RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 MLECQ14165 292 aa15.54■□□□□ 0.08
USP1-201ENST00000339950 NCOA1Q15788 1441 aa15.54■□□□□ 0.08
USP1-201ENST00000339950 MAGI3Q5TCQ9 1506 aa15.54■□□□□ 0.08
USP1-201ENST00000339950 ANO8Q9HCE9 1232 aaPredicted RBP15.54■□□□□ 0.08
USP1-201ENST00000339950 COG6Q9Y2V7 657 aa15.54■□□□□ 0.08
USP1-201ENST00000339950 CFAP70Q5T0N1 1121 aa15.54■□□□□ 0.08
USP1-201ENST00000339950 NPM1P06748 294 aaKnown RBP eCLIP15.53■□□□□ 0.08
USP1-201ENST00000339950 SUPT6HQ7KZ85 1726 aaKnown RBP15.53■□□□□ 0.08
USP1-201ENST00000339950 MORC1Q86VD1 984 aa15.53■□□□□ 0.08
USP1-201ENST00000339950 GRIN2BQ13224 1484 aa15.53■□□□□ 0.08
USP1-201ENST00000339950 KDM6BO15054 1643 aa15.53■□□□□ 0.08
USP1-201ENST00000339950 ARHGEF11O15085 1522 aa15.52■□□□□ 0.08
USP1-201ENST00000339950 GOLGA2Q08379 1002 aa15.52■□□□□ 0.07
USP1-201ENST00000339950 BCAR3O75815 825 aa15.51■□□□□ 0.07
USP1-201ENST00000339950 EFCAB2Q5VUJ9 269 aa15.51■□□□□ 0.07
USP1-201ENST00000339950 KIAA1107Q9UPP5 1409 aa15.51■□□□□ 0.07
USP1-201ENST00000339950 TCERG1O14776 1098 aaKnown RBP15.51■□□□□ 0.07
USP1-201ENST00000339950 SPAG9O60271 1321 aaKnown RBP15.51■□□□□ 0.07
USP1-201ENST00000339950 U2AF1L5P0DN76 240 aaPredicted RBP15.5■□□□□ 0.07
USP1-201ENST00000339950 U2AF1Q01081 240 aaKnown RBP eCLIP15.5■□□□□ 0.07
USP1-201ENST00000339950 PANK1Q8TE04 598 aa15.5■□□□□ 0.07
USP1-201ENST00000339950 CFAP43Q8NDM7 1665 aa15.49■□□□□ 0.07
USP1-201ENST00000339950 IL27Q8NEV9 243 aa15.48■□□□□ 0.07
USP1-201ENST00000339950 C9orf84Q5VXU9 1444 aa15.48■□□□□ 0.07
USP1-201ENST00000339950 SRPK2P78362 688 aaKnown RBP15.48■□□□□ 0.07
USP1-201ENST00000339950 TROQ12816 1431 aaPredicted RBP15.47■□□□□ 0.07
USP1-201ENST00000339950 MIA2Q96PC5 1412 aa15.47■□□□□ 0.07
USP1-201ENST00000339950 NUTM2FA1L443 756 aa15.47■□□□□ 0.07
USP1-201ENST00000339950 ELL2O00472 640 aaPredicted RBP15.47■□□□□ 0.07
USP1-201ENST00000339950 RPRD2Q5VT52 1461 aaKnown RBP15.47■□□□□ 0.07
USP1-201ENST00000339950 TPRNQ4KMQ1 711 aa15.46■□□□□ 0.07
USP1-201ENST00000339950 GZF1Q9H116 711 aaPredicted RBP15.46■□□□□ 0.07
USP1-201ENST00000339950 FTSJ3Q8IY81 847 aaKnown RBP15.45■□□□□ 0.06
USP1-201ENST00000339950 IQGAP2Q13576 1575 aa15.45■□□□□ 0.06
USP1-201ENST00000339950 PPP2R1AP30153 589 aa15.44■□□□□ 0.06
USP1-201ENST00000339950 UGGT2Q9NYU1 1516 aa15.44■□□□□ 0.06
USP1-201ENST00000339950 APBB1O00213 710 aa15.43■□□□□ 0.06
USP1-201ENST00000339950 CAMSAP2Q08AD1 1489 aa15.43■□□□□ 0.06
USP1-201ENST00000339950 HSP90AA1P07900 732 aaKnown RBP15.43■□□□□ 0.06
USP1-201ENST00000339950 PRKCSHP14314 528 aaPredicted RBP15.43■□□□□ 0.06
USP1-201ENST00000339950 CDCA8Q53HL2 280 aa15.43■□□□□ 0.06
USP1-201ENST00000339950 SLC12A5Q9H2X9 1139 aa15.43■□□□□ 0.06
USP1-201ENST00000339950 SMG6Q86US8 1419 aaKnown RBP15.42■□□□□ 0.06
USP1-201ENST00000339950 UPF2Q9HAU5 1272 aaKnown RBP15.42■□□□□ 0.06
USP1-201ENST00000339950 POGKQ9P215 609 aa15.42■□□□□ 0.06
USP1-201ENST00000339950 CUL7Q14999 1698 aa15.41■□□□□ 0.06
USP1-201ENST00000339950 DISP3Q9P2K9 1392 aa15.41■□□□□ 0.06
USP1-201ENST00000339950 FOXD4L1Q9NU39 408 aa15.4■□□□□ 0.06
USP1-201ENST00000339950 HECW1Q76N89 1606 aa15.4■□□□□ 0.06
USP1-201ENST00000339950 NUP153P49790 1475 aaKnown RBP15.4■□□□□ 0.06
USP1-201ENST00000339950 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.4■□□□□ 0.06
USP1-201ENST00000339950 ARID4BQ4LE39 1312 aaPredicted RBP15.4■□□□□ 0.06
USP1-201ENST00000339950 DHX29Q7Z478 1369 aaKnown RBP15.39■□□□□ 0.05
USP1-201ENST00000339950 DDRGK1Q96HY6 314 aa15.38■□□□□ 0.05
USP1-201ENST00000339950 BRD4O60885 1362 aaPredicted RBP15.38■□□□□ 0.05
USP1-201ENST00000339950 GPATCH8Q9UKJ3 1502 aaKnown RBP15.37■□□□□ 0.05
USP1-201ENST00000339950 PDE3BQ13370 1112 aa15.37■□□□□ 0.05
USP1-201ENST00000339950 MRC2Q9UBG0 1479 aa15.37■□□□□ 0.05
USP1-201ENST00000339950 ZBTB7CA1YPR0 619 aa15.36■□□□□ 0.05
USP1-201ENST00000339950 BACH2Q9BYV9 841 aa15.36■□□□□ 0.05
USP1-201ENST00000339950 KIAA0586Q9BVV6 1533 aa15.36■□□□□ 0.05
USP1-201ENST00000339950 CFAP53Q96M91 514 aa15.36■□□□□ 0.05
USP1-201ENST00000339950 CABP2Q9NPB3 220 aa15.36■□□□□ 0.05
USP1-201ENST00000339950 GGNBP2Q9H3C7 697 aa15.36■□□□□ 0.05
USP1-201ENST00000339950 BRPF3Q9ULD4 1205 aa15.36■□□□□ 0.05
USP1-201ENST00000339950 MINK1Q8N4C8 1332 aaPredicted RBP15.36■□□□□ 0.05
USP1-201ENST00000339950 MFAP1P55081 439 aaKnown RBP15.35■□□□□ 0.05
USP1-201ENST00000339950 CENPJQ9HC77 1338 aaPredicted RBP15.35■□□□□ 0.05
USP1-201ENST00000339950 ITPRIPQ8IWB1 547 aa15.35■□□□□ 0.05
USP1-201ENST00000339950 DENND4BO75064 1496 aaPredicted RBP15.35■□□□□ 0.05
USP1-201ENST00000339950 FBLN1P23142 703 aa15.35■□□□□ 0.05
USP1-201ENST00000339950 ROCK1Q13464 1354 aa15.35■□□□□ 0.05
USP1-201ENST00000339950 LAMC3Q9Y6N6 1575 aa15.35■□□□□ 0.05
USP1-201ENST00000339950 SPINK5Q9NQ38 1064 aaPredicted RBP15.34■□□□□ 0.05
USP1-201ENST00000339950 TSR2Q969E8 191 aaKnown RBP15.34■□□□□ 0.05
USP1-201ENST00000339950 TNNQ9UQP3 1299 aa15.34■□□□□ 0.05
USP1-201ENST00000339950 CTTNBP2Q8WZ74 1663 aa15.34■□□□□ 0.05
USP1-201ENST00000339950 MAPK8IP3Q9UPT6 1336 aa15.33■□□□□ 0.05
USP1-201ENST00000339950 WASHC2CQ9Y4E1 1318 aa15.33■□□□□ 0.04
USP1-201ENST00000339950 FRAT2O75474 233 aaPredicted RBP15.33■□□□□ 0.04
USP1-201ENST00000339950 MTHFSP49914 203 aa15.33■□□□□ 0.04
USP1-201ENST00000339950 SMC4Q9NTJ3 1288 aa15.32■□□□□ 0.04
USP1-201ENST00000339950 ARHGAP5Q13017 1502 aa15.32■□□□□ 0.04
USP1-201ENST00000339950 GRIN2AQ12879 1464 aa15.32■□□□□ 0.04
USP1-201ENST00000339950 PLEKHH2Q8IVE3 1493 aa15.32■□□□□ 0.04
USP1-201ENST00000339950 PZPP20742 1482 aa15.31■□□□□ 0.04
USP1-201ENST00000339950 DMRT2Q9Y5R5 561 aa15.31■□□□□ 0.04
USP1-201ENST00000339950 NFKBIBQ15653 356 aa15.31■□□□□ 0.04
USP1-201ENST00000339950 TCP11L2Q8N4U5 519 aa15.3■□□□□ 0.04
USP1-201ENST00000339950 FAM161AQ3B820 660 aa15.3■□□□□ 0.04
USP1-201ENST00000339950 RSPH4AQ5TD94 716 aa15.29■□□□□ 0.04
USP1-201ENST00000339950 KANK1Q14678 1352 aa15.29■□□□□ 0.04
USP1-201ENST00000339950 ADGRF5Q8IZF2 1346 aa15.29■□□□□ 0.04
USP1-201ENST00000339950 TESK2Q96S53 571 aa15.29■□□□□ 0.04
USP1-201ENST00000339950 TCOF1Q13428 1488 aaKnown RBP15.29■□□□□ 0.04
USP1-201ENST00000339950 TEX14Q8IWB6 1497 aa15.29■□□□□ 0.04
USP1-201ENST00000339950 PER1O15534 1290 aaPredicted RBP15.28■□□□□ 0.04
USP1-201ENST00000339950 KDM5BQ9UGL1 1544 aa15.28■□□□□ 0.04
USP1-201ENST00000339950 CENPQQ7L2Z9 268 aaPredicted RBP15.28■□□□□ 0.04
USP1-201ENST00000339950 C14orf37Q86TY3 774 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 157.2 ms