RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	JPH2	Q9BR39	696 aa	Predicted RBP	13.95	□□□□□ -0.18
ABCD4-223	ENST00000555904	NIFK	Q9BYG3	293 aa	Known RBP	13.95	□□□□□ -0.18
ABCD4-223	ENST00000555904	SEZ6L	Q9BYH1	1024 aa		13.95	□□□□□ -0.18
ABCD4-223	ENST00000555904	LRRC27	Q9C0I9	530 aa		13.95	□□□□□ -0.18
ABCD4-223	ENST00000555904	RNPEP	Q9H4A4	650 aa		13.95	□□□□□ -0.18
ABCD4-223	ENST00000555904	GOLPH3L	Q9H4A5	285 aa		13.95	□□□□□ -0.18
ABCD4-223	ENST00000555904	CYP26B1	Q9NR63	512 aa		13.95	□□□□□ -0.18
ABCD4-223	ENST00000555904	C17orf102	A2RUQ5	167 aa		13.94	□□□□□ -0.18
ABCD4-223	ENST00000555904		E9PMD0	336 aa		13.94	□□□□□ -0.18
ABCD4-223	ENST00000555904	HAS3	O00219	553 aa		13.94	□□□□□ -0.18
ABCD4-223	ENST00000555904	ZNF202	O95125	648 aa		13.94	□□□□□ -0.18
ABCD4-223	ENST00000555904	KRT18	P05783	430 aa	Known RBP	13.94	□□□□□ -0.18
ABCD4-223	ENST00000555904	PLA2G4B	P0C869	781 aa		13.94	□□□□□ -0.18
ABCD4-223	ENST00000555904	INSRR	P14616	1297 aa		13.94	□□□□□ -0.18
ABCD4-223	ENST00000555904	ATP4A	P20648	1035 aa		13.94	□□□□□ -0.18
ABCD4-223	ENST00000555904	RFC5	P40937	340 aa		13.94	□□□□□ -0.18
ABCD4-223	ENST00000555904	RARRES1	P49788	294 aa		13.94	□□□□□ -0.18
ABCD4-223	ENST00000555904	PSMC6	P62333	389 aa		13.94	□□□□□ -0.18
ABCD4-223	ENST00000555904	IGBP1	P78318	339 aa		13.94	□□□□□ -0.18
ABCD4-223	ENST00000555904	GRIK4	Q16099	956 aa		13.94	□□□□□ -0.18
ABCD4-223	ENST00000555904	NBPF20	Q3BBV1	942 aa		13.94	□□□□□ -0.18
ABCD4-223	ENST00000555904	KANK3	Q6NY19	840 aa		13.94	□□□□□ -0.18
ABCD4-223	ENST00000555904	NFRKB	Q6P4R8	1299 aa		13.94	□□□□□ -0.18
ABCD4-223	ENST00000555904	SV2B	Q7L1I2	683 aa		13.94	□□□□□ -0.18
ABCD4-223	ENST00000555904	TNS4	Q8IZW8	715 aa		13.94	□□□□□ -0.18
ABCD4-223	ENST00000555904	RETREG2	Q8NC44	543 aa		13.94	□□□□□ -0.18
ABCD4-223	ENST00000555904	CNNM3	Q8NE01	707 aa		13.94	□□□□□ -0.18
ABCD4-223	ENST00000555904	SENP6	Q9GZR1	1112 aa	Predicted RBP	13.94	□□□□□ -0.18
ABCD4-223	ENST00000555904	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.94	□□□□□ -0.18
ABCD4-223	ENST00000555904	NOD1	Q9Y239	953 aa		13.94	□□□□□ -0.18
ABCD4-223	ENST00000555904	MROH7	Q68CQ1	1323 aa		13.93	□□□□□ -0.18
ABCD4-223	ENST00000555904		A0A087X0B3	334 aa		13.93	□□□□□ -0.18
ABCD4-223	ENST00000555904	TMEM150B	A6NC51	233 aa		13.93	□□□□□ -0.18
ABCD4-223	ENST00000555904	DGAT1	O75907	488 aa		13.93	□□□□□ -0.18
ABCD4-223	ENST00000555904	SLFN14	P0C7P3	912 aa		13.93	□□□□□ -0.18
ABCD4-223	ENST00000555904	PTPN11	Q06124	597 aa	Predicted RBP	13.93	□□□□□ -0.18
ABCD4-223	ENST00000555904	DHX8	Q14562	1220 aa	Known RBP	13.93	□□□□□ -0.18
ABCD4-223	ENST00000555904	E2F4	Q16254	413 aa		13.93	□□□□□ -0.18
ABCD4-223	ENST00000555904	NECAB2	Q7Z6G3	386 aa		13.93	□□□□□ -0.18
ABCD4-223	ENST00000555904	FMR1NB	Q8N0W7	255 aa	Predicted RBP	13.93	□□□□□ -0.18
ABCD4-223	ENST00000555904	SYT2	Q8N9I0	419 aa	Predicted RBP	13.93	□□□□□ -0.18
ABCD4-223	ENST00000555904	ABHD8	Q96I13	439 aa		13.93	□□□□□ -0.18
ABCD4-223	ENST00000555904	TNMD	Q9H2S6	317 aa		13.93	□□□□□ -0.18
ABCD4-223	ENST00000555904	C11orf49	Q9H6J7	331 aa		13.93	□□□□□ -0.18
ABCD4-223	ENST00000555904	KCND2	Q9NZV8	630 aa		13.93	□□□□□ -0.18
ABCD4-223	ENST00000555904	TUBE1	Q9UJT0	475 aa		13.93	□□□□□ -0.18
ABCD4-223	ENST00000555904	TCHH	Q07283	1943 aa		13.92	□□□□□ -0.18
ABCD4-223	ENST00000555904	ZBTB39	O15060	712 aa		13.92	□□□□□ -0.18
ABCD4-223	ENST00000555904	MAGEB2	O15479	319 aa		13.92	□□□□□ -0.18
ABCD4-223	ENST00000555904	GAS2	O43903	313 aa	Known RBP	13.92	□□□□□ -0.18
ABCD4-223	ENST00000555904	USO1	O60763	962 aa	Known RBP	13.92	□□□□□ -0.18
ABCD4-223	ENST00000555904	NR1I2	O75469	434 aa		13.92	□□□□□ -0.18
ABCD4-223	ENST00000555904	LIG1	P18858	919 aa		13.92	□□□□□ -0.18
ABCD4-223	ENST00000555904	TMOD1	P28289	359 aa		13.92	□□□□□ -0.18
ABCD4-223	ENST00000555904	DNM2	P50570	870 aa		13.92	□□□□□ -0.18
ABCD4-223	ENST00000555904	NPEPPS	P55786	919 aa		13.92	□□□□□ -0.18
ABCD4-223	ENST00000555904	MCM6	Q14566	821 aa		13.92	□□□□□ -0.18
ABCD4-223	ENST00000555904	NAALADL2	Q58DX5	795 aa		13.92	□□□□□ -0.18
ABCD4-223	ENST00000555904	PADI6	Q6TGC4	694 aa		13.92	□□□□□ -0.18
ABCD4-223	ENST00000555904	KRBA2	Q6ZNG9	492 aa		13.92	□□□□□ -0.18
ABCD4-223	ENST00000555904	KCNK18	Q7Z418	384 aa		13.92	□□□□□ -0.18
ABCD4-223	ENST00000555904	SESTD1	Q86VW0	696 aa		13.92	□□□□□ -0.18
ABCD4-223	ENST00000555904	GPBP1	Q86WP2	473 aa		13.92	□□□□□ -0.18
ABCD4-223	ENST00000555904	MCPH1	Q8NEM0	835 aa		13.92	□□□□□ -0.18
ABCD4-223	ENST00000555904	LMBR1	Q8WVP7	490 aa		13.92	□□□□□ -0.18
ABCD4-223	ENST00000555904	SH2D3A	Q9BRG2	576 aa		13.92	□□□□□ -0.18
ABCD4-223	ENST00000555904	TIPIN	Q9BVW5	301 aa		13.92	□□□□□ -0.18
ABCD4-223	ENST00000555904	ATP6V0A4	Q9HBG4	840 aa		13.92	□□□□□ -0.18
ABCD4-223	ENST00000555904	SETD4	Q9NVD3	440 aa		13.92	□□□□□ -0.18
ABCD4-223	ENST00000555904	DACT1	Q9NYF0	836 aa		13.92	□□□□□ -0.18
ABCD4-223	ENST00000555904	HDAC6	Q9UBN7	1215 aa		13.92	□□□□□ -0.18
ABCD4-223	ENST00000555904	GTF2IRD1	Q9UHL9	959 aa		13.92	□□□□□ -0.18
ABCD4-223	ENST00000555904		A0A087WWV3	80 aa		13.91	□□□□□ -0.18
ABCD4-223	ENST00000555904	ACTN4	O43707	911 aa	Known RBP	13.91	□□□□□ -0.18
ABCD4-223	ENST00000555904	STBD1	O95210	358 aa		13.91	□□□□□ -0.18
ABCD4-223	ENST00000555904	RPLP2	P05387	115 aa	Known RBP	13.91	□□□□□ -0.18
ABCD4-223	ENST00000555904	SLC12A3	P55017	1021 aa		13.91	□□□□□ -0.18
ABCD4-223	ENST00000555904	SNW1	Q13573	536 aa	Known RBP	13.91	□□□□□ -0.18
ABCD4-223	ENST00000555904	EMC2	Q15006	297 aa		13.91	□□□□□ -0.18
ABCD4-223	ENST00000555904	LONRF3	Q496Y0	759 aa		13.91	□□□□□ -0.18
ABCD4-223	ENST00000555904	METTL13	Q8N6R0	699 aa		13.91	□□□□□ -0.18
ABCD4-223	ENST00000555904	TRAPPC12	Q8WVT3	735 aa		13.91	□□□□□ -0.18
ABCD4-223	ENST00000555904	PAWR	Q96IZ0	340 aa	Known RBP	13.91	□□□□□ -0.18
ABCD4-223	ENST00000555904	TIGD1	Q96MW7	591 aa		13.91	□□□□□ -0.18
ABCD4-223	ENST00000555904	MTR	Q99707	1265 aa		13.91	□□□□□ -0.18
ABCD4-223	ENST00000555904	BLOC1S4	Q9NUP1	217 aa		13.91	□□□□□ -0.18
ABCD4-223	ENST00000555904	SERTAD1	Q9UHV2	236 aa		13.91	□□□□□ -0.18
ABCD4-223	ENST00000555904	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.9	□□□□□ -0.18
ABCD4-223	ENST00000555904	CCDC85C	A6NKD9	419 aa		13.9	□□□□□ -0.18
ABCD4-223	ENST00000555904	ZBTB42	B2RXF5	422 aa		13.9	□□□□□ -0.18
ABCD4-223	ENST00000555904	ARVCF	O00192	962 aa		13.9	□□□□□ -0.18
ABCD4-223	ENST00000555904	TLR3	O15455	904 aa	Known RBP	13.9	□□□□□ -0.18
ABCD4-223	ENST00000555904	TBCA	O75347	108 aa	Known RBP	13.9	□□□□□ -0.18
ABCD4-223	ENST00000555904	MAF	O75444	373 aa	Predicted RBP	13.9	□□□□□ -0.18
ABCD4-223	ENST00000555904	MYL1	P05976	194 aa		13.9	□□□□□ -0.18
ABCD4-223	ENST00000555904	KLRC1	P26715	233 aa		13.9	□□□□□ -0.18
ABCD4-223	ENST00000555904	AFM	P43652	599 aa		13.9	□□□□□ -0.18
ABCD4-223	ENST00000555904	TARBP2	Q15633	366 aa	Known RBP	13.9	□□□□□ -0.18
ABCD4-223	ENST00000555904	PTGIS	Q16647	500 aa		13.9	□□□□□ -0.18
ABCD4-223	ENST00000555904	SKOR2	Q2VWA4	1001 aa	Predicted RBP	13.9	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms