RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 DUOX2Q9NRD8 1548 aa6.04□□□□□ -1.44
LIG4-201ENST00000356922 MROH1Q8NDA8 1641 aa6.04□□□□□ -1.44
LIG4-201ENST00000356922 TRIM52Q96A61 297 aa6.03□□□□□ -1.44
LIG4-201ENST00000356922 PLPPR3Q6T4P5 718 aa6.03□□□□□ -1.44
LIG4-201ENST00000356922 NUP155O75694 1391 aa6.03□□□□□ -1.44
LIG4-201ENST00000356922 FBXO31Q5XUX0 539 aaPredicted RBP6.02□□□□□ -1.45
LIG4-201ENST00000356922 ERBINQ96RT1 1412 aa6.02□□□□□ -1.45
LIG4-201ENST00000356922 GCC2Q8IWJ2 1684 aa6.02□□□□□ -1.45
LIG4-201ENST00000356922 PZPP20742 1482 aa6.02□□□□□ -1.45
LIG4-201ENST00000356922 MPHOSPH9Q99550 1183 aa6.01□□□□□ -1.45
LIG4-201ENST00000356922 WASHC2CQ9Y4E1 1318 aa6.01□□□□□ -1.45
LIG4-201ENST00000356922 REREQ9P2R6 1566 aa6.01□□□□□ -1.45
LIG4-201ENST00000356922 AGLP35573 1532 aa6.01□□□□□ -1.45
LIG4-201ENST00000356922 CFAP65Q6ZU64 1925 aaKnown RBP6□□□□□ -1.45
LIG4-201ENST00000356922 PKD2Q13563 968 aa6□□□□□ -1.45
LIG4-201ENST00000356922 SLC4A1APQ9BWU0 796 aaKnown RBP6□□□□□ -1.45
LIG4-201ENST00000356922 DEPDC5O75140 1603 aa5.99□□□□□ -1.45
LIG4-201ENST00000356922 DHX57Q6P158 1386 aaKnown RBP5.99□□□□□ -1.45
LIG4-201ENST00000356922 VWDEQ8N2E2 1590 aa5.99□□□□□ -1.45
LIG4-201ENST00000356922 ZMYM3Q14202 1370 aa5.99□□□□□ -1.45
LIG4-201ENST00000356922 PLA2R1Q13018 1463 aa5.99□□□□□ -1.45
LIG4-201ENST00000356922 BCORL1Q5H9F3 1711 aa5.99□□□□□ -1.45
LIG4-201ENST00000356922 HRCP23327 699 aa5.99□□□□□ -1.45
LIG4-201ENST00000356922 SIN3AQ96ST3 1273 aa5.99□□□□□ -1.45
LIG4-201ENST00000356922 FAM135AQ9P2D6 1515 aa5.99□□□□□ -1.45
LIG4-201ENST00000356922 RNF17Q9BXT8 1623 aaKnown RBP5.99□□□□□ -1.45
LIG4-201ENST00000356922 UNC13BO14795 1591 aa5.98□□□□□ -1.45
LIG4-201ENST00000356922 ABCC3O15438 1527 aa5.98□□□□□ -1.45
LIG4-201ENST00000356922 PRDM15P57071 1507 aaPredicted RBP5.98□□□□□ -1.45
LIG4-201ENST00000356922 CEP152O94986 1710 aa5.98□□□□□ -1.45
LIG4-201ENST00000356922 MADDQ8WXG6 1647 aa5.98□□□□□ -1.45
LIG4-201ENST00000356922 EIF2AK4Q9P2K8 1649 aaKnown RBP5.98□□□□□ -1.45
LIG4-201ENST00000356922 NPATQ14207 1427 aa5.98□□□□□ -1.45
LIG4-201ENST00000356922 ADAMTSL3P82987 1691 aa5.98□□□□□ -1.45
LIG4-201ENST00000356922 CLTCQ00610 1675 aaKnown RBP5.98□□□□□ -1.45
LIG4-201ENST00000356922 UGGT1Q9NYU2 1555 aa5.96□□□□□ -1.45
LIG4-201ENST00000356922 E9PCH4 1651 aa5.96□□□□□ -1.46
LIG4-201ENST00000356922 IQGAP3Q86VI3 1631 aa5.96□□□□□ -1.46
LIG4-201ENST00000356922 KDM5DQ9BY66 1539 aa5.96□□□□□ -1.46
LIG4-201ENST00000356922 IDI1Q13907 227 aa5.95□□□□□ -1.46
LIG4-201ENST00000356922 ANKRD30BQ9BXX2 1392 aa5.95□□□□□ -1.46
LIG4-201ENST00000356922 PTPRMP28827 1452 aa5.95□□□□□ -1.46
LIG4-201ENST00000356922 RIMS1Q86UR5 1692 aaKnown RBP5.95□□□□□ -1.46
LIG4-201ENST00000356922 LMTK2Q8IWU2 1503 aa5.95□□□□□ -1.46
LIG4-201ENST00000356922 PPP6R1Q9UPN7 881 aa5.94□□□□□ -1.46
LIG4-201ENST00000356922 FER1L4A9Z1Z3 1794 aa5.94□□□□□ -1.46
LIG4-201ENST00000356922 EFCAB6Q5THR3 1501 aa5.94□□□□□ -1.46
LIG4-201ENST00000356922 C3P01024 1663 aa5.94□□□□□ -1.46
LIG4-201ENST00000356922 KANK1Q14678 1352 aa5.94□□□□□ -1.46
LIG4-201ENST00000356922 ESF1Q9H501 851 aaKnown RBP5.94□□□□□ -1.46
LIG4-201ENST00000356922 CAMSAP1Q5T5Y3 1602 aa5.94□□□□□ -1.46
LIG4-201ENST00000356922 NEUROD1Q13562 356 aa5.94□□□□□ -1.46
LIG4-201ENST00000356922 CCER1Q8TC90 406 aaPredicted RBP5.94□□□□□ -1.46
LIG4-201ENST00000356922 NOS1P29475 1434 aa5.93□□□□□ -1.46
LIG4-201ENST00000356922 SYNMO15061 1565 aa5.93□□□□□ -1.46
LIG4-201ENST00000356922 TET3O43151 1660 aa5.93□□□□□ -1.46
LIG4-201ENST00000356922 PTPRTO14522 1441 aa5.93□□□□□ -1.46
LIG4-201ENST00000356922 ARHGAP31Q2M1Z3 1444 aa5.93□□□□□ -1.46
LIG4-201ENST00000356922 NUTM2DQ5VT03 806 aaPredicted RBP5.93□□□□□ -1.46
LIG4-201ENST00000356922 ERVK-7P63135 1459 aa5.92□□□□□ -1.46
LIG4-201ENST00000356922 RGL3Q3MIN7 710 aa5.92□□□□□ -1.46
LIG4-201ENST00000356922 HSPA2P54652 639 aa5.92□□□□□ -1.46
LIG4-201ENST00000356922 PREX1Q8TCU6 1659 aa5.91□□□□□ -1.46
LIG4-201ENST00000356922 CNTLNQ9NXG0 1405 aa5.91□□□□□ -1.46
LIG4-201ENST00000356922 CLTCL1P53675 1640 aa5.9□□□□□ -1.46
LIG4-201ENST00000356922 ZC3H13Q5T200 1668 aaKnown RBP5.9□□□□□ -1.46
LIG4-201ENST00000356922 SPATA31D1Q6ZQQ2 1576 aa5.9□□□□□ -1.46
LIG4-201ENST00000356922 TNRQ92752 1358 aa5.9□□□□□ -1.46
LIG4-201ENST00000356922 CHGAP10645 457 aaKnown RBP5.9□□□□□ -1.46
LIG4-201ENST00000356922 RPRD2Q5VT52 1461 aaKnown RBP5.9□□□□□ -1.47
LIG4-201ENST00000356922 MROH2AA6NES4 1674 aa5.9□□□□□ -1.47
LIG4-201ENST00000356922 LTKP29376 864 aa5.89□□□□□ -1.47
LIG4-201ENST00000356922 L3MBTL2Q969R5 705 aa5.89□□□□□ -1.47
LIG4-201ENST00000356922 SPHKAPQ2M3C7 1700 aa5.89□□□□□ -1.47
LIG4-201ENST00000356922 TRPM2O94759 1503 aa5.89□□□□□ -1.47
LIG4-201ENST00000356922 SPATA31E1Q6ZUB1 1445 aa5.89□□□□□ -1.47
LIG4-201ENST00000356922 PIK3C2BO00750 1634 aa5.88□□□□□ -1.47
LIG4-201ENST00000356922 MYO5BQ9ULV0 1848 aa5.88□□□□□ -1.47
LIG4-201ENST00000356922 SLC52A1Q9NWF4 448 aa5.88□□□□□ -1.47
LIG4-201ENST00000356922 KDM2AQ9Y2K7 1162 aa5.88□□□□□ -1.47
LIG4-201ENST00000356922 CCDC144AA2RUR9 1427 aa5.88□□□□□ -1.47
LIG4-201ENST00000356922 A2ML1A8K2U0 1454 aa5.88□□□□□ -1.47
LIG4-201ENST00000356922 ADGRF5Q8IZF2 1346 aa5.87□□□□□ -1.47
LIG4-201ENST00000356922 NBPF8Q3BBV2 869 aa5.87□□□□□ -1.47
LIG4-201ENST00000356922 TMEM131LA2VDJ0 1609 aa5.87□□□□□ -1.47
LIG4-201ENST00000356922 SETD1BQ9UPS6 1966 aaKnown RBP5.87□□□□□ -1.47
LIG4-201ENST00000356922 DCAF11Q8TEB1 546 aa5.87□□□□□ -1.47
LIG4-201ENST00000356922 LMTK3Q96Q04 1460 aa5.87□□□□□ -1.47
LIG4-201ENST00000356922 MYO3AQ8NEV4 1616 aa5.86□□□□□ -1.47
LIG4-201ENST00000356922 NCKAP5LQ9HCH0 1330 aa5.86□□□□□ -1.47
LIG4-201ENST00000356922 ZNF326Q5BKZ1 582 aaKnown RBP5.86□□□□□ -1.47
LIG4-201ENST00000356922 UBR1Q8IWV7 1749 aa5.86□□□□□ -1.47
LIG4-201ENST00000356922 STAG3Q9UJ98 1225 aa5.85□□□□□ -1.47
LIG4-201ENST00000356922 ACIN1Q9UKV3 1341 aaKnown RBP5.85□□□□□ -1.47
LIG4-201ENST00000356922 CEP170BQ9Y4F5 1589 aaPredicted RBP5.85□□□□□ -1.47
LIG4-201ENST00000356922 NBPF1Q3BBV0 1214 aa5.85□□□□□ -1.47
LIG4-201ENST00000356922 ADGRB3O60242 1522 aa5.85□□□□□ -1.47
LIG4-201ENST00000356922 TMEM2Q9UHN6 1383 aa5.85□□□□□ -1.47
LIG4-201ENST00000356922 ZFYVE9O95405 1425 aa5.85□□□□□ -1.47
LIG4-201ENST00000356922 TXNDC2Q86VQ3 553 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms