RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 ABCA6Q8N139 1617 aa19.05■□□□□ 0.64
SQSTM1-201ENST00000360718 NEUROD1Q13562 356 aa19.04■□□□□ 0.64
SQSTM1-201ENST00000360718 COL17A1Q9UMD9 1497 aaPredicted RBP19.03■□□□□ 0.64
SQSTM1-201ENST00000360718 MAGI2Q86UL8 1455 aa19.01■□□□□ 0.63
SQSTM1-201ENST00000360718 DHX29Q7Z478 1369 aaKnown RBP19.01■□□□□ 0.63
SQSTM1-201ENST00000360718 FAM135AQ9P2D6 1515 aa19.01■□□□□ 0.63
SQSTM1-201ENST00000360718 YEATS2Q9ULM3 1422 aa19■□□□□ 0.63
SQSTM1-201ENST00000360718 DIP2CQ9Y2E4 1556 aa19■□□□□ 0.63
SQSTM1-201ENST00000360718 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.99■□□□□ 0.63
SQSTM1-201ENST00000360718 ZMYM4Q5VZL5 1548 aa18.99■□□□□ 0.63
SQSTM1-201ENST00000360718 A2MP01023 1474 aa18.99■□□□□ 0.63
SQSTM1-201ENST00000360718 DEPDC5O75140 1603 aa18.98■□□□□ 0.63
SQSTM1-201ENST00000360718 IQGAP3Q86VI3 1631 aa18.98■□□□□ 0.63
SQSTM1-201ENST00000360718 PKD2Q13563 968 aa18.98■□□□□ 0.63
SQSTM1-201ENST00000360718 EIF2AK4Q9P2K8 1649 aaKnown RBP18.97■□□□□ 0.63
SQSTM1-201ENST00000360718 ANKRD30BQ9BXX2 1392 aa18.97■□□□□ 0.63
SQSTM1-201ENST00000360718 MROH1Q8NDA8 1641 aa18.96■□□□□ 0.63
SQSTM1-201ENST00000360718 KIF3BO15066 747 aa18.95■□□□□ 0.62
SQSTM1-201ENST00000360718 TRHP20396 242 aaPredicted RBP18.95■□□□□ 0.62
SQSTM1-201ENST00000360718 PRDM15P57071 1507 aaPredicted RBP18.91■□□□□ 0.62
SQSTM1-201ENST00000360718 VWDEQ8N2E2 1590 aa18.91■□□□□ 0.62
SQSTM1-201ENST00000360718 RNF17Q9BXT8 1623 aaKnown RBP18.9■□□□□ 0.62
SQSTM1-201ENST00000360718 TIMELESSQ9UNS1 1208 aa18.9■□□□□ 0.62
SQSTM1-201ENST00000360718 BCORL1Q5H9F3 1711 aa18.9■□□□□ 0.62
SQSTM1-201ENST00000360718 GTF3C3Q9Y5Q9 886 aa18.88■□□□□ 0.61
SQSTM1-201ENST00000360718 SIGLEC1Q9BZZ2 1709 aa18.87■□□□□ 0.61
SQSTM1-201ENST00000360718 RPRD2Q5VT52 1461 aaKnown RBP18.87■□□□□ 0.61
SQSTM1-201ENST00000360718 E9PCH4 1651 aa18.86■□□□□ 0.61
SQSTM1-201ENST00000360718 PLA2R1Q13018 1463 aa18.85■□□□□ 0.61
SQSTM1-201ENST00000360718 TONSLQ96HA7 1378 aa18.85■□□□□ 0.61
SQSTM1-201ENST00000360718 ATP10AO60312 1499 aa18.85■□□□□ 0.61
SQSTM1-201ENST00000360718 CEP152O94986 1710 aa18.84■□□□□ 0.61
SQSTM1-201ENST00000360718 TET3O43151 1660 aa18.84■□□□□ 0.61
SQSTM1-201ENST00000360718 ARHGEF40Q8TER5 1519 aa18.83■□□□□ 0.61
SQSTM1-201ENST00000360718 GGT6Q6P531 493 aa18.83■□□□□ 0.61
SQSTM1-201ENST00000360718 KANK1Q14678 1352 aa18.82■□□□□ 0.6
SQSTM1-201ENST00000360718 REREQ9P2R6 1566 aa18.81■□□□□ 0.6
SQSTM1-201ENST00000360718 PPP1R15AO75807 674 aaPredicted RBP18.8■□□□□ 0.6
SQSTM1-201ENST00000360718 MIER1Q8N108 512 aa18.8■□□□□ 0.6
SQSTM1-201ENST00000360718 LMTK2Q8IWU2 1503 aa18.79■□□□□ 0.6
SQSTM1-201ENST00000360718 EFCAB6Q5THR3 1501 aa18.78■□□□□ 0.6
SQSTM1-201ENST00000360718 L3MBTL2Q969R5 705 aa18.78■□□□□ 0.6
SQSTM1-201ENST00000360718 ABCC3O15438 1527 aa18.78■□□□□ 0.6
SQSTM1-201ENST00000360718 AGLP35573 1532 aa18.76■□□□□ 0.59
SQSTM1-201ENST00000360718 SPHKAPQ2M3C7 1700 aa18.76■□□□□ 0.59
SQSTM1-201ENST00000360718 CCDC144AA2RUR9 1427 aa18.74■□□□□ 0.59
SQSTM1-201ENST00000360718 PTPRTO14522 1441 aa18.73■□□□□ 0.59
SQSTM1-201ENST00000360718 CAMSAP1Q5T5Y3 1602 aa18.73■□□□□ 0.59
SQSTM1-201ENST00000360718 WASHC2CQ9Y4E1 1318 aa18.73■□□□□ 0.59
SQSTM1-201ENST00000360718 CFAP65Q6ZU64 1925 aaKnown RBP18.73■□□□□ 0.59
SQSTM1-201ENST00000360718 NPATQ14207 1427 aa18.72■□□□□ 0.59
SQSTM1-201ENST00000360718 TRPM2O94759 1503 aa18.72■□□□□ 0.59
SQSTM1-201ENST00000360718 YTHDC1Q96MU7 727 aaKnown RBP18.72■□□□□ 0.59
SQSTM1-201ENST00000360718 ZC3H13Q5T200 1668 aaKnown RBP18.7■□□□□ 0.58
SQSTM1-201ENST00000360718 CLTCL1P53675 1640 aa18.7■□□□□ 0.58
SQSTM1-201ENST00000360718 UGGT1Q9NYU2 1555 aa18.69■□□□□ 0.58
SQSTM1-201ENST00000360718 MLECQ14165 292 aa18.67■□□□□ 0.58
SQSTM1-201ENST00000360718 NBPF8Q3BBV2 869 aa18.67■□□□□ 0.58
SQSTM1-201ENST00000360718 MYT1Q01538 1121 aa18.65■□□□□ 0.58
SQSTM1-201ENST00000360718 CLTCQ00610 1675 aaKnown RBP18.65■□□□□ 0.58
SQSTM1-201ENST00000360718 SPATA31E1Q6ZUB1 1445 aa18.64■□□□□ 0.57
SQSTM1-201ENST00000360718 RGL3Q3MIN7 710 aa18.63■□□□□ 0.57
SQSTM1-201ENST00000360718 ARHGAP31Q2M1Z3 1444 aa18.63■□□□□ 0.57
SQSTM1-201ENST00000360718 SYNMO15061 1565 aa18.61■□□□□ 0.57
SQSTM1-201ENST00000360718 NOS1P29475 1434 aa18.61■□□□□ 0.57
SQSTM1-201ENST00000360718 ARID4BQ4LE39 1312 aaPredicted RBP18.61■□□□□ 0.57
SQSTM1-201ENST00000360718 DCAF11Q8TEB1 546 aa18.6■□□□□ 0.57
SQSTM1-201ENST00000360718 CNTLNQ9NXG0 1405 aa18.59■□□□□ 0.57
SQSTM1-201ENST00000360718 PREX1Q8TCU6 1659 aa18.59■□□□□ 0.57
SQSTM1-201ENST00000360718 KDM2AQ9Y2K7 1162 aa18.59■□□□□ 0.57
SQSTM1-201ENST00000360718 MROH2AA6NES4 1674 aa18.59■□□□□ 0.57
SQSTM1-201ENST00000360718 PPP6R1Q9UPN7 881 aa18.58■□□□□ 0.57
SQSTM1-201ENST00000360718 KIF1BO60333 1816 aa18.58■□□□□ 0.56
SQSTM1-201ENST00000360718 ZNF326Q5BKZ1 582 aaKnown RBP18.57■□□□□ 0.56
SQSTM1-201ENST00000360718 FBXO31Q5XUX0 539 aaPredicted RBP18.57■□□□□ 0.56
SQSTM1-201ENST00000360718 PIK3C2BO00750 1634 aa18.57■□□□□ 0.56
SQSTM1-201ENST00000360718 UHRF1BP1Q6BDS2 1440 aa18.57■□□□□ 0.56
SQSTM1-201ENST00000360718 HIRIP3Q9BW71 556 aaPredicted RBP18.54■□□□□ 0.56
SQSTM1-201ENST00000360718 ERVK-7P63135 1459 aa18.54■□□□□ 0.56
SQSTM1-201ENST00000360718 NEURL4Q96JN8 1562 aa18.53■□□□□ 0.56
SQSTM1-201ENST00000360718 ADGRB3O60242 1522 aa18.53■□□□□ 0.56
SQSTM1-201ENST00000360718 PRAG1Q86YV5 1406 aa18.52■□□□□ 0.56
SQSTM1-201ENST00000360718 ZMYM3Q14202 1370 aa18.51■□□□□ 0.55
SQSTM1-201ENST00000360718 IDI1Q13907 227 aa18.5■□□□□ 0.55
SQSTM1-201ENST00000360718 SPATA31D1Q6ZQQ2 1576 aa18.5■□□□□ 0.55
SQSTM1-201ENST00000360718 IFT172Q9UG01 1749 aa18.5■□□□□ 0.55
SQSTM1-201ENST00000360718 RALGAPBQ86X10 1494 aa18.49■□□□□ 0.55
SQSTM1-201ENST00000360718 TRPM1Q7Z4N2 1603 aa18.49■□□□□ 0.55
SQSTM1-201ENST00000360718 CHGAP10645 457 aaKnown RBP18.48■□□□□ 0.55
SQSTM1-201ENST00000360718 MYO5BQ9ULV0 1848 aa18.48■□□□□ 0.55
SQSTM1-201ENST00000360718 ESF1Q9H501 851 aaKnown RBP18.48■□□□□ 0.55
SQSTM1-201ENST00000360718 MADDQ8WXG6 1647 aa18.48■□□□□ 0.55
SQSTM1-201ENST00000360718 FER1L4A9Z1Z3 1794 aa18.47■□□□□ 0.55
SQSTM1-201ENST00000360718 HSPA5P11021 654 aaKnown RBP18.46■□□□□ 0.54
SQSTM1-201ENST00000360718 SLC52A1Q9NWF4 448 aa18.45■□□□□ 0.54
SQSTM1-201ENST00000360718 TMEM131LA2VDJ0 1609 aa18.45■□□□□ 0.54
SQSTM1-201ENST00000360718 PPLO60437 1756 aa18.45■□□□□ 0.54
SQSTM1-201ENST00000360718 NBPF1Q3BBV0 1214 aa18.44■□□□□ 0.54
SQSTM1-201ENST00000360718 STAC3Q96MF2 364 aa18.43■□□□□ 0.54
SQSTM1-201ENST00000360718 C3P01024 1663 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms