RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 RINLQ6ZS11 566 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 TERB1Q8NA31 727 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 TUBGCP3Q96CW5 907 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 DSCC1Q9BVC3 393 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 ING2Q9H160 280 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 NLRC4Q9NPP4 1024 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 ANGEL1Q9UNK9 670 aaKnown RBP14.23□□□□□ -0.13
USP40-208ENST00000450966 PRDM15P57071 1507 aaPredicted RBP14.23□□□□□ -0.13
USP40-208ENST00000450966 LIN7AO14910 233 aaPredicted RBP14.23□□□□□ -0.13
USP40-208ENST00000450966 GRIN3BO60391 1043 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 RFX1P22670 979 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 TUBA4AP68366 448 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 CIAPIN1Q6FI81 312 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 OTUD6AQ7L8S5 288 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 DHX36Q9H2U1 1008 aaKnown RBP14.23□□□□□ -0.13
USP40-208ENST00000450966 A0A0G2JND7 137 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 B4E1Z4 1266 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 SH3BP5O60239 455 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 GSPT2Q8IYD1 628 aaKnown RBP14.23□□□□□ -0.13
USP40-208ENST00000450966 U2AF1L4Q8WU68 220 aaKnown RBP14.23□□□□□ -0.13
USP40-208ENST00000450966 ATP8A2Q9NTI2 1148 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 PLA2R1Q13018 1463 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 GRID2IPA4D2P6 1211 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 ZNF839A8K0R7 811 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 ZBTB24O43167 697 aaPredicted RBP14.23□□□□□ -0.13
USP40-208ENST00000450966 RHOBTB1O94844 696 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 PGM1P36871 562 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 RAB14P61106 215 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 BYSLQ13895 437 aaKnown RBP14.23□□□□□ -0.13
USP40-208ENST00000450966 KDM7AQ6ZMT4 941 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 NLRP9Q7RTR0 991 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 DBNDD2Q9BQY9 259 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 PNMA3Q9UL41 463 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 COPS2P61201 443 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 TIMM10P62072 90 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 DSG1Q02413 1049 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 ITIH4Q14624 930 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 C10orf76Q5T2E6 689 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 UBE2Q1Q7Z7E8 422 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 NT5C3AQ9H0P0 336 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 CCDC134Q9H6E4 229 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 EURLQ9NYK6 297 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 HEG1Q9ULI3 1381 aa14.23□□□□□ -0.13
USP40-208ENST00000450966 CDK12Q9NYV4 1490 aaPredicted RBP14.22□□□□□ -0.13
USP40-208ENST00000450966 H0Y626 953 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 GRIN1Q05586 938 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 EXOC8Q8IYI6 725 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 ZSWIM6Q9HCJ5 1215 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 PPARGC1AQ9UBK2 798 aaKnown RBP14.22□□□□□ -0.13
USP40-208ENST00000450966 RCOR1Q9UKL0 485 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 UBN2Q6ZU65 1347 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 BCRP11274 1271 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 GSPT1P15170 499 aaKnown RBP14.22□□□□□ -0.13
USP40-208ENST00000450966 MTTPP55157 894 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 GALNT17Q6IS24 598 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 DIS3L2Q8IYB7 885 aaKnown RBP14.22□□□□□ -0.13
USP40-208ENST00000450966 PARD3BQ8TEW8 1205 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 MAML1Q92585 1016 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 LSM14BQ9BX40 385 aaKnown RBP14.22□□□□□ -0.13
USP40-208ENST00000450966 STX18Q9P2W9 335 aaKnown RBP14.22□□□□□ -0.13
USP40-208ENST00000450966 LRWD1Q9UFC0 647 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 C2CD2Q9Y426 696 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 TAF5LO75529 589 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 ECEL1O95672 775 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 MYCLP12524 364 aaPredicted RBP14.22□□□□□ -0.13
USP40-208ENST00000450966 DCTN2Q13561 401 aaKnown RBP14.22□□□□□ -0.13
USP40-208ENST00000450966 TNIP2Q8NFZ5 429 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 OTUD7AQ8TE49 926 aaPredicted RBP14.22□□□□□ -0.13
USP40-208ENST00000450966 SLC26A7Q8TE54 656 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 XPO6Q96QU8 1125 aaKnown RBP14.22□□□□□ -0.13
USP40-208ENST00000450966 SPON1Q9HCB6 807 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 DMAP1Q9NPF5 467 aaPredicted RBP14.22□□□□□ -0.13
USP40-208ENST00000450966 SH3GLB1Q9Y371 365 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 IQGAP3Q86VI3 1631 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 STAT1P42224 750 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 CACNA2D1P54289 1103 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 NUP107P57740 925 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 CCZ1BP86790 482 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 CCZ1P86791 482 aaPredicted RBP14.22□□□□□ -0.13
USP40-208ENST00000450966 NONOQ15233 471 aaKnown RBP eCLIP14.22□□□□□ -0.13
USP40-208ENST00000450966 DNAL1Q4LDG9 190 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 KRT40Q6A162 431 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 HIPK4Q8NE63 616 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 IL17REQ8NFR9 667 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 TGFBRAP1Q8WUH2 860 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 DACH2Q96NX9 599 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 RIMBP3CA6NJZ7 1639 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 RIMBP3BA6NNM3 1639 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 RIMBP3Q9UFD9 1639 aa14.22□□□□□ -0.13
USP40-208ENST00000450966 CCNT1O60563 726 aaKnown RBP14.21□□□□□ -0.13
USP40-208ENST00000450966 MOCS3O95396 460 aa14.21□□□□□ -0.13
USP40-208ENST00000450966 DR1Q01658 176 aa14.21□□□□□ -0.13
USP40-208ENST00000450966 DDR1Q08345 913 aa14.21□□□□□ -0.13
USP40-208ENST00000450966 VPS72Q15906 364 aa14.21□□□□□ -0.13
USP40-208ENST00000450966 FAM47EQ6ZV65 393 aa14.21□□□□□ -0.13
USP40-208ENST00000450966 KRT82Q9NSB4 513 aa14.21□□□□□ -0.13
USP40-208ENST00000450966 RPS6KA5O75582 802 aa14.21□□□□□ -0.13
USP40-208ENST00000450966 HSPA13P48723 471 aa14.21□□□□□ -0.13
USP40-208ENST00000450966 ZBED6P86452 979 aa14.21□□□□□ -0.13
USP40-208ENST00000450966 FSCBQ5H9T9 825 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms