RNA–Protein interactions for RNA: ENST00000474539.5

CCNL1-215, Transcript of cyclin L1, human

TSL 1 (best)

Gene CCNL1, Length 4,799 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCNL1-215	ENST00000474539	NCAM2	O15394	837 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	TTI1	O43156	1089 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	RNASEH1	O60930	286 aa	Known RBP	4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	ZNF202	O95125	648 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	CALR	P27797	417 aa	Known RBP	4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	DYNLL1	P63167	89 aa	Known RBP	4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	MAP2K5	Q13163	448 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	PPIG	Q13427	754 aa	Known RBP eCLIP	4.99	□□□□□ -1.61	3e-7	■□□□□ 10.2
CCNL1-215	ENST00000474539	AAK1	Q2M2I8	961 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	CEP55	Q53EZ4	464 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	ITPRIPL1	Q6GPH6	555 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	SESTD1	Q86VW0	696 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	SGMS1	Q86VZ5	419 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	SPICE1	Q8N0Z3	855 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	TRIM58	Q8NG06	486 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	FAM163A	Q96GL9	167 aa	Predicted RBP	4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	UROC1	Q96N76	676 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	SLC45A1	Q9Y2W3	748 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	LTBP3	Q9NS15	1303 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	SLC9A3R1	O14745	358 aa	Predicted RBP	4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	TMCC1	O94876	653 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	IGHD	P01880	384 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	H2AFZ	P0C0S5	128 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	TNNT1	P13805	278 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	PDIA3	P30101	505 aa	Known RBP	4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	IFNA8	P32881	189 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	MAGEA1	P43355	309 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	ALDH7A1	P49419	539 aa	Known RBP	4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	CYP2J2	P51589	502 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	EPHB1	P54762	984 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	ARHGAP4	P98171	946 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	GTF2H3	Q13889	308 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	BYSL	Q13895	437 aa	Known RBP	4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	CDC42EP5	Q6NZY7	148 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	C4orf22	Q6V702	233 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	H2AFV	Q71UI9	128 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	ZNF771	Q7L3S4	317 aa	Predicted RBP	4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	ARHGAP24	Q8N264	748 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	PRIMPOL	Q96LW4	560 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	ASNSD1	Q9NWL6	643 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	BARHL2	Q9NY43	387 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	MTMR4	Q9NYA4	1195 aa		4.99	□□□□□ -1.61
CCNL1-215	ENST00000474539	POLRMT	O00411	1230 aa	Known RBP	4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	PLA2G4B	P0C869	781 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	CPB1	P15086	417 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	PAPOLA	P51003	745 aa	Known RBP	4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	GNG11	P61952	73 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	PRKCQ	Q04759	706 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	ZNF543	Q08ER8	600 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	SLC39A14	Q15043	492 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	RPS6KA1	Q15418	735 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	DIXDC1	Q155Q3	683 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	PROSER3	Q2NL68	480 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	CCDC184	Q52MB2	194 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	MAP3K21	Q5TCX8	1036 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	SPATA1	Q5VX52	437 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	SPATA2L	Q8IUW3	424 aa	Predicted RBP	4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	VPS52	Q8N1B4	723 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	AOPEP	Q8N6M6	819 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	IGSF22	Q8N9C0	903 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	XXYLT1	Q8NBI6	393 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	PPFIBP2	Q8ND30	876 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	IDI2	Q9BXS1	227 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	FAM49A	Q9H0Q0	323 aa	Predicted RBP	4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	MYO1F	O00160	1098 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	P4HA2	O15460	535 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	GFPT2	O94808	682 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	SRGAP2C	P0DJJ0	459 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	CYP2B6	P20813	491 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	KRT33B	Q14525	404 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	NFE2	Q16621	373 aa	Predicted RBP	4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	CFAP221	Q4G0U5	840 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	ANO6	Q4KMQ2	910 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	GNAS	Q5JWF2	1037 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	C20orf194	Q5TEA3	1177 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	TSHZ3	Q63HK5	1081 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	DNAJC24	Q6P3W2	148 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	CCDC149	Q6ZUS6	474 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	UNC13D	Q70J99	1090 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	DEFB132	Q7Z7B7	95 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	RHOT2	Q8IXI1	618 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	IFT20	Q8IY31	132 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	MED15	Q96RN5	788 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	APBA2	Q99767	749 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	PIH1D3	Q9NQM4	214 aa	Known RBP	4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	MRGBP	Q9NV56	204 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	MYO1A	Q9UBC5	1043 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	POTEB3	A0JP26	581 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	SLC16A3	O15427	465 aa	Known RBP	4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	DYNC1LI2	O43237	492 aa	Predicted RBP	4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	PRPSAP2	O60256	369 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	RHOBTB3	O94955	611 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	EYA4	O95677	639 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	ODC1	P11926	461 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	GJC1	P36383	396 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	ZNF135	P52742	658 aa	Predicted RBP	4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	PHEX	P78562	749 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	TFAM	Q00059	246 aa	Known RBP	4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	SMARCB1	Q12824	385 aa		4.98	□□□□□ -1.61
CCNL1-215	ENST00000474539	DUOXA2	Q1HG44	320 aa		4.98	□□□□□ -1.61

Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms