RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 RPRD2Q5VT52 1461 aaKnown RBP18.85■□□□□ 0.61
SDC1-201ENST00000254351 EPRSP07814 1512 aaKnown RBP18.85■□□□□ 0.61
SDC1-201ENST00000254351 MYBBP1AQ9BQG0 1328 aaKnown RBP18.85■□□□□ 0.61
SDC1-201ENST00000254351 NUP153P49790 1475 aaKnown RBP18.84■□□□□ 0.61
SDC1-201ENST00000254351 MAGI3Q5TCQ9 1506 aa18.84■□□□□ 0.61
SDC1-201ENST00000254351 SLKQ9H2G2 1235 aaPredicted RBP18.84■□□□□ 0.61
SDC1-201ENST00000254351 ABCA8O94911 1581 aa18.83■□□□□ 0.6
SDC1-201ENST00000254351 TEX14Q8IWB6 1497 aa18.83■□□□□ 0.6
SDC1-201ENST00000254351 RGL3Q3MIN7 710 aa18.83■□□□□ 0.6
SDC1-201ENST00000254351 POGKQ9P215 609 aa18.8■□□□□ 0.6
SDC1-201ENST00000254351 KIF15Q9NS87 1388 aa18.8■□□□□ 0.6
SDC1-201ENST00000254351 SPRYD3Q8NCJ5 442 aa18.8■□□□□ 0.6
SDC1-201ENST00000254351 CDK13Q14004 1512 aaKnown RBP18.8■□□□□ 0.6
SDC1-201ENST00000254351 SUPT6HQ7KZ85 1726 aaKnown RBP18.79■□□□□ 0.6
SDC1-201ENST00000254351 BCORL1Q5H9F3 1711 aa18.78■□□□□ 0.6
SDC1-201ENST00000254351 NLRP13Q86W25 1043 aa18.76■□□□□ 0.59
SDC1-201ENST00000254351 EHBP1L1Q8N3D4 1523 aa18.76■□□□□ 0.59
SDC1-201ENST00000254351 RALBP1Q15311 655 aa18.75■□□□□ 0.59
SDC1-201ENST00000254351 GZF1Q9H116 711 aaPredicted RBP18.74■□□□□ 0.59
SDC1-201ENST00000254351 FAM161AQ3B820 660 aa18.74■□□□□ 0.59
SDC1-201ENST00000254351 C8orf34Q49A92 452 aa18.74■□□□□ 0.59
SDC1-201ENST00000254351 LRPPRCP42704 1394 aaKnown RBP18.73■□□□□ 0.59
SDC1-201ENST00000254351 BRD4O60885 1362 aaPredicted RBP18.73■□□□□ 0.59
SDC1-201ENST00000254351 ARID4BQ4LE39 1312 aaPredicted RBP18.73■□□□□ 0.59
SDC1-201ENST00000254351 MIA2Q96PC5 1412 aa18.72■□□□□ 0.59
SDC1-201ENST00000254351 KTN1Q86UP2 1357 aaKnown RBP18.7■□□□□ 0.58
SDC1-201ENST00000254351 ABCC2Q92887 1545 aa18.7■□□□□ 0.58
SDC1-201ENST00000254351 ADAMTS8Q9UP79 889 aa18.7■□□□□ 0.58
SDC1-201ENST00000254351 CFDP1Q9UEE9 299 aaPredicted RBP18.7■□□□□ 0.58
SDC1-201ENST00000254351 ATP10BO94823 1461 aa18.7■□□□□ 0.58
SDC1-201ENST00000254351 NBPF1Q3BBV0 1214 aa18.69■□□□□ 0.58
SDC1-201ENST00000254351 DAPK1P53355 1430 aa18.69■□□□□ 0.58
SDC1-201ENST00000254351 PDE3BQ13370 1112 aa18.69■□□□□ 0.58
SDC1-201ENST00000254351 CCDC146Q8IYE0 955 aa18.69■□□□□ 0.58
SDC1-201ENST00000254351 RRAGDQ9NQL2 400 aaPredicted RBP18.69■□□□□ 0.58
SDC1-201ENST00000254351 ABCC5O15440 1437 aa18.68■□□□□ 0.58
SDC1-201ENST00000254351 UHRF1BP1LA0JNW5 1464 aa18.67■□□□□ 0.58
SDC1-201ENST00000254351 SEC24BO95487 1268 aa18.67■□□□□ 0.58
SDC1-201ENST00000254351 PANK3Q9H999 370 aa18.67■□□□□ 0.58
SDC1-201ENST00000254351 ROCK2O75116 1388 aaKnown RBP18.67■□□□□ 0.58
SDC1-201ENST00000254351 NAP1L5Q96NT1 182 aaPredicted RBP18.67■□□□□ 0.58
SDC1-201ENST00000254351 RSPH6AQ9H0K4 717 aa18.67■□□□□ 0.58
SDC1-201ENST00000254351 ARHGEF11O15085 1522 aa18.66■□□□□ 0.58
SDC1-201ENST00000254351 CENPQQ7L2Z9 268 aaPredicted RBP18.65■□□□□ 0.58
SDC1-201ENST00000254351 TROQ12816 1431 aaPredicted RBP18.65■□□□□ 0.58
SDC1-201ENST00000254351 FAM43AQ8N2R8 423 aa18.65■□□□□ 0.58
SDC1-201ENST00000254351 GCC2Q8IWJ2 1684 aa18.64■□□□□ 0.58
SDC1-201ENST00000254351 NUP155O75694 1391 aa18.64■□□□□ 0.57
SDC1-201ENST00000254351 BCAR3O75815 825 aa18.63■□□□□ 0.57
SDC1-201ENST00000254351 KDM2BQ8NHM5 1336 aa18.63■□□□□ 0.57
SDC1-201ENST00000254351 TCOF1Q13428 1488 aaKnown RBP18.62■□□□□ 0.57
SDC1-201ENST00000254351 VSIG10Q8N0Z9 540 aa18.62■□□□□ 0.57
SDC1-201ENST00000254351 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.61■□□□□ 0.57
SDC1-201ENST00000254351 WDR43Q15061 677 aaKnown RBP eCLIP18.6■□□□□ 0.57
SDC1-201ENST00000254351 PLEKHD1A6NEE1 506 aa18.6■□□□□ 0.57
SDC1-201ENST00000254351 PZPP20742 1482 aa18.59■□□□□ 0.57
SDC1-201ENST00000254351 IGHDP01880 384 aa18.58■□□□□ 0.57
SDC1-201ENST00000254351 PANK2Q9BZ23 570 aa18.58■□□□□ 0.57
SDC1-201ENST00000254351 ADCY10Q96PN6 1610 aa18.58■□□□□ 0.57
SDC1-201ENST00000254351 CANXP27824 592 aaKnown RBP18.58■□□□□ 0.56
SDC1-201ENST00000254351 KIAA1107Q9UPP5 1409 aa18.58■□□□□ 0.56
SDC1-201ENST00000254351 PER1O15534 1290 aaPredicted RBP18.57■□□□□ 0.56
SDC1-201ENST00000254351 PKNOX2Q96KN3 472 aa18.57■□□□□ 0.56
SDC1-201ENST00000254351 ZCCHC11Q5TAX3 1644 aaKnown RBP18.56■□□□□ 0.56
SDC1-201ENST00000254351 SPINK5Q9NQ38 1064 aaPredicted RBP18.56■□□□□ 0.56
SDC1-201ENST00000254351 DUSP27Q5VZP5 1158 aa18.56■□□□□ 0.56
SDC1-201ENST00000254351 NEUROD2Q15784 382 aa18.55■□□□□ 0.56
SDC1-201ENST00000254351 KDM5CP41229 1560 aa18.55■□□□□ 0.56
SDC1-201ENST00000254351 KIF14Q15058 1648 aa18.54■□□□□ 0.56
SDC1-201ENST00000254351 PLEKHH1Q9ULM0 1364 aa18.54■□□□□ 0.56
SDC1-201ENST00000254351 GOLGA2Q08379 1002 aa18.54■□□□□ 0.56
SDC1-201ENST00000254351 COG6Q9Y2V7 657 aa18.54■□□□□ 0.56
SDC1-201ENST00000254351 PANK1Q8TE04 598 aa18.53■□□□□ 0.56
SDC1-201ENST00000254351 PARD3Q8TEW0 1356 aa18.53■□□□□ 0.56
SDC1-201ENST00000254351 ROCK1Q13464 1354 aa18.52■□□□□ 0.55
SDC1-201ENST00000254351 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.52■□□□□ 0.55
SDC1-201ENST00000254351 APAF1O14727 1248 aa18.51■□□□□ 0.55
SDC1-201ENST00000254351 DISP3Q9P2K9 1392 aa18.5■□□□□ 0.55
SDC1-201ENST00000254351 RIMBP3CA6NJZ7 1639 aa18.5■□□□□ 0.55
SDC1-201ENST00000254351 RIMBP3BA6NNM3 1639 aa18.5■□□□□ 0.55
SDC1-201ENST00000254351 RIMBP3Q9UFD9 1639 aa18.5■□□□□ 0.55
SDC1-201ENST00000254351 BCL2L13Q9BXK5 485 aa18.49■□□□□ 0.55
SDC1-201ENST00000254351 PNNQ9H307 717 aaKnown RBP18.49■□□□□ 0.55
SDC1-201ENST00000254351 POLR1AO95602 1720 aaPredicted RBP18.49■□□□□ 0.55
SDC1-201ENST00000254351 ABCC10Q5T3U5 1492 aa18.49■□□□□ 0.55
SDC1-201ENST00000254351 MBD5Q9P267 1494 aa18.49■□□□□ 0.55
SDC1-201ENST00000254351 BECN1Q14457 450 aa18.48■□□□□ 0.55
SDC1-201ENST00000254351 XRCC6P12956 609 aaKnown RBP eCLIP18.48■□□□□ 0.55
SDC1-201ENST00000254351 DMRT2Q9Y5R5 561 aa18.48■□□□□ 0.55
SDC1-201ENST00000254351 USP19O94966 1318 aa18.48■□□□□ 0.55
SDC1-201ENST00000254351 HNRNPMP52272 730 aaKnown RBP eCLIP18.47■□□□□ 0.55
SDC1-201ENST00000254351 CLUAP1Q96AJ1 413 aa18.47■□□□□ 0.55
SDC1-201ENST00000254351 ITSN2Q9NZM3 1697 aa18.47■□□□□ 0.55
SDC1-201ENST00000254351 ZMYND15Q9H091 742 aa18.47■□□□□ 0.55
SDC1-201ENST00000254351 KNSTRNQ9Y448 316 aa18.47■□□□□ 0.55
SDC1-201ENST00000254351 GPATCH8Q9UKJ3 1502 aaKnown RBP18.46■□□□□ 0.55
SDC1-201ENST00000254351 ANKRD50Q9ULJ7 1429 aa18.46■□□□□ 0.55
SDC1-201ENST00000254351 GOLGA6L3A6NEY3 463 aa18.45■□□□□ 0.54
SDC1-201ENST00000254351 TSPY4P0CV99 314 aa18.44■□□□□ 0.54
SDC1-201ENST00000254351 TSPY10P0CW01 314 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms