RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 RSF1Q96T23 1441 aaPredicted RBP5.19□□□□□ -1.58
NEDD4-201ENST00000338963 KCNH8Q96L42 1107 aa5.19□□□□□ -1.58
NEDD4-201ENST00000338963 UBTFP17480 764 aaKnown RBP5.18□□□□□ -1.58
NEDD4-201ENST00000338963 NOM1Q5C9Z4 860 aaKnown RBP5.18□□□□□ -1.58
NEDD4-201ENST00000338963 MRS2Q9HD23 443 aa5.18□□□□□ -1.58
NEDD4-201ENST00000338963 GOLGA3Q08378 1498 aa5.18□□□□□ -1.58
NEDD4-201ENST00000338963 KIF1CO43896 1103 aaKnown RBP5.18□□□□□ -1.58
NEDD4-201ENST00000338963 ZNF500O60304 480 aaPredicted RBP5.18□□□□□ -1.58
NEDD4-201ENST00000338963 PLCD3Q8N3E9 789 aa5.18□□□□□ -1.58
NEDD4-201ENST00000338963 GOLGA6L2Q8N9W4 650 aaPredicted RBP5.18□□□□□ -1.58
NEDD4-201ENST00000338963 R3HCC1Q9Y3T6 440 aaKnown RBP5.18□□□□□ -1.58
NEDD4-201ENST00000338963 CUX2O14529 1486 aa5.18□□□□□ -1.58
NEDD4-201ENST00000338963 SCAPERQ9BY12 1400 aa5.18□□□□□ -1.58
NEDD4-201ENST00000338963 CHMP5Q9NZZ3 219 aa5.18□□□□□ -1.58
NEDD4-201ENST00000338963 CGNQ9P2M7 1197 aaKnown RBP5.18□□□□□ -1.58
NEDD4-201ENST00000338963 CLIP1P30622 1438 aa5.17□□□□□ -1.58
NEDD4-201ENST00000338963 TTC36A6NLP5 189 aa5.17□□□□□ -1.58
NEDD4-201ENST00000338963 TPM3P06753 285 aa5.17□□□□□ -1.58
NEDD4-201ENST00000338963 PUS7Q96PZ0 661 aaKnown RBP5.17□□□□□ -1.58
NEDD4-201ENST00000338963 KTN1Q86UP2 1357 aaKnown RBP5.17□□□□□ -1.58
NEDD4-201ENST00000338963 ZSCAN20P17040 1043 aaPredicted RBP5.17□□□□□ -1.58
NEDD4-201ENST00000338963 SATB1Q01826 763 aa5.17□□□□□ -1.58
NEDD4-201ENST00000338963 CASC1Q6TDU7 716 aa5.17□□□□□ -1.58
NEDD4-201ENST00000338963 IBTKQ9P2D0 1353 aaPredicted RBP5.17□□□□□ -1.58
NEDD4-201ENST00000338963 CENPQQ7L2Z9 268 aaPredicted RBP5.17□□□□□ -1.58
NEDD4-201ENST00000338963 BSDC1Q9NW68 430 aaPredicted RBP5.17□□□□□ -1.58
NEDD4-201ENST00000338963 CWC15Q9P013 229 aaKnown RBP5.17□□□□□ -1.58
NEDD4-201ENST00000338963 POGKQ9P215 609 aa5.17□□□□□ -1.58
NEDD4-201ENST00000338963 VPS8Q8N3P4 1428 aa5.16□□□□□ -1.58
NEDD4-201ENST00000338963 OGFRQ9NZT2 677 aa5.16□□□□□ -1.58
NEDD4-201ENST00000338963 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.16□□□□□ -1.582e-6■■■□□ 17.5
NEDD4-201ENST00000338963 KIAA2012Q0VF49 1180 aa5.16□□□□□ -1.58
NEDD4-201ENST00000338963 BANK1Q8NDB2 785 aa5.16□□□□□ -1.58
NEDD4-201ENST00000338963 SLC26A8Q96RN1 970 aa5.16□□□□□ -1.58
NEDD4-201ENST00000338963 DIAPH3Q9NSV4 1193 aa5.16□□□□□ -1.58
NEDD4-201ENST00000338963 RPAINQ86UA6 219 aa5.16□□□□□ -1.58
NEDD4-201ENST00000338963 PAIP2Q9BPZ3 127 aaKnown RBP5.16□□□□□ -1.58
NEDD4-201ENST00000338963 PPP1R9BQ96SB3 815 aa5.16□□□□□ -1.58
NEDD4-201ENST00000338963 CIZ1Q9ULV3 898 aaPredicted RBP5.16□□□□□ -1.58
NEDD4-201ENST00000338963 KCNJ4P48050 445 aa5.15□□□□□ -1.58
NEDD4-201ENST00000338963 RIPK4P57078 832 aa5.15□□□□□ -1.58
NEDD4-201ENST00000338963 NBPF11Q86T75 865 aa5.15□□□□□ -1.58
NEDD4-201ENST00000338963 RAI14Q9P0K7 980 aa5.15□□□□□ -1.58
NEDD4-201ENST00000338963 NEFHP12036 1026 aa5.15□□□□□ -1.59
NEDD4-201ENST00000338963 NBPF9Q3BBW0 867 aa5.15□□□□□ -1.59
NEDD4-201ENST00000338963 SLKQ9H2G2 1235 aaPredicted RBP5.15□□□□□ -1.59
NEDD4-201ENST00000338963 TONSLQ96HA7 1378 aa5.15□□□□□ -1.59
NEDD4-201ENST00000338963 NRDCO43847 1150 aa5.15□□□□□ -1.59
NEDD4-201ENST00000338963 MCM4P33991 863 aa5.15□□□□□ -1.59
NEDD4-201ENST00000338963 SYCP1Q15431 976 aa5.15□□□□□ -1.59
NEDD4-201ENST00000338963 GPATCH11Q8N954 259 aa5.15□□□□□ -1.59
NEDD4-201ENST00000338963 NOL7Q9UMY1 257 aaKnown RBP5.15□□□□□ -1.59
NEDD4-201ENST00000338963 RRP1P56182 461 aaKnown RBP5.14□□□□□ -1.59
NEDD4-201ENST00000338963 TRAK2O60296 914 aa5.14□□□□□ -1.59
NEDD4-201ENST00000338963 NCAPGQ9BPX3 1015 aa5.14□□□□□ -1.59
NEDD4-201ENST00000338963 KIF3CO14782 793 aa5.14□□□□□ -1.59
NEDD4-201ENST00000338963 GTF2A1P52655 376 aaPredicted RBP5.13□□□□□ -1.59
NEDD4-201ENST00000338963 ZMYM3Q14202 1370 aa5.13□□□□□ -1.59
NEDD4-201ENST00000338963 LIG1P18858 919 aa5.13□□□□□ -1.59
NEDD4-201ENST00000338963 IRX5P78411 483 aaPredicted RBP5.13□□□□□ -1.59
NEDD4-201ENST00000338963 HSPA5P11021 654 aaKnown RBP5.13□□□□□ -1.59
NEDD4-201ENST00000338963 NBPF6Q5VWK0 638 aa5.13□□□□□ -1.59
NEDD4-201ENST00000338963 AEBP2Q6ZN18 517 aaPredicted RBP5.13□□□□□ -1.59
NEDD4-201ENST00000338963 NBPF5PQ86XG9 351 aaPredicted RBP5.13□□□□□ -1.59
NEDD4-201ENST00000338963 NBPF4Q96M43 638 aa5.13□□□□□ -1.59
NEDD4-201ENST00000338963 SMC4Q9NTJ3 1288 aa5.13□□□□□ -1.59
NEDD4-201ENST00000338963 CEP83Q9Y592 693 aa5.13□□□□□ -1.59
NEDD4-201ENST00000338963 VGLL3A8MV65 326 aa5.13□□□□□ -1.59
NEDD4-201ENST00000338963 TACO1Q9BSH4 297 aaKnown RBP5.13□□□□□ -1.59
NEDD4-201ENST00000338963 PRDM10Q9NQV6 1147 aa5.13□□□□□ -1.59
NEDD4-201ENST00000338963 TRDNQ13061 729 aa5.13□□□□□ -1.59
NEDD4-201ENST00000338963 CAVIN1Q6NZI2 390 aaKnown RBP5.13□□□□□ -1.59
NEDD4-201ENST00000338963 MYRIPQ8NFW9 859 aa5.13□□□□□ -1.59
NEDD4-201ENST00000338963 ZNF592Q92610 1267 aa5.13□□□□□ -1.59
NEDD4-201ENST00000338963 PSEN1P49768 467 aa5.12□□□□□ -1.59
NEDD4-201ENST00000338963 TEX35Q5T0J7 233 aa5.12□□□□□ -1.59
NEDD4-201ENST00000338963 FHAD1B1AJZ9 1412 aa5.12□□□□□ -1.59
NEDD4-201ENST00000338963 MAPK8IP3Q9UPT6 1336 aa5.12□□□□□ -1.59
NEDD4-201ENST00000338963 NASPP49321 788 aaPredicted RBP5.12□□□□□ -1.59
NEDD4-201ENST00000338963 RNF20Q5VTR2 975 aa5.12□□□□□ -1.59
NEDD4-201ENST00000338963 GPS2Q13227 327 aa5.12□□□□□ -1.59
NEDD4-201ENST00000338963 CCDC91Q7Z6B0 441 aa5.12□□□□□ -1.59
NEDD4-201ENST00000338963 FAM9BQ8IZU0 186 aa5.12□□□□□ -1.59
NEDD4-201ENST00000338963 CARD10Q9BWT7 1032 aa5.12□□□□□ -1.59
NEDD4-201ENST00000338963 EIF3AQ14152 1382 aaKnown RBP5.12□□□□□ -1.59
NEDD4-201ENST00000338963 CNTLNQ9NXG0 1405 aa5.12□□□□□ -1.59
NEDD4-201ENST00000338963 GTF2F1P35269 517 aaKnown RBP eCLIP5.12□□□□□ -1.59
NEDD4-201ENST00000338963 RASSF4Q9H2L5 321 aa5.12□□□□□ -1.59
NEDD4-201ENST00000338963 DEF6Q9H4E7 631 aa5.12□□□□□ -1.59
NEDD4-201ENST00000338963 ZKSCAN5Q9Y2L8 839 aa5.12□□□□□ -1.59
NEDD4-201ENST00000338963 ANAPC15P60006 121 aa5.11□□□□□ -1.59
NEDD4-201ENST00000338963 TERF2IPQ9NYB0 399 aa5.11□□□□□ -1.59
NEDD4-201ENST00000338963 USP8P40818 1118 aa5.11□□□□□ -1.59
NEDD4-201ENST00000338963 RABEP1Q15276 862 aa5.11□□□□□ -1.59
NEDD4-201ENST00000338963 RB1CC1Q8TDY2 1594 aa5.11□□□□□ -1.59
NEDD4-201ENST00000338963 AEBP1Q8IUX7 1158 aa5.11□□□□□ -1.59
NEDD4-201ENST00000338963 TDO2P48775 406 aa5.11□□□□□ -1.59
NEDD4-201ENST00000338963 CCDC172P0C7W6 258 aa5.11□□□□□ -1.59
NEDD4-201ENST00000338963 TRIM6-TRIM34B2RNG4 842 aa5.11□□□□□ -1.59
NEDD4-201ENST00000338963 OS9Q13438 667 aaPredicted RBP5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms