RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 HMMRO75330 724 aa14.34□□□□□ -0.11
USP53-201ENST00000274030 EID1Q9Y6B2 187 aa14.34□□□□□ -0.11
USP53-201ENST00000274030 KIAA2012Q0VF49 1180 aa14.33□□□□□ -0.12
USP53-201ENST00000274030 TOMM22Q9NS69 142 aa14.33□□□□□ -0.12
USP53-201ENST00000274030 GPATCH3Q96I76 525 aa14.32□□□□□ -0.12
USP53-201ENST00000274030 PDS5BQ9NTI5 1447 aa14.32□□□□□ -0.12
USP53-201ENST00000274030 CREBRFQ8IUR6 639 aa14.32□□□□□ -0.12
USP53-201ENST00000274030 IPO9Q96P70 1041 aaKnown RBP14.31□□□□□ -0.12
USP53-201ENST00000274030 SLC4A3P48751 1232 aa14.31□□□□□ -0.12
USP53-201ENST00000274030 PDE4CQ08493 712 aa14.31□□□□□ -0.12
USP53-201ENST00000274030 JPH4Q96JJ6 628 aa14.3□□□□□ -0.12
USP53-201ENST00000274030 FOXD4L6Q3SYB3 417 aaPredicted RBP14.29□□□□□ -0.12
USP53-201ENST00000274030 FOXD4L3Q6VB84 417 aaPredicted RBP14.29□□□□□ -0.12
USP53-201ENST00000274030 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.29□□□□□ -0.12
USP53-201ENST00000274030 FRAT2O75474 233 aaPredicted RBP14.29□□□□□ -0.12
USP53-201ENST00000274030 GTF2E1P29083 439 aaPredicted RBP14.29□□□□□ -0.12
USP53-201ENST00000274030 HTATSF1O43719 755 aaKnown RBP14.29□□□□□ -0.12
USP53-201ENST00000274030 TMX4Q9H1E5 349 aaPredicted RBP14.29□□□□□ -0.12
USP53-201ENST00000274030 GOLGA6L3A6NEY3 463 aa14.28□□□□□ -0.12
USP53-201ENST00000274030 RASSF8Q8NHQ8 419 aa14.28□□□□□ -0.12
USP53-201ENST00000274030 SYAP1Q96A49 352 aaPredicted RBP14.28□□□□□ -0.12
USP53-201ENST00000274030 RILPL2Q969X0 211 aa14.28□□□□□ -0.12
USP53-201ENST00000274030 NGEFQ8N5V2 710 aa14.27□□□□□ -0.13
USP53-201ENST00000274030 LMOD3Q0VAK6 560 aa14.27□□□□□ -0.13
USP53-201ENST00000274030 CHMP4AQ9BY43 222 aa14.27□□□□□ -0.13
USP53-201ENST00000274030 ANKRD45Q5TZF3 282 aa14.26□□□□□ -0.13
USP53-201ENST00000274030 G3V3G9 751 aa14.26□□□□□ -0.13
USP53-201ENST00000274030 DCAF8Q5TAQ9 597 aa14.26□□□□□ -0.13
USP53-201ENST00000274030 PDE3BQ13370 1112 aa14.26□□□□□ -0.13
USP53-201ENST00000274030 EXOC6Q8TAG9 804 aa14.25□□□□□ -0.13
USP53-201ENST00000274030 MINK1Q8N4C8 1332 aaPredicted RBP14.25□□□□□ -0.13
USP53-201ENST00000274030 MYBBP1AQ9BQG0 1328 aaKnown RBP14.25□□□□□ -0.13
USP53-201ENST00000274030 PTMSP20962 102 aa14.25□□□□□ -0.13
USP53-201ENST00000274030 NECTIN2Q92692 538 aa14.25□□□□□ -0.13
USP53-201ENST00000274030 COG6Q9Y2V7 657 aa14.25□□□□□ -0.13
USP53-201ENST00000274030 HDAC5Q9UQL6 1122 aa14.24□□□□□ -0.13
USP53-201ENST00000274030 RAPGEF2Q9Y4G8 1499 aa14.24□□□□□ -0.13
USP53-201ENST00000274030 KIF15Q9NS87 1388 aa14.24□□□□□ -0.13
USP53-201ENST00000274030 NOC3LQ8WTT2 800 aaKnown RBP14.24□□□□□ -0.13
USP53-201ENST00000274030 CCDC144AA2RUR9 1427 aa14.23□□□□□ -0.13
USP53-201ENST00000274030 APAF1O14727 1248 aa14.23□□□□□ -0.13
USP53-201ENST00000274030 ST18O60284 1047 aa14.23□□□□□ -0.13
USP53-201ENST00000274030 RSPH4AQ5TD94 716 aa14.23□□□□□ -0.13
USP53-201ENST00000274030 ANO8Q9HCE9 1232 aaPredicted RBP14.23□□□□□ -0.13
USP53-201ENST00000274030 EIF2S2P20042 333 aaKnown RBP14.22□□□□□ -0.13
USP53-201ENST00000274030 CRBNQ96SW2 442 aa14.22□□□□□ -0.13
USP53-201ENST00000274030 COG3Q96JB2 828 aa14.22□□□□□ -0.13
USP53-201ENST00000274030 KIF16BQ96L93 1317 aa14.22□□□□□ -0.13
USP53-201ENST00000274030 CCDC18Q5T9S5 1454 aa14.22□□□□□ -0.13
USP53-201ENST00000274030 TPM4P67936 248 aa14.22□□□□□ -0.13
USP53-201ENST00000274030 PRKRIP1Q9H875 184 aaPredicted RBP14.22□□□□□ -0.13
USP53-201ENST00000274030 SF3A1Q15459 793 aaKnown RBP14.21□□□□□ -0.13
USP53-201ENST00000274030 VPS53Q5VIR6 699 aa14.2□□□□□ -0.14
USP53-201ENST00000274030 PDE4AP27815 886 aa14.2□□□□□ -0.14
USP53-201ENST00000274030 DHX57Q6P158 1386 aaKnown RBP14.19□□□□□ -0.14
USP53-201ENST00000274030 ZKSCAN2Q63HK3 967 aa14.19□□□□□ -0.14
USP53-201ENST00000274030 CGNL1Q0VF96 1302 aa14.19□□□□□ -0.14
USP53-201ENST00000274030 TEFQ10587 303 aa14.19□□□□□ -0.14
USP53-201ENST00000274030 C1orf141Q5JVX7 400 aa14.19□□□□□ -0.14
USP53-201ENST00000274030 SMARCA2P51531 1590 aa14.18□□□□□ -0.14
USP53-201ENST00000274030 CYB5RLQ6IPT4 315 aa14.18□□□□□ -0.14
USP53-201ENST00000274030 CCDC34Q96HJ3 373 aa14.18□□□□□ -0.14
USP53-201ENST00000274030 PHLDB1Q86UU1 1377 aa14.18□□□□□ -0.14
USP53-201ENST00000274030 MARCH6O60337 910 aa14.18□□□□□ -0.14
USP53-201ENST00000274030 PES1O00541 588 aaKnown RBP14.17□□□□□ -0.14
USP53-201ENST00000274030 RRP1P56182 461 aaKnown RBP14.17□□□□□ -0.14
USP53-201ENST00000274030 CENPQQ7L2Z9 268 aaPredicted RBP14.17□□□□□ -0.14
USP53-201ENST00000274030 WIZO95785 1651 aa14.17□□□□□ -0.14
USP53-201ENST00000274030 H3BQV1 296 aa14.17□□□□□ -0.14
USP53-201ENST00000274030 CSPP1Q1MSJ5 1256 aa14.17□□□□□ -0.14
USP53-201ENST00000274030 IFFO2Q5TF58 517 aa14.17□□□□□ -0.14
USP53-201ENST00000274030 VGFO15240 615 aaPredicted RBP14.17□□□□□ -0.14
USP53-201ENST00000274030 EVA1CP58658 441 aa14.17□□□□□ -0.14
USP53-201ENST00000274030 EVC2Q86UK5 1308 aa14.17□□□□□ -0.14
USP53-201ENST00000274030 USP47Q96K76 1375 aa14.17□□□□□ -0.14
USP53-201ENST00000274030 E9PSI1 815 aa14.16□□□□□ -0.14
USP53-201ENST00000274030 CADPSQ9ULU8 1353 aa14.16□□□□□ -0.14
USP53-201ENST00000274030 RUSC2Q8N2Y8 1516 aa14.16□□□□□ -0.14
USP53-201ENST00000274030 FAM161AQ3B820 660 aa14.16□□□□□ -0.14
USP53-201ENST00000274030 DDX49Q9Y6V7 483 aaKnown RBP14.16□□□□□ -0.14
USP53-201ENST00000274030 FAM184AQ8NB25 1140 aa14.15□□□□□ -0.14
USP53-201ENST00000274030 C9orf78Q9NZ63 289 aaPredicted RBP14.14□□□□□ -0.15
USP53-201ENST00000274030 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.14□□□□□ -0.15
USP53-201ENST00000274030 MSH5O43196 834 aa14.14□□□□□ -0.15
USP53-201ENST00000274030 MCTP1Q6DN14 999 aa14.14□□□□□ -0.15
USP53-201ENST00000274030 SYTL4Q96C24 671 aaPredicted RBP14.14□□□□□ -0.15
USP53-201ENST00000274030 RIPK4P57078 832 aa14.13□□□□□ -0.15
USP53-201ENST00000274030 RAD21O60216 631 aa14.13□□□□□ -0.15
USP53-201ENST00000274030 DIAPH3Q9NSV4 1193 aa14.13□□□□□ -0.15
USP53-201ENST00000274030 TTC5Q8N0Z6 440 aa14.12□□□□□ -0.15
USP53-201ENST00000274030 KIF3AQ9Y496 699 aa14.12□□□□□ -0.15
USP53-201ENST00000274030 DIAPH1O60610 1272 aaKnown RBP14.12□□□□□ -0.15
USP53-201ENST00000274030 PRM3Q9NNZ6 103 aa14.12□□□□□ -0.15
USP53-201ENST00000274030 A0A0U1RQG5 324 aaPredicted RBP14.11□□□□□ -0.15
USP53-201ENST00000274030 PHF14O94880 888 aa14.11□□□□□ -0.15
USP53-201ENST00000274030 HMOX1P09601 288 aa14.11□□□□□ -0.15
USP53-201ENST00000274030 NEXNQ0ZGT2 675 aa14.11□□□□□ -0.15
USP53-201ENST00000274030 WWC1Q8IX03 1113 aa14.1□□□□□ -0.15
USP53-201ENST00000274030 PTPRGP23470 1445 aa14.1□□□□□ -0.15
USP53-201ENST00000274030 ZBED9Q6R2W3 1325 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms