RNA–Protein interactions for RNA: YMR153W

NUP53, Transcript of FG-nucleoporin component of central core of nuclear pore complex (NPC), yeast

Gene NUP53, Length 1,428 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP53	YMR153W	BAR1	P12630	587 aa		7	□□□□□ -1.29
NUP53	YMR153W	ERD1	P16151	362 aa		7	□□□□□ -1.29
NUP53	YMR153W	MER1	P16523	270 aa		7	□□□□□ -1.29
NUP53	YMR153W	DEP1	P31385	405 aa		7	□□□□□ -1.29
NUP53	YMR153W	DGR2	P32330	852 aa		7	□□□□□ -1.29
NUP53	YMR153W	TOD6	P34219	525 aa		7	□□□□□ -1.29
NUP53	YMR153W	TEF4	P36008	412 aa	Known RBP	7	□□□□□ -1.29
NUP53	YMR153W	SNU114	P36048	1008 aa	Known RBP	7	□□□□□ -1.29
NUP53	YMR153W	ROT2	P38138	954 aa		7	□□□□□ -1.29
NUP53	YMR153W	HEK2	P38199	381 aa	Known RBP RIP-Chip data	7	□□□□□ -1.29	not detected
NUP53	YMR153W	APD1	P38281	316 aa		7	□□□□□ -1.29
NUP53	YMR153W	RCK1	P38622	512 aa		7	□□□□□ -1.29
NUP53	YMR153W	LEM3	P42838	414 aa		7	□□□□□ -1.29
NUP53	YMR153W	BPL1	P48445	690 aa	Predicted RBP	7	□□□□□ -1.29
NUP53	YMR153W	USE1	P53146	245 aa		7	□□□□□ -1.29
NUP53	YMR153W	COG2	P53271	262 aa		7	□□□□□ -1.29
NUP53	YMR153W	CUZ1	P53899	274 aa		7	□□□□□ -1.29
NUP53	YMR153W	NCE101	Q02820	53 aa		7	□□□□□ -1.29
NUP53	YMR153W	GIS1	Q03833	894 aa		7	□□□□□ -1.29
NUP53	YMR153W	RAD30	Q04049	632 aa		7	□□□□□ -1.29
NUP53	YMR153W	PAL1	Q05518	499 aa	Known RBP	7	□□□□□ -1.29
NUP53	YMR153W	YLR352W	Q06479	807 aa		7	□□□□□ -1.29
NUP53	YMR153W	DCI1	Q08558	271 aa		7	□□□□□ -1.29
NUP53	YMR153W	RPS21B	Q3E754	87 aa	Known RBP	7	□□□□□ -1.29
NUP53	YMR153W	MTR10	Q99189	972 aa		7	□□□□□ -1.29
NUP53	YMR153W	PUT2	P07275	575 aa		6.99	□□□□□ -1.29
NUP53	YMR153W	TOP3	P13099	656 aa		6.99	□□□□□ -1.29
NUP53	YMR153W	DMC1	P25453	334 aa		6.99	□□□□□ -1.29
NUP53	YMR153W	RAD51	P25454	400 aa		6.99	□□□□□ -1.29
NUP53	YMR153W	CSM1	P25651	190 aa		6.99	□□□□□ -1.29
NUP53	YMR153W	TPO5	P36029	618 aa		6.99	□□□□□ -1.29
NUP53	YMR153W	IST2	P38250	946 aa		6.99	□□□□□ -1.29
NUP53	YMR153W	ANS1	P38832	159 aa		6.99	□□□□□ -1.29
NUP53	YMR153W	MNN9	P39107	395 aa	Known RBP	6.99	□□□□□ -1.29
NUP53	YMR153W	DSS1	P39112	969 aa		6.99	□□□□□ -1.29
NUP53	YMR153W	SUB1	P54000	292 aa	Known RBP	6.99	□□□□□ -1.29
NUP53	YMR153W	YKU80	Q04437	629 aa		6.99	□□□□□ -1.29
NUP53	YMR153W	ERB1	Q04660	807 aa	Known RBP	6.99	□□□□□ -1.29
NUP53	YMR153W	DYN3	Q04949	312 aa		6.99	□□□□□ -1.29
NUP53	YMR153W	ATG38	Q05789	226 aa	Known RBP	6.99	□□□□□ -1.29
NUP53	YMR153W	DCR2	Q05924	578 aa		6.99	□□□□□ -1.29
NUP53	YMR153W	YPR202W	Q08993	238 aa		6.99	□□□□□ -1.29
NUP53	YMR153W	RIB2	Q12362	591 aa	Known RBP	6.99	□□□□□ -1.29
NUP53	YMR153W	RPP1B	P10622	106 aa	Known RBP	6.98	□□□□□ -1.29
NUP53	YMR153W	CBS1	P14066	229 aa		6.98	□□□□□ -1.29
NUP53	YMR153W	PRP4	P20053	465 aa	Known RBP	6.98	□□□□□ -1.29
NUP53	YMR153W	CLB3	P24870	427 aa		6.98	□□□□□ -1.29
NUP53	YMR153W	PBN1	P25580	416 aa		6.98	□□□□□ -1.29
NUP53	YMR153W	ERG9	P29704	444 aa		6.98	□□□□□ -1.29
NUP53	YMR153W	LHP1	P33399	275 aa	Known RBP	6.98	□□□□□ -1.29
NUP53	YMR153W	FAA2	P39518	744 aa		6.98	□□□□□ -1.29
NUP53	YMR153W	YJL193W	P39542	402 aa		6.98	□□□□□ -1.29
NUP53	YMR153W	YIL169C	P40442	995 aa		6.98	□□□□□ -1.29
NUP53	YMR153W	PGU1	P47180	361 aa		6.98	□□□□□ -1.29
NUP53	YMR153W	ECL1	P48235	211 aa		6.98	□□□□□ -1.29
NUP53	YMR153W	DIA3	P52290	468 aa		6.98	□□□□□ -1.29
NUP53	YMR153W	COS6	P53344	381 aa		6.98	□□□□□ -1.29
NUP53	YMR153W	DCP2	P53550	970 aa	Known RBP	6.98	□□□□□ -1.29
NUP53	YMR153W	PLM2	Q04383	521 aa		6.98	□□□□□ -1.29
NUP53	YMR153W	HSP31	Q04432	237 aa		6.98	□□□□□ -1.29
NUP53	YMR153W	RDR1	Q08904	546 aa		6.98	□□□□□ -1.29
NUP53	YMR153W	Q0144	Q9ZZW2	109 aa		6.98	□□□□□ -1.29
NUP53	YMR153W	ATP6	P00854	259 aa		6.97	□□□□□ -1.29
NUP53	YMR153W	ADE5,7	P07244	802 aa	Known RBP	6.97	□□□□□ -1.29
NUP53	YMR153W	YHR214C-D	P0CX93	97 aa		6.97	□□□□□ -1.29
NUP53	YMR153W	DBP3	P20447	523 aa	Known RBP	6.97	□□□□□ -1.29
NUP53	YMR153W	PTC6	P25646	442 aa		6.97	□□□□□ -1.29
NUP53	YMR153W	SBA1	P28707	216 aa	Known RBP	6.97	□□□□□ -1.29
NUP53	YMR153W	TSC10	P38342	320 aa		6.97	□□□□□ -1.29
NUP53	YMR153W	TRM5	P38793	499 aa		6.97	□□□□□ -1.29
NUP53	YMR153W	MTW1	P39731	289 aa		6.97	□□□□□ -1.29
NUP53	YMR153W	MRX1	P40050	688 aa		6.97	□□□□□ -1.29
NUP53	YMR153W	RLP7	P40693	322 aa	Known RBP	6.97	□□□□□ -1.29
NUP53	YMR153W	SMK1	P41808	388 aa		6.97	□□□□□ -1.29
NUP53	YMR153W	LSG1	P53145	640 aa	Known RBP	6.97	□□□□□ -1.29
NUP53	YMR153W	DBP6	P53734	629 aa	Known RBP	6.97	□□□□□ -1.29
NUP53	YMR153W	RRG7	Q08774	242 aa	Predicted RBP	6.97	□□□□□ -1.29
NUP53	YMR153W	MF(ALPHA)1	P01149	165 aa		6.96	□□□□□ -1.3
NUP53	YMR153W	HTA1	P04911	132 aa	Known RBP	6.96	□□□□□ -1.3
NUP53	YMR153W	STE12	P13574	688 aa		6.96	□□□□□ -1.3
NUP53	YMR153W	THR1	P17423	357 aa	Known RBP	6.96	□□□□□ -1.3
NUP53	YMR153W	SEC61	P32915	480 aa		6.96	□□□□□ -1.3
NUP53	YMR153W	YPT7	P32939	208 aa		6.96	□□□□□ -1.3
NUP53	YMR153W	ECM34	P38728	170 aa		6.96	□□□□□ -1.3
NUP53	YMR153W	BIG1	P38813	335 aa		6.96	□□□□□ -1.3
NUP53	YMR153W	NSG1	P38837	291 aa		6.96	□□□□□ -1.3
NUP53	YMR153W	FAD1	P38913	306 aa		6.96	□□□□□ -1.3
NUP53	YMR153W	ARF3	P40994	183 aa	RIP-Chip data	6.96	□□□□□ -1.3	not detected
NUP53	YMR153W	YNL181W	P53878	407 aa		6.96	□□□□□ -1.3
NUP53	YMR153W	RSC9	Q03124	581 aa		6.96	□□□□□ -1.3
NUP53	YMR153W	KRE28	Q04431	385 aa		6.96	□□□□□ -1.3
NUP53	YMR153W	ARR1	Q06596	294 aa		6.96	□□□□□ -1.3
NUP53	YMR153W	SFG1	Q12507	346 aa		6.96	□□□□□ -1.3
NUP53	YMR153W	FLO9	P39712	1322 aa		6.96	□□□□□ -1.3
NUP53	YMR153W	SSA3	P09435	649 aa	Known RBP	6.95	□□□□□ -1.3
NUP53	YMR153W	MCM1	P11746	286 aa		6.95	□□□□□ -1.3
NUP53	YMR153W	KSS1	P14681	368 aa		6.95	□□□□□ -1.3
NUP53	YMR153W	RPS1B	P23248	255 aa	Known RBP	6.95	□□□□□ -1.3
NUP53	YMR153W	ATP7	P30902	174 aa		6.95	□□□□□ -1.3
NUP53	YMR153W	ATS1	P31386	333 aa		6.95	□□□□□ -1.3

Retrieved 100 of 5,963 RNA–protein pairs in 50.9 ms