RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 EIF3AQ14152 1382 aaKnown RBP12.95□□□□□ -0.34
VCL-201ENST00000211998 CHMP5Q9NZZ3 219 aa12.95□□□□□ -0.34
VCL-201ENST00000211998 CCDC88BA6NC98 1476 aa12.94□□□□□ -0.34
VCL-201ENST00000211998 GPS2Q13227 327 aa12.94□□□□□ -0.34
VCL-201ENST00000211998 KIAA1211Q6ZU35 1233 aa12.94□□□□□ -0.34
VCL-201ENST00000211998 PLIN1O60240 522 aa12.93□□□□□ -0.34
VCL-201ENST00000211998 NOL8Q76FK4 1167 aaKnown RBP12.93□□□□□ -0.34
VCL-201ENST00000211998 ZBED9Q6R2W3 1325 aa12.93□□□□□ -0.34
VCL-201ENST00000211998 CCDC66A2RUB6 948 aa12.93□□□□□ -0.34
VCL-201ENST00000211998 ST18O60284 1047 aa12.92□□□□□ -0.34
VCL-201ENST00000211998 NOM1Q5C9Z4 860 aaKnown RBP12.92□□□□□ -0.34
VCL-201ENST00000211998 CRBNQ96SW2 442 aa12.92□□□□□ -0.34
VCL-201ENST00000211998 ROCK2O75116 1388 aaKnown RBP12.92□□□□□ -0.34
VCL-201ENST00000211998 CCAR2Q8N163 923 aaKnown RBP12.92□□□□□ -0.34
VCL-201ENST00000211998 GNL2Q13823 731 aaKnown RBP12.91□□□□□ -0.34
VCL-201ENST00000211998 SAFB2Q14151 953 aaKnown RBP eCLIP12.91□□□□□ -0.34
VCL-201ENST00000211998 NUP155O75694 1391 aa12.9□□□□□ -0.34
VCL-201ENST00000211998 FRAT2O75474 233 aaPredicted RBP12.9□□□□□ -0.34
VCL-201ENST00000211998 SOX12O15370 315 aa12.9□□□□□ -0.34
VCL-201ENST00000211998 KIF16BQ96L93 1317 aa12.9□□□□□ -0.34
VCL-201ENST00000211998 CLUAP1Q96AJ1 413 aa12.9□□□□□ -0.34
VCL-201ENST00000211998 RSPH4AQ5TD94 716 aa12.89□□□□□ -0.35
VCL-201ENST00000211998 NASPP49321 788 aaPredicted RBP12.89□□□□□ -0.35
VCL-201ENST00000211998 STK26Q9P289 416 aa12.89□□□□□ -0.35
VCL-201ENST00000211998 MPHOSPH9Q99550 1183 aa12.89□□□□□ -0.35
VCL-201ENST00000211998 MROH2BQ7Z745 1585 aa12.88□□□□□ -0.35
VCL-201ENST00000211998 RAB3GAP2Q9H2M9 1393 aa12.88□□□□□ -0.35
VCL-201ENST00000211998 FOXD4L6Q3SYB3 417 aaPredicted RBP12.88□□□□□ -0.35
VCL-201ENST00000211998 FOXD4L3Q6VB84 417 aaPredicted RBP12.88□□□□□ -0.35
VCL-201ENST00000211998 MSH5O43196 834 aa12.87□□□□□ -0.35
VCL-201ENST00000211998 ZMYND15Q9H091 742 aa12.87□□□□□ -0.35
VCL-201ENST00000211998 DIAPH3Q9NSV4 1193 aa12.87□□□□□ -0.35
VCL-201ENST00000211998 CCDC39Q9UFE4 941 aa12.87□□□□□ -0.35
VCL-201ENST00000211998 CENPJQ9HC77 1338 aaPredicted RBP12.86□□□□□ -0.35
VCL-201ENST00000211998 GOLGA6L19H0YKK7 550 aa12.86□□□□□ -0.35
VCL-201ENST00000211998 HSP90B1P14625 803 aaKnown RBP12.86□□□□□ -0.35
VCL-201ENST00000211998 ABCC8Q09428 1581 aa12.86□□□□□ -0.35
VCL-201ENST00000211998 TRAK2O60296 914 aa12.85□□□□□ -0.35
VCL-201ENST00000211998 TPM3P06753 285 aa12.85□□□□□ -0.35
VCL-201ENST00000211998 U2AF1L5P0DN76 240 aaPredicted RBP12.85□□□□□ -0.35
VCL-201ENST00000211998 U2AF1Q01081 240 aaKnown RBP eCLIP12.85□□□□□ -0.351e-8■□□□□ 9.3
VCL-201ENST00000211998 CCDC18Q5T9S5 1454 aa12.85□□□□□ -0.35
VCL-201ENST00000211998 HDAC5Q9UQL6 1122 aa12.85□□□□□ -0.35
VCL-201ENST00000211998 TDRD9Q8NDG6 1382 aaKnown RBP12.85□□□□□ -0.35
VCL-201ENST00000211998 KANK4Q5T7N3 995 aaPredicted RBP12.85□□□□□ -0.35
VCL-201ENST00000211998 TERF2IPQ9NYB0 399 aa12.85□□□□□ -0.35
VCL-201ENST00000211998 PATL2C9JE40 543 aaKnown RBP12.84□□□□□ -0.35
VCL-201ENST00000211998 SPAG9O60271 1321 aaKnown RBP12.84□□□□□ -0.35
VCL-201ENST00000211998 SMC4Q9NTJ3 1288 aa12.84□□□□□ -0.35
VCL-201ENST00000211998 TOP2AP11388 1531 aaKnown RBP12.84□□□□□ -0.35
VCL-201ENST00000211998 MAPK8IP2Q13387 824 aaPredicted RBP12.83□□□□□ -0.35
VCL-201ENST00000211998 NLRP13Q86W25 1043 aa12.83□□□□□ -0.35
VCL-201ENST00000211998 RAPGEF2Q9Y4G8 1499 aa12.83□□□□□ -0.36
VCL-201ENST00000211998 CSB-PGBD3P0DP91 1061 aa12.83□□□□□ -0.36
VCL-201ENST00000211998 BCL11BQ9C0K0 894 aaPredicted RBP12.83□□□□□ -0.36
VCL-201ENST00000211998 CWC15Q9P013 229 aaKnown RBP12.83□□□□□ -0.36
VCL-201ENST00000211998 BECN2A8MW95 431 aa12.83□□□□□ -0.36
VCL-201ENST00000211998 TRIM6-TRIM34B2RNG4 842 aa12.82□□□□□ -0.36
VCL-201ENST00000211998 PRKRIP1Q9H875 184 aaPredicted RBP12.82□□□□□ -0.36
VCL-201ENST00000211998 ARGLU1Q9NWB6 273 aaPredicted RBP12.82□□□□□ -0.36
VCL-201ENST00000211998 IFT57Q9NWB7 429 aa12.82□□□□□ -0.36
VCL-201ENST00000211998 CCDC173Q0VFZ6 552 aa12.82□□□□□ -0.36
VCL-201ENST00000211998 MCTP1Q6DN14 999 aa12.82□□□□□ -0.36
VCL-201ENST00000211998 STK31Q9BXU1 1019 aa12.82□□□□□ -0.36
VCL-201ENST00000211998 KIF3BO15066 747 aa12.81□□□□□ -0.36
VCL-201ENST00000211998 FOXD1Q16676 465 aa12.81□□□□□ -0.36
VCL-201ENST00000211998 CCDC146Q8IYE0 955 aa12.81□□□□□ -0.36
VCL-201ENST00000211998 EID1Q9Y6B2 187 aa12.81□□□□□ -0.36
VCL-201ENST00000211998 HOMER1Q86YM7 354 aa12.8□□□□□ -0.36
VCL-201ENST00000211998 UQCRHLA0A096LP55 91 aa12.8□□□□□ -0.36
VCL-201ENST00000211998 UQCRHP07919 91 aa12.8□□□□□ -0.36
VCL-201ENST00000211998 HMGN5P82970 282 aaKnown RBP12.8□□□□□ -0.36
VCL-201ENST00000211998 LMOD3Q0VAK6 560 aa12.8□□□□□ -0.36
VCL-201ENST00000211998 ATP6V1DQ9Y5K8 247 aa12.8□□□□□ -0.36
VCL-201ENST00000211998 CADPSQ9ULU8 1353 aa12.79□□□□□ -0.36
VCL-201ENST00000211998 DHX57Q6P158 1386 aaKnown RBP12.79□□□□□ -0.36
VCL-201ENST00000211998 PHLDB1Q86UU1 1377 aa12.79□□□□□ -0.36
VCL-201ENST00000211998 ESPNB1AK53 854 aa12.79□□□□□ -0.36
VCL-201ENST00000211998 PDE4CQ08493 712 aa12.78□□□□□ -0.36
VCL-201ENST00000211998 HMMRO75330 724 aa12.78□□□□□ -0.36
VCL-201ENST00000211998 CREBRFQ8IUR6 639 aa12.78□□□□□ -0.36
VCL-201ENST00000211998 GPATCH3Q96I76 525 aa12.78□□□□□ -0.36
VCL-201ENST00000211998 RNF214Q8ND24 703 aa12.78□□□□□ -0.36
VCL-201ENST00000211998 MNS1Q8NEH6 495 aa12.77□□□□□ -0.36
VCL-201ENST00000211998 PRDM10Q9NQV6 1147 aa12.77□□□□□ -0.37
VCL-201ENST00000211998 COG6Q9Y2V7 657 aa12.77□□□□□ -0.37
VCL-201ENST00000211998 MYBBP1AQ9BQG0 1328 aaKnown RBP12.77□□□□□ -0.37
VCL-201ENST00000211998 TAF3Q5VWG9 929 aa12.77□□□□□ -0.37
VCL-201ENST00000211998 TMX4Q9H1E5 349 aaPredicted RBP12.77□□□□□ -0.37
VCL-201ENST00000211998 WASHC2CQ9Y4E1 1318 aa12.76□□□□□ -0.37
VCL-201ENST00000211998 NUCB2P80303 420 aa12.76□□□□□ -0.37
VCL-201ENST00000211998 ISY1Q9ULR0 285 aaKnown RBP12.76□□□□□ -0.37
VCL-201ENST00000211998 CGNL1Q0VF96 1302 aa12.76□□□□□ -0.37
VCL-201ENST00000211998 GRPEL1Q9HAV7 217 aa12.76□□□□□ -0.37
VCL-201ENST00000211998 UACAQ9BZF9 1416 aa12.76□□□□□ -0.37
VCL-201ENST00000211998 CCDC34Q96HJ3 373 aa12.76□□□□□ -0.37
VCL-201ENST00000211998 C22orf23Q9BZE7 217 aa12.76□□□□□ -0.37
VCL-201ENST00000211998 ANKRD45Q5TZF3 282 aa12.75□□□□□ -0.37
VCL-201ENST00000211998 HNRNPMP52272 730 aaKnown RBP eCLIP12.75□□□□□ -0.371e-6■■■■□ 22.5
VCL-201ENST00000211998 SF3A1Q15459 793 aaKnown RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms