RNA–Protein interactions for RNA: ENST00000367142.4

NUCKS1-201, Transcript of nuclear casein kinase and cyclin dependent kinase substrate 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUCKS1, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1-201ENST00000367142 FOXD1Q16676 465 aa19.51■□□□□ 0.71
NUCKS1-201ENST00000367142 CHMP4CQ96CF2 233 aa19.51■□□□□ 0.71
NUCKS1-201ENST00000367142 C1orf141Q5JVX7 400 aa19.51■□□□□ 0.71
NUCKS1-201ENST00000367142 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.5■□□□□ 0.71
NUCKS1-201ENST00000367142 BAZ1AQ9NRL2 1556 aaPredicted RBP19.5■□□□□ 0.71
NUCKS1-201ENST00000367142 SF3A1Q15459 793 aaKnown RBP19.5■□□□□ 0.71
NUCKS1-201ENST00000367142 NUTM2DQ5VT03 806 aaPredicted RBP19.5■□□□□ 0.71
NUCKS1-201ENST00000367142 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.5■□□□□ 0.71
NUCKS1-201ENST00000367142 AMER1Q5JTC6 1135 aaPredicted RBP19.49■□□□□ 0.71
NUCKS1-201ENST00000367142 AKAP17AQ02040 695 aaKnown RBP19.49■□□□□ 0.71
NUCKS1-201ENST00000367142 MPHOSPH9Q99550 1183 aa19.49■□□□□ 0.71
NUCKS1-201ENST00000367142 MEX3CQ5U5Q3 659 aaKnown RBP19.48■□□□□ 0.71
NUCKS1-201ENST00000367142 NOL8Q76FK4 1167 aaKnown RBP19.47■□□□□ 0.71
NUCKS1-201ENST00000367142 TPD52L1Q16890 204 aaPredicted RBP19.47■□□□□ 0.71
NUCKS1-201ENST00000367142 TPM2P07951 284 aa19.47■□□□□ 0.71
NUCKS1-201ENST00000367142 SLKQ9H2G2 1235 aaPredicted RBP19.47■□□□□ 0.71
NUCKS1-201ENST00000367142 CENPJQ9HC77 1338 aaPredicted RBP19.46■□□□□ 0.71
NUCKS1-201ENST00000367142 GZF1Q9H116 711 aaPredicted RBP19.46■□□□□ 0.71
NUCKS1-201ENST00000367142 PHF14O94880 888 aa19.46■□□□□ 0.71
NUCKS1-201ENST00000367142 FMN1Q68DA7 1419 aa19.46■□□□□ 0.71
NUCKS1-201ENST00000367142 ST18O60284 1047 aa19.46■□□□□ 0.71
NUCKS1-201ENST00000367142 NUTM2FA1L443 756 aa19.45■□□□□ 0.7
NUCKS1-201ENST00000367142 LRRFIP1Q32MZ4 808 aaKnown RBP19.45■□□□□ 0.7
NUCKS1-201ENST00000367142 RSPH4AQ5TD94 716 aa19.45■□□□□ 0.7
NUCKS1-201ENST00000367142 SYNE3Q6ZMZ3 975 aa19.45■□□□□ 0.7
NUCKS1-201ENST00000367142 PES1O00541 588 aaKnown RBP19.44■□□□□ 0.7
NUCKS1-201ENST00000367142 H3BQV1 296 aa19.44■□□□□ 0.7
NUCKS1-201ENST00000367142 IFFO2Q5TF58 517 aa19.44■□□□□ 0.7
NUCKS1-201ENST00000367142 TSR1Q2NL82 804 aaKnown RBP19.44■□□□□ 0.7
NUCKS1-201ENST00000367142 TTC5Q8N0Z6 440 aa19.43■□□□□ 0.7
NUCKS1-201ENST00000367142 CCDC146Q8IYE0 955 aa19.42■□□□□ 0.7
NUCKS1-201ENST00000367142 SOGA1O94964 1423 aa19.41■□□□□ 0.7
NUCKS1-201ENST00000367142 AEBP2Q6ZN18 517 aaPredicted RBP19.41■□□□□ 0.7
NUCKS1-201ENST00000367142 CWC22Q9HCG8 908 aaKnown RBP19.41■□□□□ 0.7
NUCKS1-201ENST00000367142 RAD21O60216 631 aa19.41■□□□□ 0.7
NUCKS1-201ENST00000367142 HNRNPMP52272 730 aaKnown RBP eCLIP19.41■□□□□ 0.7
NUCKS1-201ENST00000367142 COG3Q96JB2 828 aa19.41■□□□□ 0.7
NUCKS1-201ENST00000367142 FAM184AQ8NB25 1140 aa19.4■□□□□ 0.7
NUCKS1-201ENST00000367142 GOLGA6L3A6NEY3 463 aa19.4■□□□□ 0.7
NUCKS1-201ENST00000367142 CLUAP1Q96AJ1 413 aa19.4■□□□□ 0.7
NUCKS1-201ENST00000367142 NEXNQ0ZGT2 675 aa19.39■□□□□ 0.69
NUCKS1-201ENST00000367142 CNKSR2Q8WXI2 1034 aa19.38■□□□□ 0.69
NUCKS1-201ENST00000367142 TEFQ10587 303 aa19.38■□□□□ 0.69
NUCKS1-201ENST00000367142 UACAQ9BZF9 1416 aa19.37■□□□□ 0.69
NUCKS1-201ENST00000367142 PHLDB1Q86UU1 1377 aa19.37■□□□□ 0.69
NUCKS1-201ENST00000367142 TPM1P09493 284 aa19.37■□□□□ 0.69
NUCKS1-201ENST00000367142 TNNT3P45378 269 aaPredicted RBP19.36■□□□□ 0.69
NUCKS1-201ENST00000367142 FOXD4L1Q9NU39 408 aa19.36■□□□□ 0.69
NUCKS1-201ENST00000367142 TRAK1Q9UPV9 953 aa19.36■□□□□ 0.69
NUCKS1-201ENST00000367142 DEKP35659 375 aaKnown RBP19.35■□□□□ 0.69
NUCKS1-201ENST00000367142 RILPL2Q969X0 211 aa19.35■□□□□ 0.69
NUCKS1-201ENST00000367142 ANO8Q9HCE9 1232 aaPredicted RBP19.35■□□□□ 0.69
NUCKS1-201ENST00000367142 FBXW7Q969H0 707 aa19.35■□□□□ 0.69
NUCKS1-201ENST00000367142 CCDC47Q96A33 483 aaKnown RBP19.35■□□□□ 0.69
NUCKS1-201ENST00000367142 CPLX2Q6PUV4 134 aaKnown RBP19.35■□□□□ 0.69
NUCKS1-201ENST00000367142 MYO15BQ96JP2 1530 aa19.35■□□□□ 0.69
NUCKS1-201ENST00000367142 WWC1Q8IX03 1113 aa19.34■□□□□ 0.69
NUCKS1-201ENST00000367142 PDE3BQ13370 1112 aa19.34■□□□□ 0.69
NUCKS1-201ENST00000367142 TRIM29Q14134 588 aa19.34■□□□□ 0.69
NUCKS1-201ENST00000367142 NLRP13Q86W25 1043 aa19.34■□□□□ 0.69
NUCKS1-201ENST00000367142 VPS37DQ86XT2 251 aa19.34■□□□□ 0.69
NUCKS1-201ENST00000367142 VPS8Q8N3P4 1428 aa19.33■□□□□ 0.69
NUCKS1-201ENST00000367142 ATP6V1DQ9Y5K8 247 aa19.33■□□□□ 0.69
NUCKS1-201ENST00000367142 CCDC18Q5T9S5 1454 aa19.33■□□□□ 0.68
NUCKS1-201ENST00000367142 DHX16O60231 1041 aaKnown RBP19.32■□□□□ 0.68
NUCKS1-201ENST00000367142 TDRD9Q8NDG6 1382 aaKnown RBP19.32■□□□□ 0.68
NUCKS1-201ENST00000367142 DCAF8L1A6NGE4 600 aa19.32■□□□□ 0.68
NUCKS1-201ENST00000367142 CCDC70Q6NSX1 233 aa19.32■□□□□ 0.68
NUCKS1-201ENST00000367142 DIAPH3Q9NSV4 1193 aa19.31■□□□□ 0.68
NUCKS1-201ENST00000367142 ARID3AQ99856 593 aa19.31■□□□□ 0.68
NUCKS1-201ENST00000367142 EVC2Q86UK5 1308 aa19.3■□□□□ 0.68
NUCKS1-201ENST00000367142 VGFO15240 615 aaPredicted RBP19.3■□□□□ 0.68
NUCKS1-201ENST00000367142 NGEFQ8N5V2 710 aa19.3■□□□□ 0.68
NUCKS1-201ENST00000367142 SYTL4Q96C24 671 aaPredicted RBP19.3■□□□□ 0.68
NUCKS1-201ENST00000367142 GOLGA6L19H0YKK7 550 aa19.3■□□□□ 0.68
NUCKS1-201ENST00000367142 RUFY2Q8WXA3 655 aa19.29■□□□□ 0.68
NUCKS1-201ENST00000367142 CCDC43Q96MW1 224 aaKnown RBP19.29■□□□□ 0.68
NUCKS1-201ENST00000367142 C9orf78Q9NZ63 289 aaPredicted RBP19.29■□□□□ 0.68
NUCKS1-201ENST00000367142 FOXD4L5Q5VV16 416 aaPredicted RBP19.29■□□□□ 0.68
NUCKS1-201ENST00000367142 KLHL34Q8N239 644 aa19.29■□□□□ 0.68
NUCKS1-201ENST00000367142 FOXD4L4Q8WXT5 416 aaPredicted RBP19.29■□□□□ 0.68
NUCKS1-201ENST00000367142 CGNL1Q0VF96 1302 aa19.29■□□□□ 0.68
NUCKS1-201ENST00000367142 RAB3GAP2Q9H2M9 1393 aa19.28■□□□□ 0.68
NUCKS1-201ENST00000367142 PCMTD1Q96MG8 357 aaPredicted RBP19.28■□□□□ 0.68
NUCKS1-201ENST00000367142 DDX58O95786 925 aaKnown RBP19.27■□□□□ 0.68
NUCKS1-201ENST00000367142 KIF15Q9NS87 1388 aa19.27■□□□□ 0.68
NUCKS1-201ENST00000367142 MCTP1Q6DN14 999 aa19.27■□□□□ 0.68
NUCKS1-201ENST00000367142 BECN2A8MW95 431 aa19.27■□□□□ 0.68
NUCKS1-201ENST00000367142 APPP05067 770 aa19.27■□□□□ 0.67
NUCKS1-201ENST00000367142 DDX11L8A8MPP1 907 aa19.26■□□□□ 0.67
NUCKS1-201ENST00000367142 EIF2S2P20042 333 aaKnown RBP19.26■□□□□ 0.67
NUCKS1-201ENST00000367142 ANKRD20A12PQ8NF67 263 aa19.26■□□□□ 0.67
NUCKS1-201ENST00000367142 RRP7AQ9Y3A4 280 aaKnown RBP19.26■□□□□ 0.67
NUCKS1-201ENST00000367142 RBM19Q9Y4C8 960 aaKnown RBP19.26■□□□□ 0.67
NUCKS1-201ENST00000367142 RBM33Q96EV2 1170 aaKnown RBP19.25■□□□□ 0.67
NUCKS1-201ENST00000367142 CCDC144AA2RUR9 1427 aa19.25■□□□□ 0.67
NUCKS1-201ENST00000367142 PSME1Q06323 249 aa19.25■□□□□ 0.67
NUCKS1-201ENST00000367142 ANKRD45Q5TZF3 282 aa19.25■□□□□ 0.67
NUCKS1-201ENST00000367142 KANK4Q5T7N3 995 aaPredicted RBP19.24■□□□□ 0.67
NUCKS1-201ENST00000367142 IFIT2P09913 472 aaKnown RBP19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms