□□□□ -0.08
PTPN1-201ENST00000371621 KIF3AQ9Y496 699 aa14.53□□□□□ -0.08
PTPN1-201ENST00000371621 NESP48681 1621 aa14.53□□□□□ -0.08
PTPN1-201ENST00000371621 CC2D2AQ9P2K1 1620 aa14.53□□□□□ -0.08
PTPN1-201ENST00000371621 TMF1P82094 1093 aa14.53□□□□□ -0.08
PTPN1-201ENST00000371621 HMGN5P82970 282 aaKnown RBP14.52□□□□□ -0.08
PTPN1-201ENST00000371621 AEBP2Q6ZN18 517 aaPredicted RBP14.52□□□□□ -0.08
PTPN1-201ENST00000371621 SMC4Q9NTJ3 1288 aa14.52□□□□□ -0.08
PTPN1-201ENST00000371621 IGF1RP08069 1367 aa14.52□□□□□ -0.09
PTPN1-201ENST00000371621 TDRD9Q8NDG6 1382 aaKnown RBP14.52□□□□□ -0.09
PTPN1-201ENST00000371621 FANCD2Q9BXW9 1451 aa14.52□□□□□ -0.09
PTPN1-201ENST00000371621 ANKRD45Q5TZF3 282 aa14.52□□□□□ -0.09
PTPN1-201ENST00000371621 ISY1Q9ULR0 285 aaKnown RBP14.52□□□□□ -0.09
PTPN1-201ENST00000371621 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.51□□□□□ -0.09
PTPN1-201ENST00000371621 FGD5Q6ZNL6 1462 aa14.51□□□□□ -0.09
PTPN1-201ENST00000371621 SPC24Q8NBT2 197 aa14.51□□□□□ -0.09
PTPN1-201ENST00000371621 TNPO1Q92973 898 aaKnown RBP14.51□□□□□ -0.09
PTPN1-201ENST00000371621 IFT57Q9NWB7 429 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 104 ms