RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 OSBPL7Q9BZF2 842 aa18.25■□□□□ 0.51
TRIM28-206ENST00000595974 NRBP2Q9NSY0 501 aa18.25■□□□□ 0.51
TRIM28-206ENST00000595974 VAV3Q9UKW4 847 aa18.25■□□□□ 0.51
TRIM28-206ENST00000595974 SQORQ9Y6N5 450 aa18.25■□□□□ 0.51
TRIM28-206ENST00000595974 TTC3P53804 2025 aa18.24■□□□□ 0.51
TRIM28-206ENST00000595974 MAGEB2O15479 319 aa18.24■□□□□ 0.51
TRIM28-206ENST00000595974 MARCH6O60337 910 aa18.24■□□□□ 0.51
TRIM28-206ENST00000595974 AMHP03971 560 aa18.24■□□□□ 0.51
TRIM28-206ENST00000595974 GUCY1B3Q02153 619 aa18.24■□□□□ 0.51
TRIM28-206ENST00000595974 LPIN1Q14693 890 aa18.24■□□□□ 0.51
TRIM28-206ENST00000595974 USP38Q8NB14 1042 aa18.24■□□□□ 0.51
TRIM28-206ENST00000595974 FBXO18Q8NFZ0 1043 aa18.24■□□□□ 0.51
TRIM28-206ENST00000595974 HAS1Q92839 578 aa18.24■□□□□ 0.51
TRIM28-206ENST00000595974 KIF3AQ9Y496 699 aa18.24■□□□□ 0.51
TRIM28-206ENST00000595974 ARID2Q68CP9 1835 aa18.23■□□□□ 0.51
TRIM28-206ENST00000595974 TLL1O43897 1013 aa18.23■□□□□ 0.51
TRIM28-206ENST00000595974 GJB5O95377 273 aa18.23■□□□□ 0.51
TRIM28-206ENST00000595974 BAG4O95429 457 aaKnown RBP18.23■□□□□ 0.51
TRIM28-206ENST00000595974 CA3P07451 260 aa18.23■□□□□ 0.51
TRIM28-206ENST00000595974 MYOGP15173 224 aa18.23■□□□□ 0.51
TRIM28-206ENST00000595974 GRIN2CQ14957 1233 aa18.23■□□□□ 0.51
TRIM28-206ENST00000595974 XKR3Q5GH77 459 aa18.23■□□□□ 0.51
TRIM28-206ENST00000595974 TRMT1LQ7Z2T5 733 aaKnown RBP18.23■□□□□ 0.51
TRIM28-206ENST00000595974 MYLIPQ8WY64 445 aa18.23■□□□□ 0.51
TRIM28-206ENST00000595974 ZBED2Q9BTP6 218 aa18.23■□□□□ 0.51
TRIM28-206ENST00000595974 CELF4Q9BZC1 486 aaKnown RBP18.23■□□□□ 0.51
TRIM28-206ENST00000595974 FOXP1Q9H334 677 aaPredicted RBP18.23■□□□□ 0.51
TRIM28-206ENST00000595974 EML1O00423 815 aa18.22■□□□□ 0.51
TRIM28-206ENST00000595974 NEMFO60524 1076 aa18.22■□□□□ 0.51
TRIM28-206ENST00000595974 DKC1O60832 514 aaKnown RBP eCLIP18.22■□□□□ 0.51
TRIM28-206ENST00000595974 CD2BP2O95400 341 aaKnown RBP18.22■□□□□ 0.51
TRIM28-206ENST00000595974 PSMC5P62195 406 aa18.22■□□□□ 0.51
TRIM28-206ENST00000595974 TMEM62Q0P6H9 643 aa18.22■□□□□ 0.51
TRIM28-206ENST00000595974 CALCRLQ16602 461 aa18.22■□□□□ 0.51
TRIM28-206ENST00000595974 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.22■□□□□ 0.512e-9■□□□□ 9.3
TRIM28-206ENST00000595974 KIAA0319LQ8IZA0 1049 aa18.22■□□□□ 0.51
TRIM28-206ENST00000595974 MYOCDQ8IZQ8 938 aa18.22■□□□□ 0.51
TRIM28-206ENST00000595974 TMX3Q96JJ7 454 aa18.22■□□□□ 0.51
TRIM28-206ENST00000595974 COL4A6Q14031 1691 aa18.22■□□□□ 0.51
TRIM28-206ENST00000595974 FOSL2P15408 326 aa18.21■□□□□ 0.51
TRIM28-206ENST00000595974 SPIRE1Q08AE8 756 aa18.21■□□□□ 0.51
TRIM28-206ENST00000595974 GNL2Q13823 731 aaKnown RBP18.21■□□□□ 0.51
TRIM28-206ENST00000595974 FAM43BQ6ZT52 329 aaPredicted RBP18.21■□□□□ 0.51
TRIM28-206ENST00000595974 METTL13Q8N6R0 699 aa18.21■□□□□ 0.51
TRIM28-206ENST00000595974 BANK1Q8NDB2 785 aa18.21■□□□□ 0.51
TRIM28-206ENST00000595974 RAD9AQ99638 391 aa18.21■□□□□ 0.51
TRIM28-206ENST00000595974 NIFKQ9BYG3 293 aaKnown RBP18.21■□□□□ 0.51
TRIM28-206ENST00000595974 BACH2Q9BYV9 841 aa18.21■□□□□ 0.51
TRIM28-206ENST00000595974 SEPT9Q9UHD8 586 aaPredicted RBP18.21■□□□□ 0.51
TRIM28-206ENST00000595974 NLRC5Q86WI3 1866 aa18.2■□□□□ 0.5
TRIM28-206ENST00000595974 EYSQ5T1H1 3165 aa18.2■□□□□ 0.5
TRIM28-206ENST00000595974 COL4A4P53420 1690 aaPredicted RBP18.2■□□□□ 0.5
TRIM28-206ENST00000595974 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.2■□□□□ 0.5
TRIM28-206ENST00000595974 TMOD1P28289 359 aa18.2■□□□□ 0.5
TRIM28-206ENST00000595974 CD52P31358 61 aa18.2■□□□□ 0.5
TRIM28-206ENST00000595974 QARSP47897 775 aaKnown RBP18.2■□□□□ 0.5
TRIM28-206ENST00000595974 TBC1D8BQ0IIM8 1120 aa18.2■□□□□ 0.5
TRIM28-206ENST00000595974 ORC2Q13416 577 aaPredicted RBP18.2■□□□□ 0.5
TRIM28-206ENST00000595974 EPHA7Q15375 998 aa18.2■□□□□ 0.5
TRIM28-206ENST00000595974 TARBP2Q15633 366 aaKnown RBP18.2■□□□□ 0.5
TRIM28-206ENST00000595974 TMCO2Q7Z6W1 182 aaPredicted RBP18.2■□□□□ 0.5
TRIM28-206ENST00000595974 ZNF710Q8N1W2 664 aa18.2■□□□□ 0.5
TRIM28-206ENST00000595974 LINC01465Q8N7H1 131 aa18.2■□□□□ 0.5
TRIM28-206ENST00000595974 MAP7D2Q96T17 732 aa18.2■□□□□ 0.5
TRIM28-206ENST00000595974 GAS2L1Q99501 681 aaPredicted RBP18.2■□□□□ 0.5
TRIM28-206ENST00000595974 FTHL17Q9BXU8 183 aa18.2■□□□□ 0.5
TRIM28-206ENST00000595974 PRDM12Q9H4Q4 367 aa18.2■□□□□ 0.5
TRIM28-206ENST00000595974 AGO3Q9H9G7 860 aaKnown RBP18.2■□□□□ 0.5
TRIM28-206ENST00000595974 RBAK-RBAKDNI3L0D1 243 aa18.19■□□□□ 0.5
TRIM28-206ENST00000595974 WNT7AO00755 349 aa18.19■□□□□ 0.5
TRIM28-206ENST00000595974 STBD1O95210 358 aa18.19■□□□□ 0.5
TRIM28-206ENST00000595974 P4HBP07237 508 aaKnown RBP18.19■□□□□ 0.5
TRIM28-206ENST00000595974 CLCN3P51790 818 aa18.19■□□□□ 0.5
TRIM28-206ENST00000595974 TAP1Q03518 808 aa18.19■□□□□ 0.5
TRIM28-206ENST00000595974 PAK2Q13177 524 aa18.19■□□□□ 0.5
TRIM28-206ENST00000595974 RALGAPA2Q2PPJ7 1873 aa18.19■□□□□ 0.5
TRIM28-206ENST00000595974 NCAPH2Q6IBW4 605 aa18.19■□□□□ 0.5
TRIM28-206ENST00000595974 EFCAB12Q6NXP0 572 aa18.19■□□□□ 0.5
TRIM28-206ENST00000595974 NOSTRINQ8IVI9 506 aa18.19■□□□□ 0.5
TRIM28-206ENST00000595974 TOP1MTQ969P6 601 aa18.19■□□□□ 0.5
TRIM28-206ENST00000595974 PCDHA12Q9UN75 941 aa18.19■□□□□ 0.5
TRIM28-206ENST00000595974 INSL6Q9Y581 213 aa18.19■□□□□ 0.5
TRIM28-206ENST00000595974 TRANK1O15050 2925 aa18.19■□□□□ 0.5
TRIM28-206ENST00000595974 LCHNA4D1U4 455 aa18.18■□□□□ 0.5
TRIM28-206ENST00000595974 VTNP04004 478 aa18.18■□□□□ 0.5
TRIM28-206ENST00000595974 TRAPPC10P48553 1259 aa18.18■□□□□ 0.5
TRIM28-206ENST00000595974 HTRA4P83105 476 aaPredicted RBP18.18■□□□□ 0.5
TRIM28-206ENST00000595974 MTERF2Q49AM1 385 aa18.18■□□□□ 0.5
TRIM28-206ENST00000595974 ODR4Q5SWX8 454 aa18.18■□□□□ 0.5
TRIM28-206ENST00000595974 FAM117BQ6P1L5 589 aa18.18■□□□□ 0.5
TRIM28-206ENST00000595974 LRRC71Q8N4P6 559 aa18.18■□□□□ 0.5
TRIM28-206ENST00000595974 MTMR9Q96QG7 549 aa18.18■□□□□ 0.5
TRIM28-206ENST00000595974 LXNQ9BS40 222 aa18.18■□□□□ 0.5
TRIM28-206ENST00000595974 TTC12Q9H892 705 aaPredicted RBP18.18■□□□□ 0.5
TRIM28-206ENST00000595974 PADI3Q9ULW8 664 aa18.18■□□□□ 0.5
TRIM28-206ENST00000595974 AKT3Q9Y243 479 aa18.18■□□□□ 0.5
TRIM28-206ENST00000595974 GINS2Q9Y248 185 aa18.18■□□□□ 0.5
TRIM28-206ENST00000595974 PPME1Q9Y570 386 aa18.18■□□□□ 0.5
TRIM28-206ENST00000595974 GTF3C3Q9Y5Q9 886 aa18.18■□□□□ 0.5
TRIM28-206ENST00000595974 DDX11L8A8MPP1 907 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms