RNA–Protein interactions for RNA: ENST00000368545.7

TPM3-213, Transcript of tropomyosin 3, humanhuman

TSL 1 (best)

Gene TPM3, Length 2,147 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-213ENST00000368545 VPS8Q8N3P4 1428 aa13.58□□□□□ -0.24
TPM3-213ENST00000368545 ZMYM4Q5VZL5 1548 aa13.57□□□□□ -0.24
TPM3-213ENST00000368545 FAM212AQ96EL1 285 aa13.57□□□□□ -0.24
TPM3-213ENST00000368545 FHOD3Q2V2M9 1422 aa13.56□□□□□ -0.24
TPM3-213ENST00000368545 CHRM1P11229 460 aaPredicted RBP13.55□□□□□ -0.24
TPM3-213ENST00000368545 HSPA2P54652 639 aa13.54□□□□□ -0.24
TPM3-213ENST00000368545 CADPS2Q86UW7 1296 aa13.54□□□□□ -0.24
TPM3-213ENST00000368545 ARHGAP35Q9NRY4 1499 aa13.54□□□□□ -0.24
TPM3-213ENST00000368545 UHRF1BP1Q6BDS2 1440 aa13.54□□□□□ -0.24
TPM3-213ENST00000368545 FRMPD1Q5SYB0 1578 aa13.54□□□□□ -0.24
TPM3-213ENST00000368545 LTBP4Q8N2S1 1624 aa13.53□□□□□ -0.24
TPM3-213ENST00000368545 FER1L4A9Z1Z3 1794 aa13.53□□□□□ -0.24
TPM3-213ENST00000368545 DENND4BO75064 1496 aaPredicted RBP13.53□□□□□ -0.24
TPM3-213ENST00000368545 STRCQ7RTU9 1775 aa13.51□□□□□ -0.25
TPM3-213ENST00000368545 WDR70Q9NW82 654 aa13.5□□□□□ -0.25
TPM3-213ENST00000368545 ZFYVE16Q7Z3T8 1539 aa13.5□□□□□ -0.25
TPM3-213ENST00000368545 ARHGEF12Q9NZN5 1544 aa13.5□□□□□ -0.25
TPM3-213ENST00000368545 RANGAP1P46060 587 aaPredicted RBP13.49□□□□□ -0.25
TPM3-213ENST00000368545 SETD1BQ9UPS6 1966 aaKnown RBP13.49□□□□□ -0.25
TPM3-213ENST00000368545 MED1Q15648 1581 aaPredicted RBP13.48□□□□□ -0.25
TPM3-213ENST00000368545 RASEFQ8IZ41 740 aa13.48□□□□□ -0.25
TPM3-213ENST00000368545 TTBK1Q5TCY1 1321 aaPredicted RBP13.48□□□□□ -0.25
TPM3-213ENST00000368545 SAMD9Q5K651 1589 aa13.48□□□□□ -0.25
TPM3-213ENST00000368545 MNX1P50219 401 aaPredicted RBP13.48□□□□□ -0.25
TPM3-213ENST00000368545 KCNH8Q96L42 1107 aa13.48□□□□□ -0.25
TPM3-213ENST00000368545 RICTORQ6R327 1708 aa13.47□□□□□ -0.25
TPM3-213ENST00000368545 TRIM26Q12899 539 aaPredicted RBP13.46□□□□□ -0.25
TPM3-213ENST00000368545 PYGBP11216 843 aa13.45□□□□□ -0.26
TPM3-213ENST00000368545 CREBZFQ9NS37 354 aa13.44□□□□□ -0.26
TPM3-213ENST00000368545 ZC3H15Q8WU90 426 aaKnown RBP13.43□□□□□ -0.26
TPM3-213ENST00000368545 NEUROD2Q15784 382 aa13.42□□□□□ -0.26
TPM3-213ENST00000368545 C9orf84Q5VXU9 1444 aa13.41□□□□□ -0.26
TPM3-213ENST00000368545 RAPGEF3O95398 923 aa13.41□□□□□ -0.26
TPM3-213ENST00000368545 NCOA1Q15788 1441 aa13.39□□□□□ -0.27
TPM3-213ENST00000368545 FMN1Q68DA7 1419 aa13.39□□□□□ -0.27
TPM3-213ENST00000368545 PCGF6Q9BYE7 350 aa13.39□□□□□ -0.27
TPM3-213ENST00000368545 ATP10AO60312 1499 aa13.39□□□□□ -0.27
TPM3-213ENST00000368545 MAP3K1Q13233 1512 aa13.38□□□□□ -0.27
TPM3-213ENST00000368545 REREQ9P2R6 1566 aa13.38□□□□□ -0.27
TPM3-213ENST00000368545 FYCO1Q9BQS8 1478 aa13.38□□□□□ -0.27
TPM3-213ENST00000368545 SLC24A3Q9HC58 644 aa13.37□□□□□ -0.27
TPM3-213ENST00000368545 UBAP1LF5GYI3 381 aa13.37□□□□□ -0.27
TPM3-213ENST00000368545 CNTLNQ9NXG0 1405 aa13.37□□□□□ -0.27
TPM3-213ENST00000368545 ATP10BO94823 1461 aa13.37□□□□□ -0.27
TPM3-213ENST00000368545 CASKIN1Q8WXD9 1431 aa13.35□□□□□ -0.27
TPM3-213ENST00000368545 TRAPPC8Q9Y2L5 1435 aa13.35□□□□□ -0.27
TPM3-213ENST00000368545 TIAM1Q13009 1591 aa13.34□□□□□ -0.27
TPM3-213ENST00000368545 PLA2R1Q13018 1463 aa13.34□□□□□ -0.27
TPM3-213ENST00000368545 NPATQ14207 1427 aa13.34□□□□□ -0.27
TPM3-213ENST00000368545 PPARGC1BQ86YN6 1023 aaKnown RBP13.33□□□□□ -0.28
TPM3-213ENST00000368545 CPS1P31327 1500 aa13.33□□□□□ -0.28
TPM3-213ENST00000368545 AGLP35573 1532 aa13.33□□□□□ -0.28
TPM3-213ENST00000368545 SPDYE1Q8NFV5 336 aaPredicted RBP13.33□□□□□ -0.28
TPM3-213ENST00000368545 TOM1O60784 492 aa13.32□□□□□ -0.28
TPM3-213ENST00000368545 ARHGEF1Q92888 912 aaKnown RBP13.31□□□□□ -0.28
TPM3-213ENST00000368545 PTPRKQ15262 1439 aa13.3□□□□□ -0.28
TPM3-213ENST00000368545 PRR29P0C7W0 189 aa13.3□□□□□ -0.28
TPM3-213ENST00000368545 HECW1Q76N89 1606 aa13.29□□□□□ -0.28
TPM3-213ENST00000368545 SEMA3EO15041 775 aa13.29□□□□□ -0.28
TPM3-213ENST00000368545 CLEC11AQ9Y240 323 aa13.28□□□□□ -0.28
TPM3-213ENST00000368545 MROH2AA6NES4 1674 aa13.26□□□□□ -0.29
TPM3-213ENST00000368545 RAPGEF6Q8TEU7 1601 aa13.26□□□□□ -0.29
TPM3-213ENST00000368545 LRRIQ1Q96JM4 1722 aa13.26□□□□□ -0.29
TPM3-213ENST00000368545 TESPA1A2RU30 521 aaPredicted RBP13.25□□□□□ -0.29
TPM3-213ENST00000368545 ESF1Q9H501 851 aaKnown RBP13.25□□□□□ -0.29
TPM3-213ENST00000368545 CCDC18Q5T9S5 1454 aa13.25□□□□□ -0.29
TPM3-213ENST00000368545 LRRC9Q6ZRR7 1453 aa13.25□□□□□ -0.29
TPM3-213ENST00000368545 C3P01024 1663 aa13.24□□□□□ -0.29
TPM3-213ENST00000368545 MFRPQ9BY79 579 aa13.24□□□□□ -0.29
TPM3-213ENST00000368545 ZNF142P52746 1687 aaPredicted RBP13.23□□□□□ -0.29
TPM3-213ENST00000368545 CAMSAP1Q5T5Y3 1602 aa13.23□□□□□ -0.29
TPM3-213ENST00000368545 SIGLEC1Q9BZZ2 1709 aa13.22□□□□□ -0.29
TPM3-213ENST00000368545 E2F4Q16254 413 aa13.22□□□□□ -0.29
TPM3-213ENST00000368545 PLEKHD1A6NEE1 506 aa13.22□□□□□ -0.29
TPM3-213ENST00000368545 KANK4Q5T7N3 995 aaPredicted RBP13.22□□□□□ -0.29
TPM3-213ENST00000368545 HSPA1LP34931 641 aa13.21□□□□□ -0.3
TPM3-213ENST00000368545 ZNF518AQ6AHZ1 1483 aa13.2□□□□□ -0.3
TPM3-213ENST00000368545 ZMYND10O75800 440 aa13.2□□□□□ -0.3
TPM3-213ENST00000368545 TCOF1Q13428 1488 aaKnown RBP13.19□□□□□ -0.3
TPM3-213ENST00000368545 MLECQ14165 292 aa13.19□□□□□ -0.3
TPM3-213ENST00000368545 PODXL2Q9NZ53 605 aa13.19□□□□□ -0.3
TPM3-213ENST00000368545 ATP1B4Q9UN42 357 aaPredicted RBP13.19□□□□□ -0.3
TPM3-213ENST00000368545 EHBP1L1Q8N3D4 1523 aa13.19□□□□□ -0.3
TPM3-213ENST00000368545 SCAPERQ9BY12 1400 aa13.18□□□□□ -0.3
TPM3-213ENST00000368545 PLCH2O75038 1416 aa13.18□□□□□ -0.3
TPM3-213ENST00000368545 PPP1R37O75864 691 aa13.18□□□□□ -0.3
TPM3-213ENST00000368545 ZNF467Q7Z7K2 595 aaPredicted RBP13.18□□□□□ -0.3
TPM3-213ENST00000368545 KDM5CP41229 1560 aa13.17□□□□□ -0.3
TPM3-213ENST00000368545 PDAP1Q13442 181 aaKnown RBP13.17□□□□□ -0.3
TPM3-213ENST00000368545 RRBP1Q9P2E9 1410 aaKnown RBP13.17□□□□□ -0.3
TPM3-213ENST00000368545 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.17□□□□□ -0.3
TPM3-213ENST00000368545 SUPT6HQ7KZ85 1726 aaKnown RBP13.16□□□□□ -0.3
TPM3-213ENST00000368545 MTUS2Q5JR59 1369 aa13.15□□□□□ -0.3
TPM3-213ENST00000368545 NUP153P49790 1475 aaKnown RBP13.14□□□□□ -0.31
TPM3-213ENST00000368545 MLH3Q9UHC1 1453 aa13.14□□□□□ -0.31
TPM3-213ENST00000368545 EFCAB2Q5VUJ9 269 aa13.14□□□□□ -0.31
TPM3-213ENST00000368545 CEBPAP49715 358 aaPredicted RBP13.13□□□□□ -0.31
TPM3-213ENST00000368545 PCDHB8Q9UN66 801 aa13.13□□□□□ -0.31
TPM3-213ENST00000368545 PCDHB13Q9Y5F0 798 aa13.13□□□□□ -0.31
TPM3-213ENST00000368545 ZNF335Q9H4Z2 1342 aaPredicted RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms