RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ERICH3Q5RHP9 1530 aa14.45□□□□□ -0.1
VPS39-201ENST00000318006 CALD1Q05682 793 aaKnown RBP14.44□□□□□ -0.1
VPS39-201ENST00000318006 KIF15Q9NS87 1388 aa14.44□□□□□ -0.1
VPS39-201ENST00000318006 KCNJ4P48050 445 aa14.44□□□□□ -0.1
VPS39-201ENST00000318006 PDE3BQ13370 1112 aa14.44□□□□□ -0.1
VPS39-201ENST00000318006 FGD1P98174 961 aa14.44□□□□□ -0.1
VPS39-201ENST00000318006 IPO8O15397 1037 aaKnown RBP14.43□□□□□ -0.1
VPS39-201ENST00000318006 PMFBP1Q8TBY8 1022 aa14.43□□□□□ -0.1
VPS39-201ENST00000318006 TERF2IPQ9NYB0 399 aa14.43□□□□□ -0.1
VPS39-201ENST00000318006 PRXQ9BXM0 1461 aa14.43□□□□□ -0.1
VPS39-201ENST00000318006 TOPBP1Q92547 1522 aa14.43□□□□□ -0.1
VPS39-201ENST00000318006 DDX11L8A8MPP1 907 aa14.43□□□□□ -0.1
VPS39-201ENST00000318006 CASKIN1Q8WXD9 1431 aa14.43□□□□□ -0.1
VPS39-201ENST00000318006 RTF1Q92541 710 aaKnown RBP14.42□□□□□ -0.1
VPS39-201ENST00000318006 PRKRIP1Q9H875 184 aaPredicted RBP14.42□□□□□ -0.1
VPS39-201ENST00000318006 ARAP1Q96P48 1450 aa14.42□□□□□ -0.1
VPS39-201ENST00000318006 GOLGA2Q08379 1002 aa14.42□□□□□ -0.1
VPS39-201ENST00000318006 USP47Q96K76 1375 aa14.41□□□□□ -0.1
VPS39-201ENST00000318006 MYBBP1AQ9BQG0 1328 aaKnown RBP14.41□□□□□ -0.1
VPS39-201ENST00000318006 OS9Q13438 667 aaPredicted RBP14.41□□□□□ -0.1
VPS39-201ENST00000318006 MFAP1P55081 439 aaKnown RBP14.41□□□□□ -0.1
VPS39-201ENST00000318006 POLA1P09884 1462 aaPredicted RBP14.41□□□□□ -0.1
VPS39-201ENST00000318006 NUTM2DQ5VT03 806 aaPredicted RBP14.41□□□□□ -0.1
VPS39-201ENST00000318006 ZNF644Q9H582 1327 aaPredicted RBP14.4□□□□□ -0.1
VPS39-201ENST00000318006 TRAK1Q9UPV9 953 aa14.4□□□□□ -0.1
VPS39-201ENST00000318006 UACAQ9BZF9 1416 aa14.4□□□□□ -0.1
VPS39-201ENST00000318006 PANK3Q9H999 370 aa14.4□□□□□ -0.1
VPS39-201ENST00000318006 FAM161AQ3B820 660 aa14.39□□□□□ -0.11
VPS39-201ENST00000318006 SLC4A3P48751 1232 aa14.38□□□□□ -0.11
VPS39-201ENST00000318006 NCOA2Q15596 1464 aa14.37□□□□□ -0.11
VPS39-201ENST00000318006 FYCO1Q9BQS8 1478 aa14.37□□□□□ -0.11
VPS39-201ENST00000318006 CCDC146Q8IYE0 955 aa14.37□□□□□ -0.11
VPS39-201ENST00000318006 GRIN2BQ13224 1484 aa14.36□□□□□ -0.11
VPS39-201ENST00000318006 CENPQQ7L2Z9 268 aaPredicted RBP14.36□□□□□ -0.11
VPS39-201ENST00000318006 SKOR2Q2VWA4 1001 aaPredicted RBP14.35□□□□□ -0.11
VPS39-201ENST00000318006 ZBED9Q6R2W3 1325 aa14.35□□□□□ -0.11
VPS39-201ENST00000318006 PAK3O75914 559 aaPredicted RBP14.35□□□□□ -0.11
VPS39-201ENST00000318006 ITPRIPQ8IWB1 547 aa14.34□□□□□ -0.11
VPS39-201ENST00000318006 RRBP1Q9P2E9 1410 aaKnown RBP14.34□□□□□ -0.11
VPS39-201ENST00000318006 VGFO15240 615 aaPredicted RBP14.34□□□□□ -0.11
VPS39-201ENST00000318006 NAP1L2Q9ULW6 460 aaPredicted RBP14.34□□□□□ -0.11
VPS39-201ENST00000318006 DNMBPQ6XZF7 1577 aa14.34□□□□□ -0.11
VPS39-201ENST00000318006 EID1Q9Y6B2 187 aa14.33□□□□□ -0.11
VPS39-201ENST00000318006 PHF14O94880 888 aa14.33□□□□□ -0.12
VPS39-201ENST00000318006 OSCARQ8IYS5 282 aa14.32□□□□□ -0.12
VPS39-201ENST00000318006 ANO8Q9HCE9 1232 aaPredicted RBP14.32□□□□□ -0.12
VPS39-201ENST00000318006 HTATSF1O43719 755 aaKnown RBP14.32□□□□□ -0.12
VPS39-201ENST00000318006 SMC4Q9NTJ3 1288 aa14.32□□□□□ -0.12
VPS39-201ENST00000318006 MRC2Q9UBG0 1479 aa14.32□□□□□ -0.12
VPS39-201ENST00000318006 ANKRD50Q9ULJ7 1429 aa14.32□□□□□ -0.12
VPS39-201ENST00000318006 CENPJQ9HC77 1338 aaPredicted RBP14.32□□□□□ -0.12
VPS39-201ENST00000318006 RRP1P56182 461 aaKnown RBP14.31□□□□□ -0.12
VPS39-201ENST00000318006 KIAA1211Q6ZU35 1233 aa14.3□□□□□ -0.12
VPS39-201ENST00000318006 EXOC6Q8TAG9 804 aa14.3□□□□□ -0.12
VPS39-201ENST00000318006 DDX49Q9Y6V7 483 aaKnown RBP14.3□□□□□ -0.12
VPS39-201ENST00000318006 TAOK2Q9UL54 1235 aa14.3□□□□□ -0.12
VPS39-201ENST00000318006 PRKCSHP14314 528 aaPredicted RBP14.29□□□□□ -0.12
VPS39-201ENST00000318006 PKNOX2Q96KN3 472 aa14.29□□□□□ -0.12
VPS39-201ENST00000318006 CSPP1Q1MSJ5 1256 aa14.29□□□□□ -0.12
VPS39-201ENST00000318006 FOXD4L1Q9NU39 408 aa14.29□□□□□ -0.12
VPS39-201ENST00000318006 EFCAB5A4FU69 1503 aa14.29□□□□□ -0.12
VPS39-201ENST00000318006 PRDM2Q13029 1718 aa14.29□□□□□ -0.12
VPS39-201ENST00000318006 EVC2Q86UK5 1308 aa14.29□□□□□ -0.12
VPS39-201ENST00000318006 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.29□□□□□ -0.12
VPS39-201ENST00000318006 FAM13BQ9NYF5 915 aa14.28□□□□□ -0.12
VPS39-201ENST00000318006 CCDC7Q96M83 1385 aa14.28□□□□□ -0.12
VPS39-201ENST00000318006 APBB1O00213 710 aa14.28□□□□□ -0.12
VPS39-201ENST00000318006 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.28□□□□□ -0.12
VPS39-201ENST00000318006 NGDNQ8NEJ9 315 aaKnown RBP14.28□□□□□ -0.12
VPS39-201ENST00000318006 CLUAP1Q96AJ1 413 aa14.28□□□□□ -0.12
VPS39-201ENST00000318006 FAM43AQ8N2R8 423 aa14.28□□□□□ -0.12
VPS39-201ENST00000318006 GOLGA6L1Q8N7Z2 621 aa14.28□□□□□ -0.12
VPS39-201ENST00000318006 CGNL1Q0VF96 1302 aa14.28□□□□□ -0.12
VPS39-201ENST00000318006 CYB5RLQ6IPT4 315 aa14.27□□□□□ -0.12
VPS39-201ENST00000318006 LMOD3Q0VAK6 560 aa14.27□□□□□ -0.12
VPS39-201ENST00000318006 STAC3Q96MF2 364 aa14.27□□□□□ -0.12
VPS39-201ENST00000318006 CHMP4AQ9BY43 222 aa14.27□□□□□ -0.12
VPS39-201ENST00000318006 KIF7Q2M1P5 1343 aa14.27□□□□□ -0.13
VPS39-201ENST00000318006 NFKBIBQ15653 356 aa14.27□□□□□ -0.13
VPS39-201ENST00000318006 TPM4P67936 248 aa14.26□□□□□ -0.13
VPS39-201ENST00000318006 STK31Q9BXU1 1019 aa14.26□□□□□ -0.13
VPS39-201ENST00000318006 LAMC3Q9Y6N6 1575 aa14.26□□□□□ -0.13
VPS39-201ENST00000318006 ZNF771Q7L3S4 317 aaPredicted RBP14.26□□□□□ -0.13
VPS39-201ENST00000318006 ST18O60284 1047 aa14.25□□□□□ -0.13
VPS39-201ENST00000318006 RRP7AQ9Y3A4 280 aaKnown RBP14.25□□□□□ -0.13
VPS39-201ENST00000318006 ABCA10Q8WWZ4 1543 aa14.25□□□□□ -0.13
VPS39-201ENST00000318006 NUTM2FA1L443 756 aa14.24□□□□□ -0.13
VPS39-201ENST00000318006 CSB-PGBD3P0DP91 1061 aa14.24□□□□□ -0.13
VPS39-201ENST00000318006 CHMP5Q9NZZ3 219 aa14.24□□□□□ -0.13
VPS39-201ENST00000318006 BIVM-ERCC5R4GMW8 1640 aa14.23□□□□□ -0.13
VPS39-201ENST00000318006 IFT140Q96RY7 1462 aa14.23□□□□□ -0.13
VPS39-201ENST00000318006 AMPHP49418 695 aa14.23□□□□□ -0.13
VPS39-201ENST00000318006 CRBNQ96SW2 442 aa14.23□□□□□ -0.13
VPS39-201ENST00000318006 MAP7D2Q96T17 732 aa14.23□□□□□ -0.13
VPS39-201ENST00000318006 E9PSI1 815 aa14.23□□□□□ -0.13
VPS39-201ENST00000318006 NPHP1O15259 732 aa14.23□□□□□ -0.13
VPS39-201ENST00000318006 IL27Q8NEV9 243 aa14.22□□□□□ -0.13
VPS39-201ENST00000318006 MIA2Q96PC5 1412 aa14.22□□□□□ -0.13
VPS39-201ENST00000318006 SYNJ2O15056 1496 aa14.22□□□□□ -0.13
VPS39-201ENST00000318006 MINK1Q8N4C8 1332 aaPredicted RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms