RNA–Protein interactions for RNA: ENST00000257181.9

PRPF38A-201, Transcript of pre-mRNA processing factor 38A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRPF38A, Length 5,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38A-201ENST00000257181 RAB3GAP2Q9H2M9 1393 aa17.33■□□□□ 0.36
PRPF38A-201ENST00000257181 LRRC9Q6ZRR7 1453 aa17.32■□□□□ 0.36
PRPF38A-201ENST00000257181 IPO8O15397 1037 aaKnown RBP17.31■□□□□ 0.36
PRPF38A-201ENST00000257181 SAFB2Q14151 953 aaKnown RBP eCLIP17.3■□□□□ 0.36
PRPF38A-201ENST00000257181 PROSER2Q86WR7 435 aaPredicted RBP17.3■□□□□ 0.36
PRPF38A-201ENST00000257181 BIVM-ERCC5R4GMW8 1640 aa17.3■□□□□ 0.36
PRPF38A-201ENST00000257181 EPRSP07814 1512 aaKnown RBP17.3■□□□□ 0.36
PRPF38A-201ENST00000257181 TXNDC2Q86VQ3 553 aa17.29■□□□□ 0.36
PRPF38A-201ENST00000257181 ANP32AP39687 249 aaKnown RBP17.28■□□□□ 0.36
PRPF38A-201ENST00000257181 C1orf141Q5JVX7 400 aa17.28■□□□□ 0.36
PRPF38A-201ENST00000257181 BCL11AQ9H165 835 aa17.28■□□□□ 0.36
PRPF38A-201ENST00000257181 SUPT6HQ7KZ85 1726 aaKnown RBP17.27■□□□□ 0.35
PRPF38A-201ENST00000257181 DAPK1P53355 1430 aa17.26■□□□□ 0.35
PRPF38A-201ENST00000257181 OS9Q13438 667 aaPredicted RBP17.26■□□□□ 0.35
PRPF38A-201ENST00000257181 C9orf84Q5VXU9 1444 aa17.26■□□□□ 0.35
PRPF38A-201ENST00000257181 ADGRL1O94910 1474 aa17.25■□□□□ 0.35
PRPF38A-201ENST00000257181 WWC1Q8IX03 1113 aa17.25■□□□□ 0.35
PRPF38A-201ENST00000257181 NGEFQ8N5V2 710 aa17.25■□□□□ 0.35
PRPF38A-201ENST00000257181 STK31Q9BXU1 1019 aa17.25■□□□□ 0.35
PRPF38A-201ENST00000257181 CCDC141Q6ZP82 1450 aa17.24■□□□□ 0.35
PRPF38A-201ENST00000257181 HSP90B1P14625 803 aaKnown RBP17.24■□□□□ 0.35
PRPF38A-201ENST00000257181 LAS1LQ9Y4W2 734 aaKnown RBP17.24■□□□□ 0.35
PRPF38A-201ENST00000257181 ROCK1Q13464 1354 aa17.22■□□□□ 0.35
PRPF38A-201ENST00000257181 LRPPRCP42704 1394 aaKnown RBP17.22■□□□□ 0.35
PRPF38A-201ENST00000257181 G3V3G9 751 aa17.22■□□□□ 0.35
PRPF38A-201ENST00000257181 DCAF8Q5TAQ9 597 aa17.22■□□□□ 0.35
PRPF38A-201ENST00000257181 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.21■□□□□ 0.35
PRPF38A-201ENST00000257181 CDK11BP21127 795 aaKnown RBP17.21■□□□□ 0.35
PRPF38A-201ENST00000257181 ANKRD30BQ9BXX2 1392 aa17.21■□□□□ 0.35
PRPF38A-201ENST00000257181 RUSC2Q8N2Y8 1516 aa17.21■□□□□ 0.34
PRPF38A-201ENST00000257181 ANP32BQ92688 251 aaKnown RBP17.2■□□□□ 0.34
PRPF38A-201ENST00000257181 THOC2Q8NI27 1593 aaKnown RBP17.2■□□□□ 0.34
PRPF38A-201ENST00000257181 SMG6Q86US8 1419 aaKnown RBP17.19■□□□□ 0.34
PRPF38A-201ENST00000257181 CC2D1BQ5T0F9 858 aaKnown RBP17.18■□□□□ 0.34
PRPF38A-201ENST00000257181 FANCAO15360 1455 aa17.18■□□□□ 0.34
PRPF38A-201ENST00000257181 SOX12O15370 315 aa17.18■□□□□ 0.34
PRPF38A-201ENST00000257181 CENPJQ9HC77 1338 aaPredicted RBP17.17■□□□□ 0.34
PRPF38A-201ENST00000257181 CNTLNQ9NXG0 1405 aa17.17■□□□□ 0.34
PRPF38A-201ENST00000257181 TRAK1Q9UPV9 953 aa17.17■□□□□ 0.34
PRPF38A-201ENST00000257181 SIN3AQ96ST3 1273 aa17.16■□□□□ 0.34
PRPF38A-201ENST00000257181 ZNF692Q9BU19 519 aaPredicted RBP17.16■□□□□ 0.34
PRPF38A-201ENST00000257181 CCDC136Q96JN2 1154 aa17.16■□□□□ 0.34
PRPF38A-201ENST00000257181 TTC5Q8N0Z6 440 aa17.15■□□□□ 0.34
PRPF38A-201ENST00000257181 MAP3K1Q13233 1512 aa17.15■□□□□ 0.34
PRPF38A-201ENST00000257181 AFAP1Q8N556 730 aa17.15■□□□□ 0.34
PRPF38A-201ENST00000257181 TNNT2P45379 298 aaPredicted RBP17.15■□□□□ 0.34
PRPF38A-201ENST00000257181 GTF2E1P29083 439 aaPredicted RBP17.14■□□□□ 0.33
PRPF38A-201ENST00000257181 SALL2Q9Y467 1007 aaPredicted RBP17.14■□□□□ 0.33
PRPF38A-201ENST00000257181 U2AF1L5P0DN76 240 aaPredicted RBP17.13■□□□□ 0.33
PRPF38A-201ENST00000257181 U2AF1Q01081 240 aaKnown RBP eCLIP17.13■□□□□ 0.332e-6■□□□□ 9.7
PRPF38A-201ENST00000257181 HSPA5P11021 654 aaKnown RBP17.13■□□□□ 0.33
PRPF38A-201ENST00000257181 RAPGEF4Q8WZA2 1011 aa17.12■□□□□ 0.33
PRPF38A-201ENST00000257181 GPATCH3Q96I76 525 aa17.12■□□□□ 0.33
PRPF38A-201ENST00000257181 CCER2I3L3R5 266 aa17.12■□□□□ 0.33
PRPF38A-201ENST00000257181 WDR7Q9Y4E6 1490 aa17.12■□□□□ 0.33
PRPF38A-201ENST00000257181 ADAMTS12P58397 1594 aa17.11■□□□□ 0.33
PRPF38A-201ENST00000257181 ZNF608Q9ULD9 1512 aaPredicted RBP17.11■□□□□ 0.33
PRPF38A-201ENST00000257181 TAF7LQ5H9L4 462 aa17.1■□□□□ 0.33
PRPF38A-201ENST00000257181 NCLP19338 710 aaKnown RBP17.08■□□□□ 0.33
PRPF38A-201ENST00000257181 HMMRO75330 724 aa17.08■□□□□ 0.32
PRPF38A-201ENST00000257181 ASXL2Q76L83 1435 aa17.08■□□□□ 0.32
PRPF38A-201ENST00000257181 TEFQ10587 303 aa17.08■□□□□ 0.32
PRPF38A-201ENST00000257181 BECN1Q14457 450 aa17.07■□□□□ 0.32
PRPF38A-201ENST00000257181 TOM1O60784 492 aa17.07■□□□□ 0.32
PRPF38A-201ENST00000257181 NLRP13Q86W25 1043 aa17.07■□□□□ 0.32
PRPF38A-201ENST00000257181 L3MBTL2Q969R5 705 aa17.07■□□□□ 0.32
PRPF38A-201ENST00000257181 ZNF518AQ6AHZ1 1483 aa17.06■□□□□ 0.32
PRPF38A-201ENST00000257181 MCCP23508 829 aa17.06■□□□□ 0.32
PRPF38A-201ENST00000257181 LRRFIP1Q32MZ4 808 aaKnown RBP17.06■□□□□ 0.32
PRPF38A-201ENST00000257181 NUTM2DQ5VT03 806 aaPredicted RBP17.06■□□□□ 0.32
PRPF38A-201ENST00000257181 NEUROD2Q15784 382 aa17.06■□□□□ 0.32
PRPF38A-201ENST00000257181 TIAM1Q13009 1591 aa17.06■□□□□ 0.32
PRPF38A-201ENST00000257181 FAM135AQ9P2D6 1515 aa17.05■□□□□ 0.32
PRPF38A-201ENST00000257181 MINK1Q8N4C8 1332 aaPredicted RBP17.05■□□□□ 0.32
PRPF38A-201ENST00000257181 UGGT2Q9NYU1 1516 aa17.05■□□□□ 0.32
PRPF38A-201ENST00000257181 CFAP74Q9C0B2 1584 aa17.04■□□□□ 0.32
PRPF38A-201ENST00000257181 RAPGEF3O95398 923 aa17.04■□□□□ 0.32
PRPF38A-201ENST00000257181 DDX58O95786 925 aaKnown RBP17.04■□□□□ 0.32
PRPF38A-201ENST00000257181 HSP90AB1P08238 724 aaKnown RBP17.04■□□□□ 0.32
PRPF38A-201ENST00000257181 CHMP4CQ96CF2 233 aa17.04■□□□□ 0.32
PRPF38A-201ENST00000257181 EIF4G3O43432 1585 aaKnown RBP17.03■□□□□ 0.32
PRPF38A-201ENST00000257181 ANP32EQ9BTT0 268 aa17.02■□□□□ 0.32
PRPF38A-201ENST00000257181 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.02■□□□□ 0.32
PRPF38A-201ENST00000257181 RAPGEF6Q8TEU7 1601 aa17.02■□□□□ 0.32
PRPF38A-201ENST00000257181 ATAD2Q6PL18 1390 aa17.02■□□□□ 0.32
PRPF38A-201ENST00000257181 MSH5O43196 834 aa17.02■□□□□ 0.31
PRPF38A-201ENST00000257181 PLCH2O75038 1416 aa17.02■□□□□ 0.31
PRPF38A-201ENST00000257181 NEXNQ0ZGT2 675 aa17.01■□□□□ 0.31
PRPF38A-201ENST00000257181 PDE3BQ13370 1112 aa17.01■□□□□ 0.31
PRPF38A-201ENST00000257181 ESCO1Q5FWF5 840 aa17.01■□□□□ 0.31
PRPF38A-201ENST00000257181 ABCC2Q92887 1545 aa17.01■□□□□ 0.31
PRPF38A-201ENST00000257181 KIAA1107Q9UPP5 1409 aa17.01■□□□□ 0.31
PRPF38A-201ENST00000257181 DDRGK1Q96HY6 314 aa17.01■□□□□ 0.31
PRPF38A-201ENST00000257181 KIF21AQ7Z4S6 1674 aa17■□□□□ 0.31
PRPF38A-201ENST00000257181 KCNH5Q8NCM2 988 aa17■□□□□ 0.31
PRPF38A-201ENST00000257181 TNRQ92752 1358 aa17■□□□□ 0.31
PRPF38A-201ENST00000257181 GORABQ5T7V8 394 aa16.99■□□□□ 0.31
PRPF38A-201ENST00000257181 NUP160Q12769 1436 aa16.99■□□□□ 0.31
PRPF38A-201ENST00000257181 DHX29Q7Z478 1369 aaKnown RBP16.99■□□□□ 0.31
PRPF38A-201ENST00000257181 ITSN2Q9NZM3 1697 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms