RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 CDC42BPBQ9Y5S2 1711 aa17.51■□□□□ 0.39
NUP54-201ENST00000264883 NUDCQ9Y266 331 aa17.51■□□□□ 0.39
NUP54-201ENST00000264883 KIF7Q2M1P5 1343 aa17.5■□□□□ 0.39
NUP54-201ENST00000264883 RSPH6AQ9H0K4 717 aa17.5■□□□□ 0.39
NUP54-201ENST00000264883 CROCC2H7BZ55 1655 aa17.48■□□□□ 0.39
NUP54-201ENST00000264883 TCERG1O14776 1098 aaKnown RBP17.47■□□□□ 0.39
NUP54-201ENST00000264883 MBD5Q9P267 1494 aa17.47■□□□□ 0.39
NUP54-201ENST00000264883 PDE4AP27815 886 aa17.46■□□□□ 0.39
NUP54-201ENST00000264883 NBPF8Q3BBV2 869 aa17.46■□□□□ 0.39
NUP54-201ENST00000264883 MYO5CQ9NQX4 1742 aa17.46■□□□□ 0.38
NUP54-201ENST00000264883 ADGBQ8N7X0 1667 aa17.45■□□□□ 0.38
NUP54-201ENST00000264883 SAMD9LQ8IVG5 1584 aa17.45■□□□□ 0.38
NUP54-201ENST00000264883 ROCK2O75116 1388 aaKnown RBP17.44■□□□□ 0.38
NUP54-201ENST00000264883 WDR7Q9Y4E6 1490 aa17.44■□□□□ 0.38
NUP54-201ENST00000264883 ZNF777Q9ULD5 760 aaPredicted RBP17.44■□□□□ 0.38
NUP54-201ENST00000264883 ARHGEF5Q12774 1597 aa17.44■□□□□ 0.38
NUP54-201ENST00000264883 ADGRL2O95490 1459 aa17.43■□□□□ 0.38
NUP54-201ENST00000264883 CYB5RLQ6IPT4 315 aa17.43■□□□□ 0.38
NUP54-201ENST00000264883 BACH2Q9BYV9 841 aa17.42■□□□□ 0.38
NUP54-201ENST00000264883 SHANK2Q9UPX8 1470 aa17.42■□□□□ 0.38
NUP54-201ENST00000264883 DHX29Q7Z478 1369 aaKnown RBP17.42■□□□□ 0.38
NUP54-201ENST00000264883 FRAT1Q92837 279 aaPredicted RBP17.42■□□□□ 0.38
NUP54-201ENST00000264883 SLC4A1APQ9BWU0 796 aaKnown RBP17.42■□□□□ 0.38
NUP54-201ENST00000264883 PZPP20742 1482 aa17.41■□□□□ 0.38
NUP54-201ENST00000264883 PLCH2O75038 1416 aa17.4■□□□□ 0.38
NUP54-201ENST00000264883 FAM43AQ8N2R8 423 aa17.4■□□□□ 0.38
NUP54-201ENST00000264883 ARHGAP5Q13017 1502 aa17.4■□□□□ 0.38
NUP54-201ENST00000264883 NPM1P06748 294 aaKnown RBP eCLIP17.39■□□□□ 0.38
NUP54-201ENST00000264883 NFKBIBQ15653 356 aa17.39■□□□□ 0.38
NUP54-201ENST00000264883 DDRGK1Q96HY6 314 aa17.39■□□□□ 0.38
NUP54-201ENST00000264883 KTN1Q86UP2 1357 aaKnown RBP17.39■□□□□ 0.37
NUP54-201ENST00000264883 KIAA1107Q9UPP5 1409 aa17.39■□□□□ 0.37
NUP54-201ENST00000264883 KDM5CP41229 1560 aa17.38■□□□□ 0.37
NUP54-201ENST00000264883 ARAP3Q8WWN8 1544 aa17.38■□□□□ 0.37
NUP54-201ENST00000264883 ASXL2Q76L83 1435 aa17.38■□□□□ 0.37
NUP54-201ENST00000264883 MS4A1P11836 297 aa17.38■□□□□ 0.37
NUP54-201ENST00000264883 FOXD1Q16676 465 aa17.38■□□□□ 0.37
NUP54-201ENST00000264883 DNAJC5Q9H3Z4 198 aa17.37■□□□□ 0.37
NUP54-201ENST00000264883 UHRF1BP1Q6BDS2 1440 aa17.37■□□□□ 0.37
NUP54-201ENST00000264883 ABCA9Q8IUA7 1624 aa17.37■□□□□ 0.37
NUP54-201ENST00000264883 USP47Q96K76 1375 aa17.36■□□□□ 0.37
NUP54-201ENST00000264883 CCDC141Q6ZP82 1450 aa17.36■□□□□ 0.37
NUP54-201ENST00000264883 C9orf84Q5VXU9 1444 aa17.35■□□□□ 0.37
NUP54-201ENST00000264883 SYCP2Q9BX26 1530 aa17.35■□□□□ 0.37
NUP54-201ENST00000264883 ARHGEF12Q9NZN5 1544 aa17.35■□□□□ 0.37
NUP54-201ENST00000264883 PLEKHH2Q8IVE3 1493 aa17.35■□□□□ 0.37
NUP54-201ENST00000264883 GLIPR1L2Q4G1C9 344 aa17.35■□□□□ 0.37
NUP54-201ENST00000264883 BCORL1Q5H9F3 1711 aa17.34■□□□□ 0.37
NUP54-201ENST00000264883 RALGAPBQ86X10 1494 aa17.34■□□□□ 0.37
NUP54-201ENST00000264883 HNRNPMP52272 730 aaKnown RBP eCLIP17.34■□□□□ 0.371e-7■■■■□ 25.9
NUP54-201ENST00000264883 RSPH4AQ5TD94 716 aa17.33■□□□□ 0.37
NUP54-201ENST00000264883 ANKRD30AQ9BXX3 1397 aa17.33■□□□□ 0.37
NUP54-201ENST00000264883 MAST1Q9Y2H9 1570 aa17.32■□□□□ 0.36
NUP54-201ENST00000264883 ABCC1P33527 1531 aa17.31■□□□□ 0.36
NUP54-201ENST00000264883 KIF15Q9NS87 1388 aa17.31■□□□□ 0.36
NUP54-201ENST00000264883 EXOC6Q8TAG9 804 aa17.31■□□□□ 0.36
NUP54-201ENST00000264883 EFCAB2Q5VUJ9 269 aa17.3■□□□□ 0.36
NUP54-201ENST00000264883 TSPY4P0CV99 314 aa17.29■□□□□ 0.36
NUP54-201ENST00000264883 TSPY10P0CW01 314 aa17.29■□□□□ 0.36
NUP54-201ENST00000264883 BRD4O60885 1362 aaPredicted RBP17.29■□□□□ 0.36
NUP54-201ENST00000264883 RRP1P56182 461 aaKnown RBP17.29■□□□□ 0.36
NUP54-201ENST00000264883 LRPPRCP42704 1394 aaKnown RBP17.28■□□□□ 0.36
NUP54-201ENST00000264883 KDM5DQ9BY66 1539 aa17.28■□□□□ 0.36
NUP54-201ENST00000264883 PNISRQ8TF01 805 aaKnown RBP17.28■□□□□ 0.36
NUP54-201ENST00000264883 ANKRD50Q9ULJ7 1429 aa17.27■□□□□ 0.35
NUP54-201ENST00000264883 DAXXQ9UER7 740 aaPredicted RBP17.26■□□□□ 0.35
NUP54-201ENST00000264883 RALBP1Q15311 655 aa17.26■□□□□ 0.35
NUP54-201ENST00000264883 SENP3-EIF4A1A0A087X0R7 540 aa17.25■□□□□ 0.35
NUP54-201ENST00000264883 E9PCH4 1651 aa17.25■□□□□ 0.35
NUP54-201ENST00000264883 TMC1Q8TDI8 760 aa17.25■□□□□ 0.35
NUP54-201ENST00000264883 DCAF11Q8TEB1 546 aa17.25■□□□□ 0.35
NUP54-201ENST00000264883 PLXNC1O60486 1568 aa17.24■□□□□ 0.35
NUP54-201ENST00000264883 FANCAO15360 1455 aa17.24■□□□□ 0.35
NUP54-201ENST00000264883 SLC4A3P48751 1232 aa17.24■□□□□ 0.35
NUP54-201ENST00000264883 MYBBP1AQ9BQG0 1328 aaKnown RBP17.23■□□□□ 0.35
NUP54-201ENST00000264883 TRAPPC8Q9Y2L5 1435 aa17.22■□□□□ 0.35
NUP54-201ENST00000264883 INSRP06213 1382 aa17.21■□□□□ 0.35
NUP54-201ENST00000264883 PDE3BQ13370 1112 aa17.21■□□□□ 0.35
NUP54-201ENST00000264883 PKD2Q13563 968 aa17.21■□□□□ 0.35
NUP54-201ENST00000264883 CNGB1Q14028 1251 aaPredicted RBP17.21■□□□□ 0.35
NUP54-201ENST00000264883 VSIG10Q8N0Z9 540 aa17.21■□□□□ 0.35
NUP54-201ENST00000264883 ZMYND15Q9H091 742 aa17.21■□□□□ 0.35
NUP54-201ENST00000264883 ZMYM4Q5VZL5 1548 aa17.21■□□□□ 0.35
NUP54-201ENST00000264883 FRAT2O75474 233 aaPredicted RBP17.19■□□□□ 0.34
NUP54-201ENST00000264883 RCAN3Q9UKA8 241 aa17.18■□□□□ 0.34
NUP54-201ENST00000264883 GLI2P10070 1586 aa17.17■□□□□ 0.34
NUP54-201ENST00000264883 CARD11Q9BXL7 1154 aa17.17■□□□□ 0.34
NUP54-201ENST00000264883 CD109Q6YHK3 1445 aa17.17■□□□□ 0.34
NUP54-201ENST00000264883 ADGRL1O94910 1474 aa17.17■□□□□ 0.34
NUP54-201ENST00000264883 RTEL1-TNFRSF6BF6WH68 1400 aa17.16■□□□□ 0.34
NUP54-201ENST00000264883 ZFYVE16Q7Z3T8 1539 aa17.16■□□□□ 0.34
NUP54-201ENST00000264883 DUOX2Q9NRD8 1548 aa17.15■□□□□ 0.34
NUP54-201ENST00000264883 CFAP74Q9C0B2 1584 aa17.15■□□□□ 0.34
NUP54-201ENST00000264883 POLR3GLQ9BT43 218 aa17.15■□□□□ 0.34
NUP54-201ENST00000264883 RRAGDQ9NQL2 400 aaPredicted RBP17.15■□□□□ 0.34
NUP54-201ENST00000264883 DIP2BQ9P265 1576 aa17.14■□□□□ 0.34
NUP54-201ENST00000264883 ZNF326Q5BKZ1 582 aaKnown RBP17.14■□□□□ 0.33
NUP54-201ENST00000264883 INO80Q9ULG1 1556 aaPredicted RBP17.14■□□□□ 0.33
NUP54-201ENST00000264883 SCAPERQ9BY12 1400 aa17.14■□□□□ 0.33
NUP54-201ENST00000264883 UNC13BO14795 1591 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms