RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 POGZQ7Z3K3 1410 aa20.33■□□□□ 0.84
C9orf3-202ENST00000297979 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.33■□□□□ 0.841e-6■■□□□ 11.7
C9orf3-202ENST00000297979 KDM5CP41229 1560 aa20.32■□□□□ 0.84
C9orf3-202ENST00000297979 KIDINS220Q9ULH0 1771 aa20.32■□□□□ 0.84
C9orf3-202ENST00000297979 DEPDC5O75140 1603 aa20.3■□□□□ 0.84
C9orf3-202ENST00000297979 MYT1LQ9UL68 1186 aa20.3■□□□□ 0.84
C9orf3-202ENST00000297979 EIF2AK4Q9P2K8 1649 aaKnown RBP20.3■□□□□ 0.84
C9orf3-202ENST00000297979 DIP2BQ9P265 1576 aa20.27■□□□□ 0.84
C9orf3-202ENST00000297979 DHX29Q7Z478 1369 aaKnown RBP20.27■□□□□ 0.84
C9orf3-202ENST00000297979 HECW2Q9P2P5 1572 aa20.27■□□□□ 0.83
C9orf3-202ENST00000297979 MLH3Q9UHC1 1453 aa20.26■□□□□ 0.83
C9orf3-202ENST00000297979 CCDC144AA2RUR9 1427 aa20.22■□□□□ 0.83
C9orf3-202ENST00000297979 PRDM15P57071 1507 aaPredicted RBP20.22■□□□□ 0.83
C9orf3-202ENST00000297979 PLA2R1Q13018 1463 aa20.22■□□□□ 0.83
C9orf3-202ENST00000297979 A2MP01023 1474 aa20.21■□□□□ 0.83
C9orf3-202ENST00000297979 VWDEQ8N2E2 1590 aa20.21■□□□□ 0.83
C9orf3-202ENST00000297979 NBPF8Q3BBV2 869 aa20.21■□□□□ 0.83
C9orf3-202ENST00000297979 ATP10AO60312 1499 aa20.21■□□□□ 0.83
C9orf3-202ENST00000297979 FAM69CQ0P6D2 419 aa20.2■□□□□ 0.82
C9orf3-202ENST00000297979 KANK1Q14678 1352 aa20.2■□□□□ 0.82
C9orf3-202ENST00000297979 TET3O43151 1660 aa20.2■□□□□ 0.82
C9orf3-202ENST00000297979 KIF3BO15066 747 aa20.2■□□□□ 0.82
C9orf3-202ENST00000297979 RICTORQ6R327 1708 aa20.2■□□□□ 0.82
C9orf3-202ENST00000297979 MROH1Q8NDA8 1641 aa20.2■□□□□ 0.82
C9orf3-202ENST00000297979 E9PCH4 1651 aa20.19■□□□□ 0.82
C9orf3-202ENST00000297979 HIRIP3Q9BW71 556 aaPredicted RBP20.19■□□□□ 0.82
C9orf3-202ENST00000297979 MIER1Q8N108 512 aa20.19■□□□□ 0.82
C9orf3-202ENST00000297979 ABCA6Q8N139 1617 aa20.18■□□□□ 0.82
C9orf3-202ENST00000297979 FRMPD1Q5SYB0 1578 aa20.17■□□□□ 0.82
C9orf3-202ENST00000297979 RNF17Q9BXT8 1623 aaKnown RBP20.17■□□□□ 0.82
C9orf3-202ENST00000297979 RAPGEF3O95398 923 aa20.16■□□□□ 0.82
C9orf3-202ENST00000297979 UHRF1BP1Q6BDS2 1440 aa20.15■□□□□ 0.82
C9orf3-202ENST00000297979 EIF4G2P78344 907 aaKnown RBP eCLIP20.14■□□□□ 0.82
C9orf3-202ENST00000297979 PPRC1Q5VV67 1664 aaKnown RBP20.14■□□□□ 0.81
C9orf3-202ENST00000297979 BCORL1Q5H9F3 1711 aa20.14■□□□□ 0.81
C9orf3-202ENST00000297979 HSPA5P11021 654 aaKnown RBP20.13■□□□□ 0.81
C9orf3-202ENST00000297979 SPHKAPQ2M3C7 1700 aa20.13■□□□□ 0.81
C9orf3-202ENST00000297979 TSPOAP1O95153 1857 aa20.13■□□□□ 0.81
C9orf3-202ENST00000297979 DIP2CQ9Y2E4 1556 aa20.12■□□□□ 0.81
C9orf3-202ENST00000297979 TRPM2O94759 1503 aa20.12■□□□□ 0.81
C9orf3-202ENST00000297979 PTPRTO14522 1441 aa20.1■□□□□ 0.81
C9orf3-202ENST00000297979 ZNF326Q5BKZ1 582 aaKnown RBP20.1■□□□□ 0.81
C9orf3-202ENST00000297979 LMTK2Q8IWU2 1503 aa20.1■□□□□ 0.81
C9orf3-202ENST00000297979 RALGAPBQ86X10 1494 aa20.09■□□□□ 0.81
C9orf3-202ENST00000297979 EFCAB6Q5THR3 1501 aa20.09■□□□□ 0.81
C9orf3-202ENST00000297979 ZMYM4Q5VZL5 1548 aa20.09■□□□□ 0.81
C9orf3-202ENST00000297979 KIF13AQ9H1H9 1805 aa20.09■□□□□ 0.81
C9orf3-202ENST00000297979 DDX10Q13206 875 aaKnown RBP20.08■□□□□ 0.81
C9orf3-202ENST00000297979 DCAF11Q8TEB1 546 aa20.08■□□□□ 0.81
C9orf3-202ENST00000297979 CEP152O94986 1710 aa20.08■□□□□ 0.8
C9orf3-202ENST00000297979 SPATA31E1Q6ZUB1 1445 aa20.06■□□□□ 0.8
C9orf3-202ENST00000297979 KDM2AQ9Y2K7 1162 aa20.05■□□□□ 0.8
C9orf3-202ENST00000297979 CLTCL1P53675 1640 aa20.05■□□□□ 0.8
C9orf3-202ENST00000297979 YEATS2Q9ULM3 1422 aa20.04■□□□□ 0.8
C9orf3-202ENST00000297979 RGL3Q3MIN7 710 aa20.04■□□□□ 0.8
C9orf3-202ENST00000297979 PRAG1Q86YV5 1406 aa20.03■□□□□ 0.8
C9orf3-202ENST00000297979 GGT6Q6P531 493 aa20.01■□□□□ 0.79
C9orf3-202ENST00000297979 USP47Q96K76 1375 aa20■□□□□ 0.79
C9orf3-202ENST00000297979 TRPM1Q7Z4N2 1603 aa20■□□□□ 0.79
C9orf3-202ENST00000297979 ABCC3O15438 1527 aa20■□□□□ 0.79
C9orf3-202ENST00000297979 WASHC2AQ641Q2 1341 aa19.99■□□□□ 0.79
C9orf3-202ENST00000297979 POLR1AO95602 1720 aaPredicted RBP19.99■□□□□ 0.79
C9orf3-202ENST00000297979 NEURL4Q96JN8 1562 aa19.98■□□□□ 0.79
C9orf3-202ENST00000297979 CARD11Q9BXL7 1154 aa19.96■□□□□ 0.79
C9orf3-202ENST00000297979 CAMSAP1Q5T5Y3 1602 aa19.96■□□□□ 0.79
C9orf3-202ENST00000297979 ZC3H13Q5T200 1668 aaKnown RBP19.96■□□□□ 0.79
C9orf3-202ENST00000297979 ROCK2O75116 1388 aaKnown RBP19.95■□□□□ 0.78
C9orf3-202ENST00000297979 NPATQ14207 1427 aa19.95■□□□□ 0.78
C9orf3-202ENST00000297979 WASHC2CQ9Y4E1 1318 aa19.95■□□□□ 0.78
C9orf3-202ENST00000297979 CCDC7Q96M83 1385 aa19.95■□□□□ 0.78
C9orf3-202ENST00000297979 REREQ9P2R6 1566 aa19.94■□□□□ 0.78
C9orf3-202ENST00000297979 EIF5BO60841 1220 aaKnown RBP19.94■□□□□ 0.78
C9orf3-202ENST00000297979 UGGT1Q9NYU2 1555 aa19.94■□□□□ 0.78
C9orf3-202ENST00000297979 KIF1BO60333 1816 aa19.93■□□□□ 0.78
C9orf3-202ENST00000297979 LAMC1P11047 1609 aa19.93■□□□□ 0.78
C9orf3-202ENST00000297979 C11orf95C9JLR9 678 aaPredicted RBP19.92■□□□□ 0.78
C9orf3-202ENST00000297979 GPRASP1Q5JY77 1395 aa19.91■□□□□ 0.78
C9orf3-202ENST00000297979 MADDQ8WXG6 1647 aa19.91■□□□□ 0.78
C9orf3-202ENST00000297979 STAC3Q96MF2 364 aa19.91■□□□□ 0.78
C9orf3-202ENST00000297979 CNTLNQ9NXG0 1405 aa19.9■□□□□ 0.78
C9orf3-202ENST00000297979 COL17A1Q9UMD9 1497 aaPredicted RBP19.89■□□□□ 0.77
C9orf3-202ENST00000297979 KIF7Q2M1P5 1343 aa19.89■□□□□ 0.77
C9orf3-202ENST00000297979 AGLP35573 1532 aa19.88■□□□□ 0.77
C9orf3-202ENST00000297979 ARHGAP31Q2M1Z3 1444 aa19.88■□□□□ 0.77
C9orf3-202ENST00000297979 ANP32CO43423 234 aa19.88■□□□□ 0.77
C9orf3-202ENST00000297979 ARHGEF40Q8TER5 1519 aa19.87■□□□□ 0.77
C9orf3-202ENST00000297979 MROH2AA6NES4 1674 aa19.87■□□□□ 0.77
C9orf3-202ENST00000297979 YTHDC1Q96MU7 727 aaKnown RBP19.87■□□□□ 0.77
C9orf3-202ENST00000297979 SIGLEC1Q9BZZ2 1709 aa19.87■□□□□ 0.77
C9orf3-202ENST00000297979 CFAP65Q6ZU64 1925 aaKnown RBP19.86■□□□□ 0.77
C9orf3-202ENST00000297979 CENPBP07199 599 aaPredicted RBP19.86■□□□□ 0.77
C9orf3-202ENST00000297979 ADGRB3O60242 1522 aa19.86■□□□□ 0.77
C9orf3-202ENST00000297979 NBPF1Q3BBV0 1214 aa19.86■□□□□ 0.77
C9orf3-202ENST00000297979 NOS1P29475 1434 aa19.86■□□□□ 0.77
C9orf3-202ENST00000297979 IFT172Q9UG01 1749 aa19.85■□□□□ 0.77
C9orf3-202ENST00000297979 MYOM2P54296 1465 aa19.84■□□□□ 0.77
C9orf3-202ENST00000297979 ARID4BQ4LE39 1312 aaPredicted RBP19.84■□□□□ 0.77
C9orf3-202ENST00000297979 ST20-MTHFSA0A0A6YYL1 179 aa19.83■□□□□ 0.77
C9orf3-202ENST00000297979 SYNMO15061 1565 aa19.82■□□□□ 0.76
C9orf3-202ENST00000297979 PIK3C2BO00750 1634 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms