RNA–Protein interactions for RNA: ENSMUST00000042717.12

Trim39-201, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,085 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-201ENSMUST00000042717 Grwd1Q810D6 446 aaKnown RBP12.38□□□□□ -0.43
Trim39-201ENSMUST00000042717 Usp54Q8BL06 1588 aaKnown RBP12.38□□□□□ -0.43
Trim39-201ENSMUST00000042717 Naip5Q9R016 1403 aa12.37□□□□□ -0.43
Trim39-201ENSMUST00000042717 Lamc1P02468 1607 aaKnown RBP12.37□□□□□ -0.43
Trim39-201ENSMUST00000042717 Rprd2Q6NXI6 1469 aaKnown RBP12.37□□□□□ -0.43
Trim39-201ENSMUST00000042717 ClspnQ80YR7 1315 aa12.36□□□□□ -0.43
Trim39-201ENSMUST00000042717 Neurl4Q5NCX5 1563 aa12.36□□□□□ -0.43
Trim39-201ENSMUST00000042717 Xrn1P97789 1719 aaKnown RBP12.36□□□□□ -0.43
Trim39-201ENSMUST00000042717 Nos1Q9Z0J4 1429 aa12.35□□□□□ -0.43
Trim39-201ENSMUST00000042717 AglF8VPN4 1532 aa12.35□□□□□ -0.43
Trim39-201ENSMUST00000042717 Ttc37F8VPK0 1563 aa12.35□□□□□ -0.43
Trim39-201ENSMUST00000042717 Yeats2Q3TUF7 1407 aa12.34□□□□□ -0.43
Trim39-201ENSMUST00000042717 Pik3c2gO70167 1506 aa12.34□□□□□ -0.43
Trim39-201ENSMUST00000042717 Sin3aQ60520 1274 aaKnown RBP12.34□□□□□ -0.43
Trim39-201ENSMUST00000042717 PtprgQ05909 1442 aa12.34□□□□□ -0.43
Trim39-201ENSMUST00000042717 Atp7aQ64430 1491 aa12.34□□□□□ -0.43
Trim39-201ENSMUST00000042717 Zbtb4Q5F293 982 aa12.32□□□□□ -0.44
Trim39-201ENSMUST00000042717 Stk24Q99KH8 431 aa12.32□□□□□ -0.44
Trim39-201ENSMUST00000042717 Znf518aB2RRF6 1478 aaKnown RBP12.32□□□□□ -0.44
Trim39-201ENSMUST00000042717 Kif21bQ9QXL1 1668 aa12.32□□□□□ -0.44
Trim39-201ENSMUST00000042717 Myom3A2ABU4 1439 aa12.32□□□□□ -0.44
Trim39-201ENSMUST00000042717 Kif1bQ60575 1816 aaKnown RBP12.31□□□□□ -0.44
Trim39-201ENSMUST00000042717 Dip2cE9PWR4 1557 aa12.31□□□□□ -0.44
Trim39-201ENSMUST00000042717 Gli2Q0VGT2 1544 aa12.31□□□□□ -0.44
Trim39-201ENSMUST00000042717 ShprhQ7TPQ3 1674 aa12.31□□□□□ -0.44
Trim39-201ENSMUST00000042717 Kif14L0N7N1 1674 aaKnown RBP12.31□□□□□ -0.44
Trim39-201ENSMUST00000042717 Kdm5cP41230 1554 aa12.31□□□□□ -0.44
Trim39-201ENSMUST00000042717 Fndc1E9Q043 1732 aa12.3□□□□□ -0.44
Trim39-201ENSMUST00000042717 Atp10aO54827 1508 aa12.3□□□□□ -0.44
Trim39-201ENSMUST00000042717 Mroh3A0A1D5RM54 893 aa12.29□□□□□ -0.44
Trim39-201ENSMUST00000042717 Nsd2Q8BVE8 1365 aa12.29□□□□□ -0.44
Trim39-201ENSMUST00000042717 Dnajc5P60904 198 aa12.29□□□□□ -0.44
Trim39-201ENSMUST00000042717 Dnajc5gQ8C632 165 aa12.29□□□□□ -0.44
Trim39-201ENSMUST00000042717 Sall3Q62255 1320 aa12.29□□□□□ -0.44
Trim39-201ENSMUST00000042717 Naip6Q9JIB6 1403 aa12.28□□□□□ -0.44
Trim39-201ENSMUST00000042717 Abca17E9PX95 1733 aa12.28□□□□□ -0.44
Trim39-201ENSMUST00000042717 Washc2Q6PGL7 1334 aa12.28□□□□□ -0.44
Trim39-201ENSMUST00000042717 Cfap65Q3V0B4 1847 aa12.28□□□□□ -0.44
Trim39-201ENSMUST00000042717 RereQ80TZ9 1558 aa12.28□□□□□ -0.44
Trim39-201ENSMUST00000042717 Ttc21bQ0HA38 1315 aa12.28□□□□□ -0.44
Trim39-201ENSMUST00000042717 Ifit1bl1D3Z6F0 470 aa12.26□□□□□ -0.45
Trim39-201ENSMUST00000042717 Synj2Q9D2G5 1434 aa12.26□□□□□ -0.45
Trim39-201ENSMUST00000042717 Afap1Q80YS6 731 aa12.26□□□□□ -0.45
Trim39-201ENSMUST00000042717 Pcdh10E9PXQ7 1057 aa12.25□□□□□ -0.45
Trim39-201ENSMUST00000042717 Os9Q8K2C7 672 aa12.25□□□□□ -0.45
Trim39-201ENSMUST00000042717 Dot1lQ6XZL8 1540 aa12.25□□□□□ -0.45
Trim39-201ENSMUST00000042717 Ylpm1Q9R0I7 1386 aaKnown RBP12.25□□□□□ -0.45
Trim39-201ENSMUST00000042717 Gm13697A2AK42 830 aa12.25□□□□□ -0.45
Trim39-201ENSMUST00000042717 Kdm2aP59997 1161 aa12.25□□□□□ -0.45
Trim39-201ENSMUST00000042717 Tarbp1E9Q368 1579 aa12.25□□□□□ -0.45
Trim39-201ENSMUST00000042717 Rundc1Q0VDN7 615 aa12.24□□□□□ -0.45
Trim39-201ENSMUST00000042717 Slc24a1Q91WD8 1130 aa12.24□□□□□ -0.45
Trim39-201ENSMUST00000042717 Abca6Q8K441 1624 aa12.24□□□□□ -0.45
Trim39-201ENSMUST00000042717 Myo5cE9Q1F5 1742 aa12.24□□□□□ -0.45
Trim39-201ENSMUST00000042717 DiexfQ8BTT6 772 aaKnown RBP12.24□□□□□ -0.45
Trim39-201ENSMUST00000042717 Hecw2Q6I6G8 1578 aa12.23□□□□□ -0.45
Trim39-201ENSMUST00000042717 AdgbG3UZ78 1657 aa12.23□□□□□ -0.45
Trim39-201ENSMUST00000042717 Robo2Q7TPD3 1470 aa12.23□□□□□ -0.45
Trim39-201ENSMUST00000042717 Card11Q8CIS0 1159 aa12.22□□□□□ -0.45
Trim39-201ENSMUST00000042717 Edc4Q3UJB9 1406 aaKnown RBP12.22□□□□□ -0.45
Trim39-201ENSMUST00000042717 Cdc42bpgQ80UW5 1551 aa12.22□□□□□ -0.45
Trim39-201ENSMUST00000042717 Dapk1Q80YE7 1442 aa12.22□□□□□ -0.45
Trim39-201ENSMUST00000042717 Cul9Q80TT8 1865 aa12.21□□□□□ -0.46
Trim39-201ENSMUST00000042717 Kiaa0556Q8C753 1610 aa12.2□□□□□ -0.46
Trim39-201ENSMUST00000042717 Hdac5Q9Z2V6 1113 aa12.2□□□□□ -0.46
Trim39-201ENSMUST00000042717 ErbinQ80TH2 1402 aa12.2□□□□□ -0.46
Trim39-201ENSMUST00000042717 Safb2Q80YR5 991 aaKnown RBP12.2□□□□□ -0.46
Trim39-201ENSMUST00000042717 Rock1P70335 1354 aa12.2□□□□□ -0.46
Trim39-201ENSMUST00000042717 Plch2A2AP18 1501 aa12.2□□□□□ -0.46
Trim39-201ENSMUST00000042717 Prex1Q69ZK0 1650 aa12.19□□□□□ -0.46
Trim39-201ENSMUST00000042717 Cdk13Q69ZA1 1511 aaKnown RBP12.19□□□□□ -0.46
Trim39-201ENSMUST00000042717 Topbp1Q6ZQF0 1515 aa12.19□□□□□ -0.46
Trim39-201ENSMUST00000042717 DroshaQ5HZJ0 1373 aaKnown RBP12.18□□□□□ -0.46
Trim39-201ENSMUST00000042717 NpatQ8BMA5 1420 aa12.18□□□□□ -0.46
Trim39-201ENSMUST00000042717 Mug2P28666 1451 aa12.18□□□□□ -0.46
Trim39-201ENSMUST00000042717 Camsap2Q8C1B1 1461 aa12.17□□□□□ -0.46
Trim39-201ENSMUST00000042717 AnkarA2RT91 1465 aa12.17□□□□□ -0.46
Trim39-201ENSMUST00000042717 Atp1b4Q99ME6 356 aa12.16□□□□□ -0.46
Trim39-201ENSMUST00000042717 Qser1A2BIE1 1698 aa12.16□□□□□ -0.46
Trim39-201ENSMUST00000042717 Uggt2E9Q4X2 1504 aa12.14□□□□□ -0.47
Trim39-201ENSMUST00000042717 Gm20521D3Z5F7 333 aa12.14□□□□□ -0.47
Trim39-201ENSMUST00000042717 Abcc6Q9R1S7 1498 aa12.14□□□□□ -0.47
Trim39-201ENSMUST00000042717 P3h3Q8CG70 732 aa12.13□□□□□ -0.47
Trim39-201ENSMUST00000042717 Polr3aB2RXC6 1390 aa12.13□□□□□ -0.47
Trim39-201ENSMUST00000042717 Mbd5B1AYB6 1498 aa12.13□□□□□ -0.47
Trim39-201ENSMUST00000042717 Ppip5k1A2ARP1 1436 aa12.12□□□□□ -0.47
Trim39-201ENSMUST00000042717 Srpk2O54781 681 aaKnown RBP12.12□□□□□ -0.47
Trim39-201ENSMUST00000042717 Fan1Q69ZT1 1020 aa12.12□□□□□ -0.47
Trim39-201ENSMUST00000042717 Iqgap3F8VQ29 1632 aa12.11□□□□□ -0.47
Trim39-201ENSMUST00000042717 AatkQ80YE4 1365 aa12.11□□□□□ -0.47
Trim39-201ENSMUST00000042717 Tmem131lQ3U3D7 1597 aa12.1□□□□□ -0.47
Trim39-201ENSMUST00000042717 Talpid3E9PV87 1520 aa12.1□□□□□ -0.47
Trim39-201ENSMUST00000042717 Tulp4Q9JIL5 1547 aa12.1□□□□□ -0.47
Trim39-201ENSMUST00000042717 MyclP10166 368 aa12.09□□□□□ -0.47
Trim39-201ENSMUST00000042717 Adamts13Q769J6 1426 aa12.09□□□□□ -0.47
Trim39-201ENSMUST00000042717 Cpsf1Q9EPU4 1441 aaKnown RBP12.09□□□□□ -0.47
Trim39-201ENSMUST00000042717 Cwc22Q8C5N3 908 aaKnown RBP12.09□□□□□ -0.47
Trim39-201ENSMUST00000042717 Trpm1Q2TV84 1622 aa12.09□□□□□ -0.47
Trim39-201ENSMUST00000042717 Iqgap1Q9JKF1 1657 aaKnown RBP12.08□□□□□ -0.48
Trim39-201ENSMUST00000042717 MlecQ6ZQI3 291 aaKnown RBP12.08□□□□□ -0.48
Retrieved 100 of 22,080 RNA–protein pairs in 39.4 ms