RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 C1orf141Q5JVX7 400 aa23.73■■□□□ 1.39
SMPD3-201ENST00000219334 CCDC146Q8IYE0 955 aa23.73■■□□□ 1.39
SMPD3-201ENST00000219334 CCDC144AA2RUR9 1427 aa23.72■■□□□ 1.39
SMPD3-201ENST00000219334 CCDC34Q96HJ3 373 aa23.71■■□□□ 1.39
SMPD3-201ENST00000219334 KIAA2012Q0VF49 1180 aa23.7■■□□□ 1.38
SMPD3-201ENST00000219334 HSP90B1P14625 803 aaKnown RBP23.7■■□□□ 1.38
SMPD3-201ENST00000219334 NAP1L5Q96NT1 182 aaPredicted RBP23.69■■□□□ 1.38
SMPD3-201ENST00000219334 CLUAP1Q96AJ1 413 aa23.69■■□□□ 1.38
SMPD3-201ENST00000219334 TOMM22Q9NS69 142 aa23.69■■□□□ 1.38
SMPD3-201ENST00000219334 TOP2AP11388 1531 aaKnown RBP23.69■■□□□ 1.38
SMPD3-201ENST00000219334 CENPJQ9HC77 1338 aaPredicted RBP23.68■■□□□ 1.38
SMPD3-201ENST00000219334 MSH5O43196 834 aa23.68■■□□□ 1.38
SMPD3-201ENST00000219334 EVC2Q86UK5 1308 aa23.68■■□□□ 1.38
SMPD3-201ENST00000219334 GBP4Q96PP9 640 aa23.67■■□□□ 1.38
SMPD3-201ENST00000219334 TEFQ10587 303 aa23.66■■□□□ 1.38
SMPD3-201ENST00000219334 PTMSP20962 102 aa23.63■■□□□ 1.37
SMPD3-201ENST00000219334 PHLDB1Q86UU1 1377 aa23.63■■□□□ 1.37
SMPD3-201ENST00000219334 RASSF8Q8NHQ8 419 aa23.63■■□□□ 1.37
SMPD3-201ENST00000219334 CGNL1Q0VF96 1302 aa23.63■■□□□ 1.37
SMPD3-201ENST00000219334 FAM69CQ0P6D2 419 aa23.63■■□□□ 1.37
SMPD3-201ENST00000219334 MEX3CQ5U5Q3 659 aaKnown RBP23.63■■□□□ 1.37
SMPD3-201ENST00000219334 TTC5Q8N0Z6 440 aa23.63■■□□□ 1.37
SMPD3-201ENST00000219334 FANCD2Q9BXW9 1451 aa23.62■■□□□ 1.37
SMPD3-201ENST00000219334 PDE3BQ13370 1112 aa23.62■■□□□ 1.37
SMPD3-201ENST00000219334 MSNP26038 577 aaKnown RBP23.62■■□□□ 1.37
SMPD3-201ENST00000219334 MINK1Q8N4C8 1332 aaPredicted RBP23.62■■□□□ 1.37
SMPD3-201ENST00000219334 ST20-MTHFSA0A0A6YYL1 179 aa23.61■■□□□ 1.37
SMPD3-201ENST00000219334 ATAD2BQ9ULI0 1458 aa23.6■■□□□ 1.37
SMPD3-201ENST00000219334 MFAP1P55081 439 aaKnown RBP23.6■■□□□ 1.37
SMPD3-201ENST00000219334 PSME1Q06323 249 aa23.59■■□□□ 1.37
SMPD3-201ENST00000219334 PANK3Q9H999 370 aa23.59■■□□□ 1.37
SMPD3-201ENST00000219334 TCERG1O14776 1098 aaKnown RBP23.58■■□□□ 1.37
SMPD3-201ENST00000219334 SYAP1Q96A49 352 aaPredicted RBP23.58■■□□□ 1.37
SMPD3-201ENST00000219334 TPM4P67936 248 aa23.58■■□□□ 1.36
SMPD3-201ENST00000219334 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.57■■□□□ 1.36
SMPD3-201ENST00000219334 RRP7AQ9Y3A4 280 aaKnown RBP23.57■■□□□ 1.36
SMPD3-201ENST00000219334 MARCH6O60337 910 aa23.57■■□□□ 1.36
SMPD3-201ENST00000219334 KIF15Q9NS87 1388 aa23.57■■□□□ 1.36
SMPD3-201ENST00000219334 NEXNQ0ZGT2 675 aa23.56■■□□□ 1.36
SMPD3-201ENST00000219334 KIF3AQ9Y496 699 aa23.56■■□□□ 1.36
SMPD3-201ENST00000219334 ELL2O00472 640 aaPredicted RBP23.56■■□□□ 1.36
SMPD3-201ENST00000219334 VPS53Q5VIR6 699 aa23.54■■□□□ 1.36
SMPD3-201ENST00000219334 SYTL4Q96C24 671 aaPredicted RBP23.53■■□□□ 1.36
SMPD3-201ENST00000219334 SLKQ9H2G2 1235 aaPredicted RBP23.52■■□□□ 1.36
SMPD3-201ENST00000219334 CSPP1Q1MSJ5 1256 aa23.52■■□□□ 1.36
SMPD3-201ENST00000219334 MYBBP1AQ9BQG0 1328 aaKnown RBP23.52■■□□□ 1.36
SMPD3-201ENST00000219334 WIZO95785 1651 aa23.51■■□□□ 1.35
SMPD3-201ENST00000219334 ATF3P18847 181 aa23.51■■□□□ 1.35
SMPD3-201ENST00000219334 NGEFQ8N5V2 710 aa23.51■■□□□ 1.35
SMPD3-201ENST00000219334 NOL10Q9BSC4 688 aaKnown RBP23.49■■□□□ 1.35
SMPD3-201ENST00000219334 NOL8Q76FK4 1167 aaKnown RBP23.49■■□□□ 1.35
SMPD3-201ENST00000219334 KIF16BQ96L93 1317 aa23.49■■□□□ 1.35
SMPD3-201ENST00000219334 EIF2S2P20042 333 aaKnown RBP23.48■■□□□ 1.35
SMPD3-201ENST00000219334 LRRFIP1Q32MZ4 808 aaKnown RBP23.48■■□□□ 1.35
SMPD3-201ENST00000219334 C9orf78Q9NZ63 289 aaPredicted RBP23.46■■□□□ 1.35
SMPD3-201ENST00000219334 ST18O60284 1047 aa23.46■■□□□ 1.35
SMPD3-201ENST00000219334 AMOTL1Q8IY63 956 aa23.46■■□□□ 1.35
SMPD3-201ENST00000219334 NOC3LQ8WTT2 800 aaKnown RBP23.46■■□□□ 1.35
SMPD3-201ENST00000219334 CHMP4CQ96CF2 233 aa23.46■■□□□ 1.35
SMPD3-201ENST00000219334 TRIM34Q9BYJ4 488 aa23.45■■□□□ 1.34
SMPD3-201ENST00000219334 DIAPH1O60610 1272 aaKnown RBP23.45■■□□□ 1.34
SMPD3-201ENST00000219334 SF3A1Q15459 793 aaKnown RBP23.45■■□□□ 1.34
SMPD3-201ENST00000219334 AKAP17AQ02040 695 aaKnown RBP23.44■■□□□ 1.34
SMPD3-201ENST00000219334 RILPL2Q969X0 211 aa23.43■■□□□ 1.34
SMPD3-201ENST00000219334 RTN4Q9NQC3 1192 aaKnown RBP23.43■■□□□ 1.34
SMPD3-201ENST00000219334 DDX58O95786 925 aaKnown RBP23.43■■□□□ 1.34
SMPD3-201ENST00000219334 ZKSCAN2Q63HK3 967 aa23.43■■□□□ 1.34
SMPD3-201ENST00000219334 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.42■■□□□ 1.34
SMPD3-201ENST00000219334 E9PSI1 815 aa23.42■■□□□ 1.34
SMPD3-201ENST00000219334 CREBRFQ8IUR6 639 aa23.42■■□□□ 1.34
SMPD3-201ENST00000219334 RAPGEF4Q8WZA2 1011 aa23.41■■□□□ 1.34
SMPD3-201ENST00000219334 GZF1Q9H116 711 aaPredicted RBP23.41■■□□□ 1.34
SMPD3-201ENST00000219334 SYNE3Q6ZMZ3 975 aa23.4■■□□□ 1.34
SMPD3-201ENST00000219334 BCL2L13Q9BXK5 485 aa23.4■■□□□ 1.34
SMPD3-201ENST00000219334 CTDP1Q9Y5B0 961 aaPredicted RBP23.4■■□□□ 1.34
SMPD3-201ENST00000219334 GAPVD1Q14C86 1478 aa23.4■■□□□ 1.34
SMPD3-201ENST00000219334 PRM3Q9NNZ6 103 aa23.4■■□□□ 1.34
SMPD3-201ENST00000219334 VPS37DQ86XT2 251 aa23.39■■□□□ 1.33
SMPD3-201ENST00000219334 ANKRD45Q5TZF3 282 aa23.38■■□□□ 1.33
SMPD3-201ENST00000219334 AMER1Q5JTC6 1135 aaPredicted RBP23.38■■□□□ 1.33
SMPD3-201ENST00000219334 CEP89Q96ST8 783 aa23.38■■□□□ 1.33
SMPD3-201ENST00000219334 DHX57Q6P158 1386 aaKnown RBP23.36■■□□□ 1.33
SMPD3-201ENST00000219334 USP47Q96K76 1375 aa23.36■■□□□ 1.33
SMPD3-201ENST00000219334 H3BQV1 296 aa23.36■■□□□ 1.33
SMPD3-201ENST00000219334 IFFO2Q5TF58 517 aa23.36■■□□□ 1.33
SMPD3-201ENST00000219334 DIAPH3Q9NSV4 1193 aa23.36■■□□□ 1.33
SMPD3-201ENST00000219334 RAD21O60216 631 aa23.36■■□□□ 1.33
SMPD3-201ENST00000219334 FAM184AQ8NB25 1140 aa23.36■■□□□ 1.33
SMPD3-201ENST00000219334 RBM19Q9Y4C8 960 aaKnown RBP23.36■■□□□ 1.33
SMPD3-201ENST00000219334 CPLX2Q6PUV4 134 aaKnown RBP23.36■■□□□ 1.33
SMPD3-201ENST00000219334 STAC3Q96MF2 364 aa23.35■■□□□ 1.33
SMPD3-201ENST00000219334 FOXD4L1Q9NU39 408 aa23.35■■□□□ 1.33
SMPD3-201ENST00000219334 MYOM3Q5VTT5 1437 aa23.35■■□□□ 1.33
SMPD3-201ENST00000219334 KLHL34Q8N239 644 aa23.34■■□□□ 1.33
SMPD3-201ENST00000219334 PHF23Q9BUL5 403 aaPredicted RBP23.34■■□□□ 1.33
SMPD3-201ENST00000219334 NLRP2Q9NX02 1062 aa23.33■■□□□ 1.33
SMPD3-201ENST00000219334 TCEAL9Q9UHQ7 104 aa23.33■■□□□ 1.33
SMPD3-201ENST00000219334 NECTIN2Q92692 538 aa23.33■■□□□ 1.33
SMPD3-201ENST00000219334 RUFY2Q8WXA3 655 aa23.33■■□□□ 1.33
SMPD3-201ENST00000219334 RIPK4P57078 832 aa23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms