RNA–Protein interactions for RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 PLEKHD1A6NEE1 506 aa36.68■■■■□ 3.46
CBX4-201ENST00000269397 ARHGEF12Q9NZN5 1544 aa36.68■■■■□ 3.46
CBX4-201ENST00000269397 ADCY10Q96PN6 1610 aa36.67■■■■□ 3.46
CBX4-201ENST00000269397 CDCA7LQ96GN5 454 aa36.67■■■■□ 3.46
CBX4-201ENST00000269397 RTL5Q5HYW3 569 aaPredicted RBP36.65■■■■□ 3.46
CBX4-201ENST00000269397 RGL3Q3MIN7 710 aa36.64■■■■□ 3.46
CBX4-201ENST00000269397 NLRP13Q86W25 1043 aa36.63■■■■□ 3.46
CBX4-201ENST00000269397 EIF4G3O43432 1585 aaKnown RBP36.63■■■■□ 3.45
CBX4-201ENST00000269397 CDC42BPAQ5VT25 1732 aa36.62■■■■□ 3.45
CBX4-201ENST00000269397 KTN1Q86UP2 1357 aaKnown RBP36.61■■■■□ 3.45
CBX4-201ENST00000269397 NBPF1Q3BBV0 1214 aa36.61■■■■□ 3.45
CBX4-201ENST00000269397 JPH4Q96JJ6 628 aa36.61■■■■□ 3.45
CBX4-201ENST00000269397 CEP170Q5SW79 1584 aa36.61■■■■□ 3.45
CBX4-201ENST00000269397 PLIN1O60240 522 aa36.59■■■■□ 3.45
CBX4-201ENST00000269397 CC2D1BQ5T0F9 858 aaKnown RBP36.58■■■■□ 3.45
CBX4-201ENST00000269397 PDE4AP27815 886 aa36.57■■■■□ 3.45
CBX4-201ENST00000269397 E9PCH4 1651 aa36.56■■■■□ 3.44
CBX4-201ENST00000269397 TCERG1O14776 1098 aaKnown RBP36.56■■■■□ 3.44
CBX4-201ENST00000269397 PARD3Q8TEW0 1356 aa36.55■■■■□ 3.44
CBX4-201ENST00000269397 SKAP1Q86WV1 359 aa36.54■■■■□ 3.44
CBX4-201ENST00000269397 CARMIL2Q6F5E8 1435 aa36.54■■■■□ 3.44
CBX4-201ENST00000269397 SHANK2Q9UPX8 1470 aa36.53■■■■□ 3.44
CBX4-201ENST00000269397 ABCC10Q5T3U5 1492 aa36.52■■■■□ 3.44
CBX4-201ENST00000269397 PER1O15534 1290 aaPredicted RBP36.52■■■■□ 3.44
CBX4-201ENST00000269397 MAGI1Q96QZ7 1491 aaPredicted RBP36.51■■■■□ 3.44
CBX4-201ENST00000269397 LAS1LQ9Y4W2 734 aaKnown RBP36.51■■■■□ 3.43
CBX4-201ENST00000269397 KDM5DQ9BY66 1539 aa36.5■■■■□ 3.43
CBX4-201ENST00000269397 ATP10BO94823 1461 aa36.48■■■■□ 3.43
CBX4-201ENST00000269397 PDE3BQ13370 1112 aa36.48■■■■□ 3.43
CBX4-201ENST00000269397 BACH2Q9BYV9 841 aa36.47■■■■□ 3.43
CBX4-201ENST00000269397 PTPRGP23470 1445 aa36.47■■■■□ 3.43
CBX4-201ENST00000269397 PRAG1Q86YV5 1406 aa36.45■■■■□ 3.43
CBX4-201ENST00000269397 GRWD1Q9BQ67 446 aaKnown RBP eCLIP36.45■■■■□ 3.438e-7■■□□□ 14.4
CBX4-201ENST00000269397 CCDC144AA2RUR9 1427 aa36.42■■■■□ 3.42
CBX4-201ENST00000269397 SYNJ2O15056 1496 aa36.42■■■■□ 3.42
CBX4-201ENST00000269397 FAM135AQ9P2D6 1515 aa36.41■■■■□ 3.42
CBX4-201ENST00000269397 PANK3Q9H999 370 aa36.41■■■■□ 3.42
CBX4-201ENST00000269397 DISP3Q9P2K9 1392 aa36.41■■■■□ 3.42
CBX4-201ENST00000269397 CRBNQ96SW2 442 aa36.41■■■■□ 3.42
CBX4-201ENST00000269397 TRPM1Q7Z4N2 1603 aa36.39■■■■□ 3.42
CBX4-201ENST00000269397 ABCA8O94911 1581 aa36.37■■■■□ 3.41
CBX4-201ENST00000269397 TESK2Q96S53 571 aa36.35■■■■□ 3.41
CBX4-201ENST00000269397 NEFMP07197 916 aa36.34■■■■□ 3.41
CBX4-201ENST00000269397 MS4A1P11836 297 aa36.34■■■■□ 3.41
CBX4-201ENST00000269397 ERCC6Q03468 1493 aa36.32■■■■□ 3.4
CBX4-201ENST00000269397 C20orf194Q5TEA3 1177 aa36.31■■■■□ 3.4
CBX4-201ENST00000269397 A2MP01023 1474 aa36.29■■■■□ 3.4
CBX4-201ENST00000269397 COL17A1Q9UMD9 1497 aaPredicted RBP36.29■■■■□ 3.4
CBX4-201ENST00000269397 PLA2R1Q13018 1463 aa36.28■■■■□ 3.4
CBX4-201ENST00000269397 NUP160Q12769 1436 aa36.28■■■■□ 3.4
CBX4-201ENST00000269397 CCDC141Q6ZP82 1450 aa36.27■■■■□ 3.4
CBX4-201ENST00000269397 ARHGEF5Q12774 1597 aa36.26■■■■□ 3.39
CBX4-201ENST00000269397 BLMP54132 1417 aaPredicted RBP36.25■■■■□ 3.39
CBX4-201ENST00000269397 ADAMTS8Q9UP79 889 aa36.24■■■■□ 3.39
CBX4-201ENST00000269397 SAMD9LQ8IVG5 1584 aa36.24■■■■□ 3.39
CBX4-201ENST00000269397 GPRASP1Q5JY77 1395 aa36.24■■■■□ 3.39
CBX4-201ENST00000269397 ERBINQ96RT1 1412 aa36.23■■■■□ 3.39
CBX4-201ENST00000269397 WASHC2CQ9Y4E1 1318 aa36.21■■■■□ 3.39
CBX4-201ENST00000269397 TMF1P82094 1093 aa36.21■■■■□ 3.39
CBX4-201ENST00000269397 IL27Q8NEV9 243 aa36.18■■■■□ 3.38
CBX4-201ENST00000269397 PRDM15P57071 1507 aaPredicted RBP36.16■■■■□ 3.38
CBX4-201ENST00000269397 CDC42BPBQ9Y5S2 1711 aa36.16■■■■□ 3.38
CBX4-201ENST00000269397 SLC4A3P48751 1232 aa36.13■■■■□ 3.37
CBX4-201ENST00000269397 SYCP2Q9BX26 1530 aa36.12■■■■□ 3.37
CBX4-201ENST00000269397 ZMYM4Q5VZL5 1548 aa36.12■■■■□ 3.37
CBX4-201ENST00000269397 RSPH4AQ5TD94 716 aa36.1■■■■□ 3.37
CBX4-201ENST00000269397 PLEKHH2Q8IVE3 1493 aa36.09■■■■□ 3.37
CBX4-201ENST00000269397 RTN4Q9NQC3 1192 aaKnown RBP36.09■■■■□ 3.37
CBX4-201ENST00000269397 PLEKHH1Q9ULM0 1364 aa36.09■■■■□ 3.37
CBX4-201ENST00000269397 USP35Q9P2H5 1018 aa36.08■■■■□ 3.37
CBX4-201ENST00000269397 PPM1GO15355 546 aaPredicted RBP36.08■■■■□ 3.37
CBX4-201ENST00000269397 MYO5CQ9NQX4 1742 aa36.08■■■■□ 3.37
CBX4-201ENST00000269397 PREX2Q70Z35 1606 aa36.06■■■■□ 3.36
CBX4-201ENST00000269397 WDR43Q15061 677 aaKnown RBP eCLIP36.06■■■■□ 3.361e-5■■□□□ 14.2
CBX4-201ENST00000269397 PPP2R1AP30153 589 aa36.05■■■■□ 3.36
CBX4-201ENST00000269397 DUSP27Q5VZP5 1158 aa36.05■■■■□ 3.36
CBX4-201ENST00000269397 KNSTRNQ9Y448 316 aa36.05■■■■□ 3.36
CBX4-201ENST00000269397 KDM2BQ8NHM5 1336 aa36.05■■■■□ 3.36
CBX4-201ENST00000269397 INSRP06213 1382 aa36.04■■■■□ 3.36
CBX4-201ENST00000269397 DDRGK1Q96HY6 314 aa36.03■■■■□ 3.36
CBX4-201ENST00000269397 MAGI2Q86UL8 1455 aa36.02■■■■□ 3.36
CBX4-201ENST00000269397 ARHGAP5Q13017 1502 aa36.02■■■■□ 3.36
CBX4-201ENST00000269397 UNC13BO14795 1591 aa36.02■■■■□ 3.36
CBX4-201ENST00000269397 LAMC1P11047 1609 aa36.01■■■■□ 3.35
CBX4-201ENST00000269397 CENPQQ7L2Z9 268 aaPredicted RBP35.96■■■■□ 3.35
CBX4-201ENST00000269397 CCDC146Q8IYE0 955 aa35.96■■■■□ 3.35
CBX4-201ENST00000269397 EIF2AK4Q9P2K8 1649 aaKnown RBP35.95■■■■□ 3.35
CBX4-201ENST00000269397 GOLGA2Q08379 1002 aa35.95■■■■□ 3.35
CBX4-201ENST00000269397 WDR7Q9Y4E6 1490 aa35.95■■■■□ 3.35
CBX4-201ENST00000269397 AMER1Q5JTC6 1135 aaPredicted RBP35.94■■■■□ 3.34
CBX4-201ENST00000269397 TTC37Q6PGP7 1564 aa35.94■■■■□ 3.34
CBX4-201ENST00000269397 RGS3P49796 1198 aa35.93■■■■□ 3.34
CBX4-201ENST00000269397 IQGAP3Q86VI3 1631 aa35.92■■■■□ 3.34
CBX4-201ENST00000269397 NFKBIBQ15653 356 aa35.9■■■■□ 3.34
CBX4-201ENST00000269397 DAXXQ9UER7 740 aaPredicted RBP35.9■■■■□ 3.34
CBX4-201ENST00000269397 ZNF521Q96K83 1311 aa35.89■■■■□ 3.34
CBX4-201ENST00000269397 C8orf34Q49A92 452 aa35.89■■■■□ 3.34
CBX4-201ENST00000269397 ANO8Q9HCE9 1232 aaPredicted RBP35.88■■■■□ 3.33
CBX4-201ENST00000269397 FAM161AQ3B820 660 aa35.87■■■■□ 3.33
CBX4-201ENST00000269397 SPINK5Q9NQ38 1064 aaPredicted RBP35.87■■■■□ 3.33
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms