RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 MTMR4Q9NYA4 1195 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 FAM53CQ9NYF3 392 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 PKD2L1Q9P0L9 805 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 RAB21Q9UL25 225 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 RGPD2P0DJD1 1756 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 CHD2O14647 1828 aaKnown RBP11.25□□□□□ -0.61
LIG1-220ENST00000601091 WTIPA6NIX2 430 aaPredicted RBP11.25□□□□□ -0.61
LIG1-220ENST00000601091 USP17L15C9J2P7 530 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 USP17L13C9JLJ4 530 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 USP17L11C9JVI0 530 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 USP17L18D6R9N7 530 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 USP17L22D6RA61 530 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 USP17L17D6RBQ6 530 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 USP17L19D6RCP7 530 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 USP17L20D6RJB6 530 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 SPOPO43791 374 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 PFDN1O60925 122 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 FERP16591 822 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 USP17L24Q0WX57 530 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 KCNH2Q12809 1159 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 BNIP1Q12981 228 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 PDXDC1Q6P996 788 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 USP17L6PQ6QN14 398 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 C3orf67Q6ZVT6 689 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 OTUD6AQ7L8S5 288 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 TXNRD3Q86VQ6 643 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 IWS1Q96ST2 819 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 EPAS1Q99814 870 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 LRRC1Q9BTT6 524 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 NFU1Q9UMS0 254 aa11.25□□□□□ -0.61
LIG1-220ENST00000601091 SSU72P8A0A1W2PR75 194 aa11.24□□□□□ -0.61
LIG1-220ENST00000601091 PMS1P54277 932 aaKnown RBP11.24□□□□□ -0.61
LIG1-220ENST00000601091 GPSM2P81274 684 aa11.24□□□□□ -0.61
LIG1-220ENST00000601091 ZBTB17Q13105 803 aa11.24□□□□□ -0.61
LIG1-220ENST00000601091 NNTQ13423 1086 aa11.24□□□□□ -0.61
LIG1-220ENST00000601091 NFIXQ14938 502 aa11.24□□□□□ -0.61
LIG1-220ENST00000601091 ADGRF4Q8IZF3 695 aa11.24□□□□□ -0.61
LIG1-220ENST00000601091 CABS1Q96KC9 395 aa11.24□□□□□ -0.61
LIG1-220ENST00000601091 LACRTQ9GZZ8 138 aa11.24□□□□□ -0.61
LIG1-220ENST00000601091 PPANQ9NQ55 473 aaKnown RBP11.24□□□□□ -0.61
LIG1-220ENST00000601091 ARIH1Q9Y4X5 557 aaPredicted RBP11.24□□□□□ -0.61
LIG1-220ENST00000601091 ESYT2A0FGR8 921 aa11.24□□□□□ -0.61
LIG1-220ENST00000601091 USP17L10C9JJH3 530 aa11.24□□□□□ -0.61
LIG1-220ENST00000601091 PGRMC1O00264 195 aaKnown RBP11.24□□□□□ -0.61
LIG1-220ENST00000601091 PPEF1O14829 653 aaPredicted RBP11.24□□□□□ -0.61
LIG1-220ENST00000601091 NCK2O43639 380 aa11.24□□□□□ -0.61
LIG1-220ENST00000601091 FIGNQ5HY92 759 aa11.24□□□□□ -0.61
LIG1-220ENST00000601091 BTN2A1Q7KYR7 527 aa11.24□□□□□ -0.61
LIG1-220ENST00000601091 CCDC25Q86WR0 208 aa11.24□□□□□ -0.61
LIG1-220ENST00000601091 SNRNP27Q8WVK2 155 aaKnown RBP11.24□□□□□ -0.61
LIG1-220ENST00000601091 NSRP1Q9H0G5 558 aaKnown RBP11.24□□□□□ -0.61
LIG1-220ENST00000601091 SH2D4AQ9H788 454 aa11.24□□□□□ -0.61
LIG1-220ENST00000601091 IL17RBQ9NRM6 502 aa11.24□□□□□ -0.61
LIG1-220ENST00000601091 SMARCAL1Q9NZC9 954 aa11.24□□□□□ -0.61
LIG1-220ENST00000601091 TMA7Q9Y2S6 64 aaKnown RBP11.24□□□□□ -0.61
LIG1-220ENST00000601091 ATP6V0A2Q9Y487 856 aa11.24□□□□□ -0.61
LIG1-220ENST00000601091 TNS2Q63HR2 1409 aa11.24□□□□□ -0.61
LIG1-220ENST00000601091 KIF13AQ9H1H9 1805 aa11.24□□□□□ -0.61
LIG1-220ENST00000601091 FLT1P17948 1338 aa11.24□□□□□ -0.61
LIG1-220ENST00000601091 AKR1B1P15121 316 aa11.24□□□□□ -0.61
LIG1-220ENST00000601091 VEGFAP15692 232 aaPredicted RBP11.24□□□□□ -0.61
LIG1-220ENST00000601091 CORO7P57737 925 aa11.24□□□□□ -0.61
LIG1-220ENST00000601091 PPP1R7Q15435 360 aa11.24□□□□□ -0.61
LIG1-220ENST00000601091 ABCB5Q2M3G0 1257 aa11.24□□□□□ -0.61
LIG1-220ENST00000601091 NAALADL2Q58DX5 795 aa11.24□□□□□ -0.61
LIG1-220ENST00000601091 PAPD7Q5XG87 772 aaKnown RBP11.24□□□□□ -0.61
LIG1-220ENST00000601091 SPATS2Q86XZ4 545 aaKnown RBP11.24□□□□□ -0.61
LIG1-220ENST00000601091 POTEB3A0JP26 581 aa11.23□□□□□ -0.61
LIG1-220ENST00000601091 POTECB2RU33 542 aa11.23□□□□□ -0.61
LIG1-220ENST00000601091 CLIC2O15247 247 aa11.23□□□□□ -0.61
LIG1-220ENST00000601091 GAP43P17677 238 aa11.23□□□□□ -0.61
LIG1-220ENST00000601091 PSMC2P35998 433 aaKnown RBP11.23□□□□□ -0.61
LIG1-220ENST00000601091 ARPC4P59998 168 aa11.23□□□□□ -0.61
LIG1-220ENST00000601091 TMED1Q13445 227 aa11.23□□□□□ -0.61
LIG1-220ENST00000601091 POTEBQ6S5H4 581 aa11.23□□□□□ -0.61
LIG1-220ENST00000601091 FAM186BQ8IYM0 893 aa11.23□□□□□ -0.61
LIG1-220ENST00000601091 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.23□□□□□ -0.61
LIG1-220ENST00000601091 CHURC1Q8WUH1 139 aa11.23□□□□□ -0.61
LIG1-220ENST00000601091 ERP27Q96DN0 273 aa11.23□□□□□ -0.61
LIG1-220ENST00000601091 RPAP3Q9H6T3 665 aaPredicted RBP11.23□□□□□ -0.61
LIG1-220ENST00000601091 DNAAF2Q9NVR5 837 aaKnown RBP11.23□□□□□ -0.61
LIG1-220ENST00000601091 PI4KBQ9UBF8 816 aa11.23□□□□□ -0.61
LIG1-220ENST00000601091 PRPF6O94906 941 aaKnown RBP11.23□□□□□ -0.61
LIG1-220ENST00000601091 PDHBP11177 359 aa11.23□□□□□ -0.61
LIG1-220ENST00000601091 FXR2P51116 673 aaKnown RBP eCLIP11.23□□□□□ -0.611e-6■■■■□ 25.2
LIG1-220ENST00000601091 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.23□□□□□ -0.61
LIG1-220ENST00000601091 CCDC77Q9BR77 488 aa11.23□□□□□ -0.61
LIG1-220ENST00000601091 BHMT2Q9H2M3 363 aa11.23□□□□□ -0.61
LIG1-220ENST00000601091 DUSP10Q9Y6W6 482 aa11.23□□□□□ -0.61
LIG1-220ENST00000601091 GPR75-ASB3A0A0A6YYF3 556 aa11.23□□□□□ -0.61
LIG1-220ENST00000601091 WNT7AO00755 349 aa11.23□□□□□ -0.61
LIG1-220ENST00000601091 AP3B2Q13367 1082 aa11.23□□□□□ -0.61
LIG1-220ENST00000601091 ZYXQ15942 572 aaKnown RBP11.23□□□□□ -0.61
LIG1-220ENST00000601091 RCSD1Q6JBY9 416 aa11.23□□□□□ -0.61
LIG1-220ENST00000601091 CROCCP2Q86T23 111 aa11.23□□□□□ -0.61
LIG1-220ENST00000601091 CERKQ8TCT0 537 aa11.23□□□□□ -0.61
LIG1-220ENST00000601091 MXD3Q9BW11 206 aa11.23□□□□□ -0.61
LIG1-220ENST00000601091 DPH5Q9H2P9 285 aa11.23□□□□□ -0.61
LIG1-220ENST00000601091 GCNT4Q9P109 453 aa11.23□□□□□ -0.61
LIG1-220ENST00000601091 LARSQ9P2J5 1176 aaKnown RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 192.2 ms