RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 ARID3CA6NKF2 412 aa15.55■□□□□ 0.08
SHMT2-201ENST00000328923 PAXIP1Q6ZW49 1069 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-201ENST00000328923 SMG6Q86US8 1419 aaKnown RBP15.55■□□□□ 0.08
SHMT2-201ENST00000328923 HSPA5P11021 654 aaKnown RBP15.54■□□□□ 0.08
SHMT2-201ENST00000328923 POGKQ9P215 609 aa15.54■□□□□ 0.08
SHMT2-201ENST00000328923 GCC2Q8IWJ2 1684 aa15.54■□□□□ 0.08
SHMT2-201ENST00000328923 PRKRIP1Q9H875 184 aaPredicted RBP15.54■□□□□ 0.08
SHMT2-201ENST00000328923 PTPRKQ15262 1439 aa15.53■□□□□ 0.08
SHMT2-201ENST00000328923 RNF123Q5XPI4 1314 aa15.52■□□□□ 0.08
SHMT2-201ENST00000328923 EIF4G2P78344 907 aaKnown RBP eCLIP15.52■□□□□ 0.08
SHMT2-201ENST00000328923 CCDC7Q96M83 1385 aa15.51■□□□□ 0.07
SHMT2-201ENST00000328923 PLB1Q6P1J6 1458 aa15.5■□□□□ 0.07
SHMT2-201ENST00000328923 ABCA8O94911 1581 aa15.5■□□□□ 0.07
SHMT2-201ENST00000328923 ARXQ96QS3 562 aa15.5■□□□□ 0.07
SHMT2-201ENST00000328923 STAC3Q96MF2 364 aa15.49■□□□□ 0.07
SHMT2-201ENST00000328923 TCOF1Q13428 1488 aaKnown RBP15.49■□□□□ 0.07
SHMT2-201ENST00000328923 L1TD1Q5T7N2 865 aaKnown RBP15.49■□□□□ 0.07
SHMT2-201ENST00000328923 MRS2Q9HD23 443 aa15.48■□□□□ 0.07
SHMT2-201ENST00000328923 MS4A1P11836 297 aa15.47■□□□□ 0.07
SHMT2-201ENST00000328923 MIA2Q96PC5 1412 aa15.47■□□□□ 0.07
SHMT2-201ENST00000328923 ZHX1Q9UKY1 873 aaPredicted RBP15.46■□□□□ 0.07
SHMT2-201ENST00000328923 PTPRGP23470 1445 aa15.46■□□□□ 0.07
SHMT2-201ENST00000328923 DENND4BO75064 1496 aaPredicted RBP15.45■□□□□ 0.06
SHMT2-201ENST00000328923 CANXP27824 592 aaKnown RBP15.45■□□□□ 0.06
SHMT2-201ENST00000328923 TPM2P07951 284 aa15.44■□□□□ 0.06
SHMT2-201ENST00000328923 XRCC6P12956 609 aaKnown RBP eCLIP15.43■□□□□ 0.06
SHMT2-201ENST00000328923 PANK2Q9BZ23 570 aa15.43■□□□□ 0.06
SHMT2-201ENST00000328923 NUDCQ9Y266 331 aa15.43■□□□□ 0.06
SHMT2-201ENST00000328923 TROQ12816 1431 aaPredicted RBP15.42■□□□□ 0.06
SHMT2-201ENST00000328923 SKAP1Q86WV1 359 aa15.42■□□□□ 0.06
SHMT2-201ENST00000328923 IPO4Q8TEX9 1081 aaKnown RBP15.42■□□□□ 0.06
SHMT2-201ENST00000328923 KIF13AQ9H1H9 1805 aa15.41■□□□□ 0.06
SHMT2-201ENST00000328923 SPATA31E1Q6ZUB1 1445 aa15.4■□□□□ 0.06
SHMT2-201ENST00000328923 ADCY10Q96PN6 1610 aa15.39■□□□□ 0.05
SHMT2-201ENST00000328923 FOXD1Q16676 465 aa15.39■□□□□ 0.05
SHMT2-201ENST00000328923 ABCC2Q92887 1545 aa15.38■□□□□ 0.05
SHMT2-201ENST00000328923 EXOC6Q8TAG9 804 aa15.38■□□□□ 0.05
SHMT2-201ENST00000328923 ERBB4Q15303 1308 aa15.38■□□□□ 0.05
SHMT2-201ENST00000328923 UHRF1BP1LA0JNW5 1464 aa15.37■□□□□ 0.05
SHMT2-201ENST00000328923 RSPH4AQ5TD94 716 aa15.37■□□□□ 0.05
SHMT2-201ENST00000328923 KIF14Q15058 1648 aa15.37■□□□□ 0.05
SHMT2-201ENST00000328923 TEX14Q8IWB6 1497 aa15.36■□□□□ 0.05
SHMT2-201ENST00000328923 ATP10BO94823 1461 aa15.36■□□□□ 0.05
SHMT2-201ENST00000328923 SMAP1Q8IYB5 467 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-201ENST00000328923 RPRD2Q5VT52 1461 aaKnown RBP15.36■□□□□ 0.05
SHMT2-201ENST00000328923 ITSN2Q9NZM3 1697 aa15.35■□□□□ 0.05
SHMT2-201ENST00000328923 CNGB1Q14028 1251 aaPredicted RBP15.35■□□□□ 0.05
SHMT2-201ENST00000328923 CHIC2Q9UKJ5 165 aa15.35■□□□□ 0.05
SHMT2-201ENST00000328923 SENP3-EIF4A1A0A087X0R7 540 aa15.35■□□□□ 0.05
SHMT2-201ENST00000328923 ESPNB1AK53 854 aa15.35■□□□□ 0.05
SHMT2-201ENST00000328923 PRDM10Q9NQV6 1147 aa15.35■□□□□ 0.05
SHMT2-201ENST00000328923 DNMT1P26358 1616 aaKnown RBP15.34■□□□□ 0.05
SHMT2-201ENST00000328923 KIF7Q2M1P5 1343 aa15.34■□□□□ 0.05
SHMT2-201ENST00000328923 RRP7BPQ9NSQ0 103 aa15.34■□□□□ 0.05
SHMT2-201ENST00000328923 GOLGA6L3A6NEY3 463 aa15.33■□□□□ 0.04
SHMT2-201ENST00000328923 DAPK1P53355 1430 aa15.33■□□□□ 0.04
SHMT2-201ENST00000328923 L3MBTL2Q969R5 705 aa15.33■□□□□ 0.04
SHMT2-201ENST00000328923 ZNF644Q9H582 1327 aaPredicted RBP15.33■□□□□ 0.04
SHMT2-201ENST00000328923 GPATCH8Q9UKJ3 1502 aaKnown RBP15.32■□□□□ 0.04
SHMT2-201ENST00000328923 DHX29Q7Z478 1369 aaKnown RBP15.32■□□□□ 0.04
SHMT2-201ENST00000328923 KIAA1211Q6ZU35 1233 aa15.32■□□□□ 0.04
SHMT2-201ENST00000328923 PLEKHD1A6NEE1 506 aa15.32■□□□□ 0.04
SHMT2-201ENST00000328923 PLCD3Q8N3E9 789 aa15.32■□□□□ 0.04
SHMT2-201ENST00000328923 KDM6BO15054 1643 aa15.31■□□□□ 0.04
SHMT2-201ENST00000328923 ABCC5O15440 1437 aa15.31■□□□□ 0.04
SHMT2-201ENST00000328923 ARID3AQ99856 593 aa15.31■□□□□ 0.04
SHMT2-201ENST00000328923 FSD2A1L4K1 749 aa15.3■□□□□ 0.04
SHMT2-201ENST00000328923 RIPK4P57078 832 aa15.3■□□□□ 0.04
SHMT2-201ENST00000328923 CFDP1Q9UEE9 299 aaPredicted RBP15.3■□□□□ 0.04
SHMT2-201ENST00000328923 CAMSAP2Q08AD1 1489 aa15.29■□□□□ 0.04
SHMT2-201ENST00000328923 ZCCHC11Q5TAX3 1644 aaKnown RBP15.29■□□□□ 0.04
SHMT2-201ENST00000328923 ROCK1Q13464 1354 aa15.29■□□□□ 0.04
SHMT2-201ENST00000328923 ANKRD30BQ9BXX2 1392 aa15.29■□□□□ 0.04
SHMT2-201ENST00000328923 VGLL3A8MV65 326 aa15.28■□□□□ 0.04
SHMT2-201ENST00000328923 ZNF830Q96NB3 372 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-201ENST00000328923 MPHOSPH9Q99550 1183 aa15.28■□□□□ 0.04
SHMT2-201ENST00000328923 TMEM51Q9NW97 253 aa15.28■□□□□ 0.04
SHMT2-201ENST00000328923 CDC42BPAQ5VT25 1732 aa15.28■□□□□ 0.04
SHMT2-201ENST00000328923 FAM13BQ9NYF5 915 aa15.28■□□□□ 0.04
SHMT2-201ENST00000328923 ABCC10Q5T3U5 1492 aa15.28■□□□□ 0.04
SHMT2-201ENST00000328923 NPM1P06748 294 aaKnown RBP eCLIP15.27■□□□□ 0.03
SHMT2-201ENST00000328923 ZNF326Q5BKZ1 582 aaKnown RBP15.26■□□□□ 0.03
SHMT2-201ENST00000328923 RRP1P56182 461 aaKnown RBP15.26■□□□□ 0.03
SHMT2-201ENST00000328923 DIP2BQ9P265 1576 aa15.25■□□□□ 0.03
SHMT2-201ENST00000328923 FAM69CQ0P6D2 419 aa15.25■□□□□ 0.03
SHMT2-201ENST00000328923 GZF1Q9H116 711 aaPredicted RBP15.25■□□□□ 0.03
SHMT2-201ENST00000328923 DMTNQ08495 405 aa15.24■□□□□ 0.03
SHMT2-201ENST00000328923 MBD5Q9P267 1494 aa15.24■□□□□ 0.03
SHMT2-201ENST00000328923 NBPF8Q3BBV2 869 aa15.24■□□□□ 0.03
SHMT2-201ENST00000328923 PPP4R3BQ5MIZ7 849 aa15.24■□□□□ 0.03
SHMT2-201ENST00000328923 LRPPRCP42704 1394 aaKnown RBP15.24■□□□□ 0.03
SHMT2-201ENST00000328923 MAP7D2Q96T17 732 aa15.23■□□□□ 0.03
SHMT2-201ENST00000328923 CROCC2H7BZ55 1655 aa15.23■□□□□ 0.03
SHMT2-201ENST00000328923 ROCK2O75116 1388 aaKnown RBP15.23■□□□□ 0.03
SHMT2-201ENST00000328923 UTP14CQ5TAP6 766 aaKnown RBP15.23■□□□□ 0.03
SHMT2-201ENST00000328923 ZNF777Q9ULD5 760 aaPredicted RBP15.23■□□□□ 0.03
SHMT2-201ENST00000328923 KTN1Q86UP2 1357 aaKnown RBP15.23■□□□□ 0.03
SHMT2-201ENST00000328923 NCLP19338 710 aaKnown RBP15.22■□□□□ 0.03
SHMT2-201ENST00000328923 TSPOAP1O95153 1857 aa15.22■□□□□ 0.03
SHMT2-201ENST00000328923 ADGBQ8N7X0 1667 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms