RNA–Protein interactions for RNA: ENSMUST00000028728.5

Ubr1-201, Transcript of E3 ubiquitin-protein ligase UBR1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ubr1, Length 7,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr1-201ENSMUST00000028728 Taf3Q5HZG4 932 aa12.54□□□□□ -0.4
Ubr1-201ENSMUST00000028728 Iffo2Q8R2V2 512 aa12.54□□□□□ -0.4
Ubr1-201ENSMUST00000028728 1700019A02RikA0A087WPV9 146 aa12.54□□□□□ -0.4
Ubr1-201ENSMUST00000028728 Stk24Q99KH8 431 aa12.54□□□□□ -0.4
Ubr1-201ENSMUST00000028728 Ttll13A4Q9F6 804 aa12.54□□□□□ -0.4
Ubr1-201ENSMUST00000028728 Sf3a1Q8K4Z5 791 aaKnown RBP12.53□□□□□ -0.4
Ubr1-201ENSMUST00000028728 Dhx57Q6P5D3 1388 aaKnown RBP12.53□□□□□ -0.4
Ubr1-201ENSMUST00000028728 Sh3bp5Q9Z131 463 aa12.53□□□□□ -0.4
Ubr1-201ENSMUST00000028728 Cnga1P29974 684 aa12.53□□□□□ -0.4
Ubr1-201ENSMUST00000028728 Nup155Q99P88 1391 aaKnown RBP12.52□□□□□ -0.4
Ubr1-201ENSMUST00000028728 Gpatch11Q3UFS4 262 aa12.52□□□□□ -0.4
Ubr1-201ENSMUST00000028728 Eif4g2Q62448 906 aaKnown RBP12.52□□□□□ -0.4
Ubr1-201ENSMUST00000028728 Gripap1Q8VD04 806 aa12.52□□□□□ -0.41
Ubr1-201ENSMUST00000028728 Kif20aP97329 887 aa12.52□□□□□ -0.41
Ubr1-201ENSMUST00000028728 Pak3Q61036 559 aa12.52□□□□□ -0.41
Ubr1-201ENSMUST00000028728 Filip1lQ6P6L0 1131 aa12.52□□□□□ -0.41
Ubr1-201ENSMUST00000028728 Kif4P33174 1231 aa12.52□□□□□ -0.41
Ubr1-201ENSMUST00000028728 Ccdc183A2AJB1 534 aa12.51□□□□□ -0.41
Ubr1-201ENSMUST00000028728 Rtf1A2AQ19 715 aaKnown RBP12.51□□□□□ -0.41
Ubr1-201ENSMUST00000028728 Tpm3-rs7D3Z2H9 248 aa12.51□□□□□ -0.41
Ubr1-201ENSMUST00000028728 EzrP26040 586 aaKnown RBP12.51□□□□□ -0.41
Ubr1-201ENSMUST00000028728 Tpm3P21107 285 aaKnown RBP12.5□□□□□ -0.41
Ubr1-201ENSMUST00000028728 Slc4a1apE9PX68 744 aa12.5□□□□□ -0.41
Ubr1-201ENSMUST00000028728 Irx6Q9ER75 438 aa12.5□□□□□ -0.41
Ubr1-201ENSMUST00000028728 PnisrA2AJT4 805 aaKnown RBP12.5□□□□□ -0.41
Ubr1-201ENSMUST00000028728 Pank3Q8R2W9 370 aa12.49□□□□□ -0.41
Ubr1-201ENSMUST00000028728 U2surpQ6NV83 1029 aaKnown RBP12.48□□□□□ -0.41
Ubr1-201ENSMUST00000028728 Plekhh1Q80TI1 1356 aa12.48□□□□□ -0.41
Ubr1-201ENSMUST00000028728 Ccnb3Q810T2 1396 aa12.48□□□□□ -0.41
Ubr1-201ENSMUST00000028728 Dapk1Q80YE7 1442 aa12.47□□□□□ -0.41
Ubr1-201ENSMUST00000028728 MecomP14404 1042 aa12.47□□□□□ -0.41
Ubr1-201ENSMUST00000028728 Rassf8Q8CJ96 419 aa12.47□□□□□ -0.41
Ubr1-201ENSMUST00000028728 Ciz1Q8VEH2 845 aa12.47□□□□□ -0.41
Ubr1-201ENSMUST00000028728 Znf330Q922H9 316 aa12.47□□□□□ -0.41
Ubr1-201ENSMUST00000028728 Gprasp1Q5U4C1 1347 aa12.47□□□□□ -0.41
Ubr1-201ENSMUST00000028728 Vps8Q0P5W1 1427 aa12.47□□□□□ -0.41
Ubr1-201ENSMUST00000028728 Fez1Q8K0X8 392 aa12.47□□□□□ -0.41
Ubr1-201ENSMUST00000028728 Cetn4Q8K4K1 168 aa12.47□□□□□ -0.41
Ubr1-201ENSMUST00000028728 Rpap1Q80TE0 1409 aa12.46□□□□□ -0.41
Ubr1-201ENSMUST00000028728 Anapc15P60007 132 aa12.46□□□□□ -0.41
Ubr1-201ENSMUST00000028728 Nap1l3Q794H2 544 aa12.46□□□□□ -0.42
Ubr1-201ENSMUST00000028728 Hmgn5Q9JL35 406 aa12.45□□□□□ -0.42
Ubr1-201ENSMUST00000028728 Rfx1P48377 963 aa12.45□□□□□ -0.42
Ubr1-201ENSMUST00000028728 Ccdc34Q3UI66 367 aa12.45□□□□□ -0.42
Ubr1-201ENSMUST00000028728 KinQ8K339 391 aa12.45□□□□□ -0.42
Ubr1-201ENSMUST00000028728 Fam184bQ0KK56 942 aa12.44□□□□□ -0.42
Ubr1-201ENSMUST00000028728 Spag9Q58A65 1321 aaKnown RBP12.44□□□□□ -0.42
Ubr1-201ENSMUST00000028728 Sh3bgrQ9WUZ7 214 aa12.44□□□□□ -0.42
Ubr1-201ENSMUST00000028728 Zscan10Q3URR7 782 aa12.43□□□□□ -0.42
Ubr1-201ENSMUST00000028728 Slc4a2P13808 1237 aaKnown RBP12.43□□□□□ -0.42
Ubr1-201ENSMUST00000028728 Ccdc146E9Q9F7 977 aa12.43□□□□□ -0.42
Ubr1-201ENSMUST00000028728 Utp3Q9JI13 469 aaKnown RBP12.43□□□□□ -0.42
Ubr1-201ENSMUST00000028728 Inpp5dQ9ES52 1191 aa12.42□□□□□ -0.42
Ubr1-201ENSMUST00000028728 Q3TQI7 289 aaKnown RBP12.42□□□□□ -0.42
Ubr1-201ENSMUST00000028728 Esx1O88933 382 aa12.41□□□□□ -0.42
Ubr1-201ENSMUST00000028728 Pds5bQ4VA53 1446 aaKnown RBP12.41□□□□□ -0.42
Ubr1-201ENSMUST00000028728 Anp32eP97822 260 aaKnown RBP12.41□□□□□ -0.42
Ubr1-201ENSMUST00000028728 G3bp1P97855 465 aaKnown RBP12.41□□□□□ -0.42
Ubr1-201ENSMUST00000028728 Tsen2Q6P7W5 460 aa12.41□□□□□ -0.42
Ubr1-201ENSMUST00000028728 GsdmaQ9EST1 446 aa12.41□□□□□ -0.42
Ubr1-201ENSMUST00000028728 Ppp2r3aB2RXC8 1150 aa12.41□□□□□ -0.42
Ubr1-201ENSMUST00000028728 Tpd52l1O54818 204 aa12.41□□□□□ -0.42
Ubr1-201ENSMUST00000028728 1700010I14RikQ7TPG0 532 aa12.41□□□□□ -0.42
Ubr1-201ENSMUST00000028728 Ccdc30Q8BVF4 654 aa12.41□□□□□ -0.42
Ubr1-201ENSMUST00000028728 Ccdc60Q8C4J0 545 aa12.41□□□□□ -0.42
Ubr1-201ENSMUST00000028728 Ccer1Q9CQL2 403 aa12.41□□□□□ -0.42
Ubr1-201ENSMUST00000028728 CrebrfQ8CDG5 640 aaKnown RBP12.41□□□□□ -0.42
Ubr1-201ENSMUST00000028728 Ncapd3Q6ZQK0 1506 aa12.41□□□□□ -0.42
Ubr1-201ENSMUST00000028728 Safb2Q80YR5 991 aaKnown RBP12.39□□□□□ -0.43
Ubr1-201ENSMUST00000028728 KarsQ99MN1 595 aaKnown RBP12.39□□□□□ -0.43
Ubr1-201ENSMUST00000028728 Cux1P53564 1515 aa12.39□□□□□ -0.43
Ubr1-201ENSMUST00000028728 Rpgrip1lQ8CG73 1264 aa12.39□□□□□ -0.43
Ubr1-201ENSMUST00000028728 Sycp2Q9CUU3 1500 aa12.39□□□□□ -0.43
Ubr1-201ENSMUST00000028728 Synj1Q8CHC4 1574 aa12.39□□□□□ -0.43
Ubr1-201ENSMUST00000028728 NaspQ99MD9 773 aaKnown RBP12.39□□□□□ -0.43
Ubr1-201ENSMUST00000028728 Fam43aQ8BUP8 424 aa12.38□□□□□ -0.43
Ubr1-201ENSMUST00000028728 Cwc15Q9JHS9 229 aaKnown RBP12.38□□□□□ -0.43
Ubr1-201ENSMUST00000028728 Dusp9Q7TNL7 452 aa12.38□□□□□ -0.43
Ubr1-201ENSMUST00000028728 CenpjQ569L8 1344 aa12.38□□□□□ -0.43
Ubr1-201ENSMUST00000028728 Mcm2P97310 904 aa12.37□□□□□ -0.43
Ubr1-201ENSMUST00000028728 Srek1Q8BZX4 494 aaKnown RBP12.37□□□□□ -0.43
Ubr1-201ENSMUST00000028728 Kif7B7ZNG0 1348 aa12.37□□□□□ -0.43
Ubr1-201ENSMUST00000028728 Plekhg5Q66T02 1073 aa12.37□□□□□ -0.43
Ubr1-201ENSMUST00000028728 Tnpo1Q8BFY9 898 aaKnown RBP12.37□□□□□ -0.43
Ubr1-201ENSMUST00000028728 BccipQ9CWI3 316 aa12.37□□□□□ -0.43
Ubr1-201ENSMUST00000028728 Tpm1P58771 284 aa12.36□□□□□ -0.43
Ubr1-201ENSMUST00000028728 Cdkn1cP49919 348 aa12.36□□□□□ -0.43
Ubr1-201ENSMUST00000028728 Brpf1B2RRD7 1212 aa12.35□□□□□ -0.43
Ubr1-201ENSMUST00000028728 Zrsr2Q62377 462 aaKnown RBP12.35□□□□□ -0.43
Ubr1-201ENSMUST00000028728 Efcab5A0JP43 1406 aa12.35□□□□□ -0.43
Ubr1-201ENSMUST00000028728 Zfp444Q3TDV8 331 aaKnown RBP12.35□□□□□ -0.43
Ubr1-201ENSMUST00000028728 IbspQ61711 324 aa12.35□□□□□ -0.43
Ubr1-201ENSMUST00000028728 Dnai2A2AC93 623 aa12.35□□□□□ -0.43
Ubr1-201ENSMUST00000028728 Dhx8A2A4P0 1244 aaKnown RBP12.34□□□□□ -0.43
Ubr1-201ENSMUST00000028728 CalrP14211 416 aaKnown RBP12.34□□□□□ -0.43
Ubr1-201ENSMUST00000028728 Fam13bQ8K2H3 851 aa12.34□□□□□ -0.43
Ubr1-201ENSMUST00000028728 Zkscan1Q8BGS3 561 aaKnown RBP12.34□□□□□ -0.43
Ubr1-201ENSMUST00000028728 A0A1L1SQF0 893 aa12.34□□□□□ -0.43
Ubr1-201ENSMUST00000028728 Sptbn5F6UCX4 1208 aa12.34□□□□□ -0.43
Ubr1-201ENSMUST00000028728 SkilQ60665 675 aa12.34□□□□□ -0.43
Retrieved 100 of 22,080 RNA–protein pairs in 27.7 ms