RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	HIS2	P38635	335 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	FHL1	P39521	936 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	ACO2	P39533	789 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	YNL194C	P40169	301 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	BTT1	P40314	149 aa	Predicted RBP	3.46	□□□□□ -1.86
NUP85	YJR042W	JJJ3	P47138	172 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	PKP2	P53170	491 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	SLX9	P53251	210 aa	Predicted RBP	3.46	□□□□□ -1.86
NUP85	YJR042W	RRN9	P53437	365 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	RPL22B	P56628	122 aa	Known RBP	3.46	□□□□□ -1.86
NUP85	YJR042W	YDC1	Q02896	317 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	GIP3	Q03016	1276 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	PLM2	Q04383	521 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	YDL109C	Q12103	647 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	USV1	Q12132	391 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	YLR108C	Q12259	485 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	SNF8	Q12483	233 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	SAL1	D6W196	494 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	YLL053C	P0CD98	152 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	CTR86	P25355	563 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	VMA6	P32366	345 aa	Known RBP	3.46	□□□□□ -1.86
NUP85	YJR042W	SKG6	P32900	734 aa	Predicted RBP	3.46	□□□□□ -1.86
NUP85	YJR042W	LOS1	P33418	1100 aa	Predicted RBP	3.46	□□□□□ -1.86
NUP85	YJR042W	SHP1	P34223	423 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	RIO2	P40160	425 aa	Known RBP	3.46	□□□□□ -1.86
NUP85	YJR042W	YKE4	P40544	346 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	YNL320W	P42840	284 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	YCH1	P42937	148 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	YFR057W	P43625	151 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	LIF1	P53150	421 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	SED5	Q01590	340 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	RRP17	Q04031	235 aa	Predicted RBP	3.46	□□□□□ -1.86
NUP85	YJR042W	EMI2	Q04409	500 aa	Known RBP	3.46	□□□□□ -1.86
NUP85	YJR042W	YLR346C	Q06139	101 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	YDL086W	Q07505	273 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	TAF10	Q12030	206 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	YKL033W-A	Q86ZR7	236 aa		3.46	□□□□□ -1.86
NUP85	YJR042W	MES1	P00958	751 aa	Known RBP	3.45	□□□□□ -1.86
NUP85	YJR042W	TKL1	P23254	680 aa	Known RBP	3.45	□□□□□ -1.86
NUP85	YJR042W	RFA3	P26755	122 aa	Known RBP	3.45	□□□□□ -1.86
NUP85	YJR042W	CYS4	P32582	507 aa	Known RBP	3.45	□□□□□ -1.86
NUP85	YJR042W	VAM7	P32912	316 aa		3.45	□□□□□ -1.86
NUP85	YJR042W	PCF11	P39081	626 aa	Predicted RBP	3.45	□□□□□ -1.86
NUP85	YJR042W	YAL037W	P39728	267 aa		3.45	□□□□□ -1.86
NUP85	YJR042W	NBP1	P52919	319 aa	Predicted RBP	3.45	□□□□□ -1.86
NUP85	YJR042W	NIF3	P53081	288 aa		3.45	□□□□□ -1.86
NUP85	YJR042W	YGR151C	P53287	111 aa		3.45	□□□□□ -1.86
NUP85	YJR042W	ORC3	P54790	616 aa		3.45	□□□□□ -1.86
NUP85	YJR042W	SEC13	Q04491	297 aa	Known RBP	3.45	□□□□□ -1.86
NUP85	YJR042W	FAR8	Q05040	523 aa		3.45	□□□□□ -1.86
NUP85	YJR042W	NUP1	P20676	1076 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	PRR1	P28708	518 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	YKL187C	P34231	750 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	DTR1	P38125	572 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	DBP8	P38719	431 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	LNP1	P38878	278 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	ALG8	P40351	577 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	QRI1	P43123	477 aa	Known RBP	3.44	□□□□□ -1.86
NUP85	YJR042W	TMA22	P47089	198 aa	Predicted RBP	3.44	□□□□□ -1.86
NUP85	YJR042W	JHD2	P47156	728 aa	Predicted RBP	3.44	□□□□□ -1.86
NUP85	YJR042W	YGR168C	P53293	376 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	OKP1	P53298	406 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	TRS23	Q03784	219 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	HSP31	Q04432	237 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	NNT1	Q05874	261 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	ARO10	Q06408	635 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	ATP6	P00854	259 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	ILV1	P00927	576 aa	Known RBP	3.44	□□□□□ -1.86
NUP85	YJR042W	HEM15	P16622	393 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	ILV6	P25605	309 aa	Known RBP	3.44	□□□□□ -1.86
NUP85	YJR042W	DBP7	P36120	742 aa	Known RBP	3.44	□□□□□ -1.86
NUP85	YJR042W	SUL1	P38359	859 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	ERV46	P39727	415 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	FRT2	P39734	528 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	SIM1	P40472	476 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	SNL1	P40548	159 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	ILM1	P47155	203 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	YJR154W	P47181	346 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	MKC7	P53379	596 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	MPS1	P54199	764 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	OST6	Q03723	332 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	SNU56	Q03782	492 aa	Known RBP	3.44	□□□□□ -1.86
NUP85	YJR042W	YDR132C	Q03900	495 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	ASA1	Q06822	443 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	YRA1	Q12159	226 aa	Known RBP	3.44	□□□□□ -1.86
NUP85	YJR042W	NCA2	Q12374	616 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	YPR1	Q12458	312 aa		3.44	□□□□□ -1.86
NUP85	YJR042W	YLR462W	O13556	202 aa		3.43	□□□□□ -1.86
NUP85	YJR042W	MAS2	P11914	482 aa		3.43	□□□□□ -1.86
NUP85	YJR042W	YMR31	P19955	123 aa		3.43	□□□□□ -1.86
NUP85	YJR042W	TYR1	P20049	452 aa		3.43	□□□□□ -1.86
NUP85	YJR042W	FUN19	P28003	413 aa	Predicted RBP	3.43	□□□□□ -1.86
NUP85	YJR042W	EHD3	P28817	500 aa		3.43	□□□□□ -1.86
NUP85	YJR042W	TPS2	P31688	896 aa	Known RBP	3.43	□□□□□ -1.86
NUP85	YJR042W	RAD5	P32849	1169 aa	Predicted RBP	3.43	□□□□□ -1.86
NUP85	YJR042W	YHL049C	P38722	271 aa		3.43	□□□□□ -1.86
NUP85	YJR042W	SEC72	P39742	193 aa	Known RBP	3.43	□□□□□ -1.86
NUP85	YJR042W	YEL075C	P39972	122 aa		3.43	□□□□□ -1.86
NUP85	YJR042W	YER079W	P40052	210 aa	Known RBP	3.43	□□□□□ -1.86
NUP85	YJR042W	YER189W	P40104	122 aa		3.43	□□□□□ -1.86

Retrieved 100 of 5,963 RNA–protein pairs in 88.7 ms