RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 REREQ9P2R6 1566 aa25.27■■□□□ 1.64
CLDN4-201ENST00000340958 AEBP2Q6ZN18 517 aaPredicted RBP25.26■■□□□ 1.63
CLDN4-201ENST00000340958 SLC4A1APQ9BWU0 796 aaKnown RBP25.26■■□□□ 1.63
CLDN4-201ENST00000340958 NEUROD1Q13562 356 aa25.24■■□□□ 1.63
CLDN4-201ENST00000340958 DUOX2Q9NRD8 1548 aa25.24■■□□□ 1.63
CLDN4-201ENST00000340958 NUP155O75694 1391 aa25.22■■□□□ 1.63
CLDN4-201ENST00000340958 MADDQ8WXG6 1647 aa25.22■■□□□ 1.63
CLDN4-201ENST00000340958 SIN3AQ96ST3 1273 aa25.19■■□□□ 1.62
CLDN4-201ENST00000340958 ERBINQ96RT1 1412 aa25.18■■□□□ 1.62
CLDN4-201ENST00000340958 MLECQ14165 292 aa25.18■■□□□ 1.62
CLDN4-201ENST00000340958 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.18■■□□□ 1.62
CLDN4-201ENST00000340958 AGLP35573 1532 aa25.17■■□□□ 1.62
CLDN4-201ENST00000340958 A2MP01023 1474 aa25.16■■□□□ 1.62
CLDN4-201ENST00000340958 FER1L4A9Z1Z3 1794 aa25.15■■□□□ 1.62
CLDN4-201ENST00000340958 FOXD1Q16676 465 aa25.15■■□□□ 1.62
CLDN4-201ENST00000340958 RIMS1Q86UR5 1692 aaKnown RBP25.15■■□□□ 1.62
CLDN4-201ENST00000340958 PZPP20742 1482 aa25.13■■□□□ 1.61
CLDN4-201ENST00000340958 PKD2Q13563 968 aa25.11■■□□□ 1.61
CLDN4-201ENST00000340958 PTPRMP28827 1452 aa25.1■■□□□ 1.61
CLDN4-201ENST00000340958 DHX29Q7Z478 1369 aaKnown RBP25.09■■□□□ 1.61
CLDN4-201ENST00000340958 KDM5DQ9BY66 1539 aa25.07■■□□□ 1.6
CLDN4-201ENST00000340958 KIF3BO15066 747 aa25.07■■□□□ 1.6
CLDN4-201ENST00000340958 TONSLQ96HA7 1378 aa25.05■■□□□ 1.6
CLDN4-201ENST00000340958 UNC13BO14795 1591 aa25.05■■□□□ 1.6
CLDN4-201ENST00000340958 TIMELESSQ9UNS1 1208 aa25.05■■□□□ 1.6
CLDN4-201ENST00000340958 FAM135AQ9P2D6 1515 aa25.04■■□□□ 1.6
CLDN4-201ENST00000340958 ANKRD30BQ9BXX2 1392 aa25.01■■□□□ 1.59
CLDN4-201ENST00000340958 KANK1Q14678 1352 aa25.01■■□□□ 1.59
CLDN4-201ENST00000340958 EIF2AK4Q9P2K8 1649 aaKnown RBP24.97■■□□□ 1.59
CLDN4-201ENST00000340958 GGT6Q6P531 493 aa24.96■■□□□ 1.59
CLDN4-201ENST00000340958 PLPPR3Q6T4P5 718 aa24.96■■□□□ 1.59
CLDN4-201ENST00000340958 IQGAP3Q86VI3 1631 aa24.96■■□□□ 1.59
CLDN4-201ENST00000340958 CLTCQ00610 1675 aaKnown RBP24.95■■□□□ 1.58
CLDN4-201ENST00000340958 C3P01024 1663 aa24.94■■□□□ 1.58
CLDN4-201ENST00000340958 ESF1Q9H501 851 aaKnown RBP24.93■■□□□ 1.58
CLDN4-201ENST00000340958 MROH2AA6NES4 1674 aa24.91■■□□□ 1.58
CLDN4-201ENST00000340958 RNF17Q9BXT8 1623 aaKnown RBP24.91■■□□□ 1.58
CLDN4-201ENST00000340958 CNTLNQ9NXG0 1405 aa24.91■■□□□ 1.58
CLDN4-201ENST00000340958 DEPDC5O75140 1603 aa24.9■■□□□ 1.58
CLDN4-201ENST00000340958 CEBPAP49715 358 aaPredicted RBP24.9■■□□□ 1.58
CLDN4-201ENST00000340958 RPRD2Q5VT52 1461 aaKnown RBP24.89■■□□□ 1.57
CLDN4-201ENST00000340958 PPP1R15AO75807 674 aaPredicted RBP24.87■■□□□ 1.57
CLDN4-201ENST00000340958 MROH1Q8NDA8 1641 aa24.86■■□□□ 1.57
CLDN4-201ENST00000340958 PRDM15P57071 1507 aaPredicted RBP24.86■■□□□ 1.57
CLDN4-201ENST00000340958 PPP6R1Q9UPN7 881 aa24.85■■□□□ 1.57
CLDN4-201ENST00000340958 ZMYM3Q14202 1370 aa24.83■■□□□ 1.57
CLDN4-201ENST00000340958 WASHC2CQ9Y4E1 1318 aa24.83■■□□□ 1.56
CLDN4-201ENST00000340958 CCDC144AA2RUR9 1427 aa24.82■■□□□ 1.56
CLDN4-201ENST00000340958 L3MBTL2Q969R5 705 aa24.82■■□□□ 1.56
CLDN4-201ENST00000340958 VWDEQ8N2E2 1590 aa24.8■■□□□ 1.56
CLDN4-201ENST00000340958 TET3O43151 1660 aa24.79■■□□□ 1.56
CLDN4-201ENST00000340958 ZC3H13Q5T200 1668 aaKnown RBP24.79■■□□□ 1.56
CLDN4-201ENST00000340958 CEP152O94986 1710 aa24.79■■□□□ 1.56
CLDN4-201ENST00000340958 PREX1Q8TCU6 1659 aa24.79■■□□□ 1.56
CLDN4-201ENST00000340958 LMTK3Q96Q04 1460 aa24.78■■□□□ 1.56
CLDN4-201ENST00000340958 SETD1BQ9UPS6 1966 aaKnown RBP24.78■■□□□ 1.56
CLDN4-201ENST00000340958 ABCC3O15438 1527 aa24.78■■□□□ 1.56
CLDN4-201ENST00000340958 ZNF316A6NFI3 1004 aaPredicted RBP24.77■■□□□ 1.56
CLDN4-201ENST00000340958 E9PCH4 1651 aa24.76■■□□□ 1.55
CLDN4-201ENST00000340958 PLA2R1Q13018 1463 aa24.73■■□□□ 1.55
CLDN4-201ENST00000340958 LMTK2Q8IWU2 1503 aa24.73■■□□□ 1.55
CLDN4-201ENST00000340958 NPATQ14207 1427 aa24.72■■□□□ 1.55
CLDN4-201ENST00000340958 CAMSAP1Q5T5Y3 1602 aa24.72■■□□□ 1.55
CLDN4-201ENST00000340958 EFCAB6Q5THR3 1501 aa24.71■■□□□ 1.55
CLDN4-201ENST00000340958 UHRF1BP1Q6BDS2 1440 aa24.68■■□□□ 1.54
CLDN4-201ENST00000340958 RGL3Q3MIN7 710 aa24.68■■□□□ 1.54
CLDN4-201ENST00000340958 ZNF326Q5BKZ1 582 aaKnown RBP24.68■■□□□ 1.54
CLDN4-201ENST00000340958 MYO3AQ8NEV4 1616 aa24.67■■□□□ 1.54
CLDN4-201ENST00000340958 CFAP65Q6ZU64 1925 aaKnown RBP24.66■■□□□ 1.54
CLDN4-201ENST00000340958 PTPRTO14522 1441 aa24.66■■□□□ 1.54
CLDN4-201ENST00000340958 SPHKAPQ2M3C7 1700 aa24.66■■□□□ 1.54
CLDN4-201ENST00000340958 TRPM2O94759 1503 aa24.65■■□□□ 1.54
CLDN4-201ENST00000340958 FBXO31Q5XUX0 539 aaPredicted RBP24.65■■□□□ 1.54
CLDN4-201ENST00000340958 DCAF11Q8TEB1 546 aa24.65■■□□□ 1.54
CLDN4-201ENST00000340958 KDM2AQ9Y2K7 1162 aa24.65■■□□□ 1.54
CLDN4-201ENST00000340958 HSPA2P54652 639 aa24.65■■□□□ 1.54
CLDN4-201ENST00000340958 ZNF142P52746 1687 aaPredicted RBP24.61■■□□□ 1.53
CLDN4-201ENST00000340958 TNRQ92752 1358 aa24.59■■□□□ 1.53
CLDN4-201ENST00000340958 SPATA31D1Q6ZQQ2 1576 aa24.59■■□□□ 1.53
CLDN4-201ENST00000340958 ERVK-7P63135 1459 aa24.58■■□□□ 1.53
CLDN4-201ENST00000340958 ARHGAP31Q2M1Z3 1444 aa24.58■■□□□ 1.53
CLDN4-201ENST00000340958 NBPF8Q3BBV2 869 aa24.58■■□□□ 1.53
CLDN4-201ENST00000340958 CEP170BQ9Y4F5 1589 aaPredicted RBP24.58■■□□□ 1.53
CLDN4-201ENST00000340958 CLTCL1P53675 1640 aa24.56■■□□□ 1.52
CLDN4-201ENST00000340958 CHGAP10645 457 aaKnown RBP24.55■■□□□ 1.52
CLDN4-201ENST00000340958 A2ML1A8K2U0 1454 aa24.52■■□□□ 1.52
CLDN4-201ENST00000340958 UGGT1Q9NYU2 1555 aa24.52■■□□□ 1.52
CLDN4-201ENST00000340958 SPATA31E1Q6ZUB1 1445 aa24.51■■□□□ 1.51
CLDN4-201ENST00000340958 STRCQ7RTU9 1775 aa24.51■■□□□ 1.51
CLDN4-201ENST00000340958 NLRP1Q9C000 1473 aa24.49■■□□□ 1.51
CLDN4-201ENST00000340958 DIEXFQ68CQ4 756 aaKnown RBP24.49■■□□□ 1.51
CLDN4-201ENST00000340958 HIRIP3Q9BW71 556 aaPredicted RBP24.49■■□□□ 1.51
CLDN4-201ENST00000340958 EIF4G2P78344 907 aaKnown RBP eCLIP24.49■■□□□ 1.51
CLDN4-201ENST00000340958 NOS1P29475 1434 aa24.48■■□□□ 1.51
CLDN4-201ENST00000340958 KIF1BO60333 1816 aa24.46■■□□□ 1.51
CLDN4-201ENST00000340958 SYNMO15061 1565 aa24.46■■□□□ 1.51
CLDN4-201ENST00000340958 SLC52A1Q9NWF4 448 aa24.45■■□□□ 1.5
CLDN4-201ENST00000340958 STAC3Q96MF2 364 aa24.44■■□□□ 1.5
CLDN4-201ENST00000340958 HSPA5P11021 654 aaKnown RBP24.43■■□□□ 1.5
CLDN4-201ENST00000340958 PRAG1Q86YV5 1406 aa24.43■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms