RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 CNTLNQ9NXG0 1405 aa19■□□□□ 0.63
TRIM4-201ENST00000349062 ADCY10Q96PN6 1610 aa18.99■□□□□ 0.63
TRIM4-201ENST00000349062 SCAPERQ9BY12 1400 aa18.98■□□□□ 0.63
TRIM4-201ENST00000349062 CC2D1BQ5T0F9 858 aaKnown RBP18.98■□□□□ 0.63
TRIM4-201ENST00000349062 CDC42BPBQ9Y5S2 1711 aa18.98■□□□□ 0.63
TRIM4-201ENST00000349062 ARHGEF12Q9NZN5 1544 aa18.98■□□□□ 0.63
TRIM4-201ENST00000349062 TMC1Q8TDI8 760 aa18.98■□□□□ 0.63
TRIM4-201ENST00000349062 NUTM2DQ5VT03 806 aaPredicted RBP18.97■□□□□ 0.63
TRIM4-201ENST00000349062 ADGBQ8N7X0 1667 aa18.97■□□□□ 0.63
TRIM4-201ENST00000349062 FAM135AQ9P2D6 1515 aa18.93■□□□□ 0.62
TRIM4-201ENST00000349062 PLCH2O75038 1416 aa18.93■□□□□ 0.62
TRIM4-201ENST00000349062 RAPGEF3O95398 923 aa18.92■□□□□ 0.62
TRIM4-201ENST00000349062 CROCC2H7BZ55 1655 aa18.91■□□□□ 0.62
TRIM4-201ENST00000349062 SHANK2Q9UPX8 1470 aa18.9■□□□□ 0.62
TRIM4-201ENST00000349062 ZCCHC11Q5TAX3 1644 aaKnown RBP18.9■□□□□ 0.62
TRIM4-201ENST00000349062 PREX2Q70Z35 1606 aa18.9■□□□□ 0.62
TRIM4-201ENST00000349062 RBM19Q9Y4C8 960 aaKnown RBP18.87■□□□□ 0.61
TRIM4-201ENST00000349062 SPATA31E1Q6ZUB1 1445 aa18.86■□□□□ 0.61
TRIM4-201ENST00000349062 ASXL2Q76L83 1435 aa18.86■□□□□ 0.61
TRIM4-201ENST00000349062 FANCAO15360 1455 aa18.86■□□□□ 0.61
TRIM4-201ENST00000349062 SHROOM2Q13796 1616 aa18.85■□□□□ 0.61
TRIM4-201ENST00000349062 MYO5CQ9NQX4 1742 aa18.84■□□□□ 0.61
TRIM4-201ENST00000349062 ERICH6Q7L0X2 663 aa18.83■□□□□ 0.61
TRIM4-201ENST00000349062 CLASP1Q7Z460 1538 aa18.82■□□□□ 0.6
TRIM4-201ENST00000349062 PANK3Q9H999 370 aa18.82■□□□□ 0.6
TRIM4-201ENST00000349062 ARHGEF5Q12774 1597 aa18.82■□□□□ 0.6
TRIM4-201ENST00000349062 ADGRL1O94910 1474 aa18.81■□□□□ 0.6
TRIM4-201ENST00000349062 PLA2R1Q13018 1463 aa18.81■□□□□ 0.6
TRIM4-201ENST00000349062 WDR7Q9Y4E6 1490 aa18.81■□□□□ 0.6
TRIM4-201ENST00000349062 CFAP70Q5T0N1 1121 aa18.8■□□□□ 0.6
TRIM4-201ENST00000349062 SAFB2Q14151 953 aaKnown RBP eCLIP18.79■□□□□ 0.6
TRIM4-201ENST00000349062 KANK1Q14678 1352 aa18.79■□□□□ 0.6
TRIM4-201ENST00000349062 MLECQ14165 292 aa18.79■□□□□ 0.6
TRIM4-201ENST00000349062 PLPPR3Q6T4P5 718 aa18.79■□□□□ 0.6
TRIM4-201ENST00000349062 CFAP65Q6ZU64 1925 aaKnown RBP18.78■□□□□ 0.6
TRIM4-201ENST00000349062 BCORL1Q5H9F3 1711 aa18.78■□□□□ 0.6
TRIM4-201ENST00000349062 TMF1P82094 1093 aa18.77■□□□□ 0.6
TRIM4-201ENST00000349062 WASHC2CQ9Y4E1 1318 aa18.76■□□□□ 0.59
TRIM4-201ENST00000349062 A2MP01023 1474 aa18.75■□□□□ 0.59
TRIM4-201ENST00000349062 DISP3Q9P2K9 1392 aa18.75■□□□□ 0.59
TRIM4-201ENST00000349062 B4GALNT3Q6L9W6 998 aa18.75■□□□□ 0.59
TRIM4-201ENST00000349062 TNNT2P45379 298 aaPredicted RBP18.74■□□□□ 0.59
TRIM4-201ENST00000349062 TMEM132EQ6IEE7 984 aa18.74■□□□□ 0.59
TRIM4-201ENST00000349062 DHX29Q7Z478 1369 aaKnown RBP18.74■□□□□ 0.59
TRIM4-201ENST00000349062 PRAG1Q86YV5 1406 aa18.74■□□□□ 0.59
TRIM4-201ENST00000349062 DUOX2Q9NRD8 1548 aa18.74■□□□□ 0.59
TRIM4-201ENST00000349062 RALGAPBQ86X10 1494 aa18.74■□□□□ 0.59
TRIM4-201ENST00000349062 TRAK1Q9UPV9 953 aa18.73■□□□□ 0.59
TRIM4-201ENST00000349062 CD109Q6YHK3 1445 aa18.73■□□□□ 0.59
TRIM4-201ENST00000349062 ABCC1P33527 1531 aa18.71■□□□□ 0.59
TRIM4-201ENST00000349062 ADGRF5Q8IZF2 1346 aa18.71■□□□□ 0.59
TRIM4-201ENST00000349062 FAM69CQ0P6D2 419 aa18.7■□□□□ 0.58
TRIM4-201ENST00000349062 UHRF1BP1LA0JNW5 1464 aa18.7■□□□□ 0.58
TRIM4-201ENST00000349062 STK26Q9P289 416 aa18.69■□□□□ 0.58
TRIM4-201ENST00000349062 KNSTRNQ9Y448 316 aa18.69■□□□□ 0.58
TRIM4-201ENST00000349062 TESK2Q96S53 571 aa18.68■□□□□ 0.58
TRIM4-201ENST00000349062 KDM5CP41229 1560 aa18.68■□□□□ 0.58
TRIM4-201ENST00000349062 UHRF1BP1Q6BDS2 1440 aa18.68■□□□□ 0.58
TRIM4-201ENST00000349062 PNISRQ8TF01 805 aaKnown RBP18.68■□□□□ 0.58
TRIM4-201ENST00000349062 ERBINQ96RT1 1412 aa18.68■□□□□ 0.58
TRIM4-201ENST00000349062 UGGT1Q9NYU2 1555 aa18.67■□□□□ 0.58
TRIM4-201ENST00000349062 KTN1Q86UP2 1357 aaKnown RBP18.67■□□□□ 0.58
TRIM4-201ENST00000349062 ZBED9Q6R2W3 1325 aa18.65■□□□□ 0.58
TRIM4-201ENST00000349062 MYBBP1AQ9BQG0 1328 aaKnown RBP18.65■□□□□ 0.58
TRIM4-201ENST00000349062 KDM5DQ9BY66 1539 aa18.65■□□□□ 0.58
TRIM4-201ENST00000349062 STAG3Q9UJ98 1225 aa18.64■□□□□ 0.57
TRIM4-201ENST00000349062 ATP7AQ04656 1500 aa18.63■□□□□ 0.57
TRIM4-201ENST00000349062 RALBP1Q15311 655 aa18.62■□□□□ 0.57
TRIM4-201ENST00000349062 NLRP13Q86W25 1043 aa18.61■□□□□ 0.57
TRIM4-201ENST00000349062 CDCA7LQ96GN5 454 aa18.61■□□□□ 0.57
TRIM4-201ENST00000349062 MAST1Q9Y2H9 1570 aa18.6■□□□□ 0.57
TRIM4-201ENST00000349062 ZFYVE16Q7Z3T8 1539 aa18.6■□□□□ 0.57
TRIM4-201ENST00000349062 MSH5O43196 834 aa18.59■□□□□ 0.57
TRIM4-201ENST00000349062 CCDC146Q8IYE0 955 aa18.59■□□□□ 0.57
TRIM4-201ENST00000349062 ATP10AO60312 1499 aa18.59■□□□□ 0.57
TRIM4-201ENST00000349062 ARID4BQ4LE39 1312 aaPredicted RBP18.59■□□□□ 0.57
TRIM4-201ENST00000349062 PER1O15534 1290 aaPredicted RBP18.57■□□□□ 0.56
TRIM4-201ENST00000349062 PLXNC1O60486 1568 aa18.57■□□□□ 0.56
TRIM4-201ENST00000349062 FBXO31Q5XUX0 539 aaPredicted RBP18.56■□□□□ 0.56
TRIM4-201ENST00000349062 UNC13BO14795 1591 aa18.56■□□□□ 0.56
TRIM4-201ENST00000349062 WDR43Q15061 677 aaKnown RBP eCLIP18.56■□□□□ 0.56
TRIM4-201ENST00000349062 IQGAP3Q86VI3 1631 aa18.55■□□□□ 0.56
TRIM4-201ENST00000349062 NUDCQ9Y266 331 aa18.55■□□□□ 0.56
TRIM4-201ENST00000349062 NEUROD2Q15784 382 aa18.55■□□□□ 0.56
TRIM4-201ENST00000349062 RTEL1-TNFRSF6BF6WH68 1400 aa18.54■□□□□ 0.56
TRIM4-201ENST00000349062 PLIN1O60240 522 aa18.53■□□□□ 0.56
TRIM4-201ENST00000349062 ADAMTS8Q9UP79 889 aa18.53■□□□□ 0.56
TRIM4-201ENST00000349062 NOS1P29475 1434 aa18.52■□□□□ 0.56
TRIM4-201ENST00000349062 E9PCH4 1651 aa18.52■□□□□ 0.56
TRIM4-201ENST00000349062 SLC12A5Q9H2X9 1139 aa18.52■□□□□ 0.56
TRIM4-201ENST00000349062 CCDC136Q96JN2 1154 aa18.51■□□□□ 0.55
TRIM4-201ENST00000349062 ZNF518AQ6AHZ1 1483 aa18.51■□□□□ 0.55
TRIM4-201ENST00000349062 PPP4R2Q9NY27 417 aa18.5■□□□□ 0.55
TRIM4-201ENST00000349062 IDI1Q13907 227 aa18.5■□□□□ 0.55
TRIM4-201ENST00000349062 CDCA8Q53HL2 280 aa18.5■□□□□ 0.55
TRIM4-201ENST00000349062 TRPM1Q7Z4N2 1603 aa18.49■□□□□ 0.55
TRIM4-201ENST00000349062 NBR1Q14596 966 aa18.48■□□□□ 0.55
TRIM4-201ENST00000349062 BRD4O60885 1362 aaPredicted RBP18.48■□□□□ 0.55
TRIM4-201ENST00000349062 PPP2R1AP30153 589 aa18.47■□□□□ 0.55
TRIM4-201ENST00000349062 CLTCL1P53675 1640 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms