RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 RUFY4Q6ZNE9 571 aa18.32■□□□□ 0.52
TRIM28-206ENST00000595974 PIK3AP1Q6ZUJ8 805 aa18.32■□□□□ 0.52
TRIM28-206ENST00000595974 ETNPPLQ8TBG4 499 aa18.32■□□□□ 0.52
TRIM28-206ENST00000595974 PHOSPHO2Q8TCD6 241 aa18.32■□□□□ 0.52
TRIM28-206ENST00000595974 TTYH1Q9H313 450 aaPredicted RBP18.32■□□□□ 0.52
TRIM28-206ENST00000595974 SAMM50Q9Y512 469 aa18.32■□□□□ 0.52
TRIM28-206ENST00000595974 MAFBQ9Y5Q3 323 aaPredicted RBP18.32■□□□□ 0.52
TRIM28-206ENST00000595974 ABHD14A-ACY1A0A1B0GW23 586 aa18.31■□□□□ 0.52
TRIM28-206ENST00000595974 ST18O60284 1047 aa18.31■□□□□ 0.52
TRIM28-206ENST00000595974 PSMD10O75832 226 aa18.31■□□□□ 0.52
TRIM28-206ENST00000595974 PBX2P40425 430 aa18.31■□□□□ 0.52
TRIM28-206ENST00000595974 HMGN5P82970 282 aaKnown RBP18.31■□□□□ 0.52
TRIM28-206ENST00000595974 NR5A1Q13285 461 aa18.31■□□□□ 0.52
TRIM28-206ENST00000595974 RDM1Q8NG50 284 aa18.31■□□□□ 0.52
TRIM28-206ENST00000595974 TNFRSF25Q93038 417 aa18.31■□□□□ 0.52
TRIM28-206ENST00000595974 SEMA6BQ9H3T3 888 aa18.31■□□□□ 0.52
TRIM28-206ENST00000595974 DISC1Q9NRI5 854 aa18.31■□□□□ 0.52
TRIM28-206ENST00000595974 PCDHA11Q9Y5I1 949 aa18.31■□□□□ 0.52
TRIM28-206ENST00000595974 COL6A3P12111 3177 aa18.31■□□□□ 0.52
TRIM28-206ENST00000595974 SLC37A4O43826 429 aa18.3■□□□□ 0.52
TRIM28-206ENST00000595974 WDR5P61964 334 aaKnown RBP18.3■□□□□ 0.52
TRIM28-206ENST00000595974 IKBKEQ14164 716 aa18.3■□□□□ 0.52
TRIM28-206ENST00000595974 PLEKHG4Q58EX7 1191 aa18.3■□□□□ 0.52
TRIM28-206ENST00000595974 KRT40Q6A162 431 aa18.3■□□□□ 0.52
TRIM28-206ENST00000595974 CKAP2LQ8IYA6 745 aa18.3■□□□□ 0.52
TRIM28-206ENST00000595974 DIS3L2Q8IYB7 885 aaKnown RBP18.3■□□□□ 0.52
TRIM28-206ENST00000595974 BBXQ8WY36 941 aaPredicted RBP18.3■□□□□ 0.52
TRIM28-206ENST00000595974 FAM167AQ96KS9 214 aa18.3■□□□□ 0.52
TRIM28-206ENST00000595974 FAM161BQ96MY7 647 aa18.3■□□□□ 0.52
TRIM28-206ENST00000595974 TBC1D32Q96NH3 1257 aa18.3■□□□□ 0.52
TRIM28-206ENST00000595974 GUCD1Q96NT3 240 aa18.3■□□□□ 0.52
TRIM28-206ENST00000595974 UNC45AQ9H3U1 944 aa18.3■□□□□ 0.52
TRIM28-206ENST00000595974 GABBR1Q9UBS5 961 aa18.3■□□□□ 0.52
TRIM28-206ENST00000595974 STXBP5LQ9Y2K9 1186 aa18.3■□□□□ 0.52
TRIM28-206ENST00000595974 PCDHA2Q9Y5H9 948 aa18.3■□□□□ 0.52
TRIM28-206ENST00000595974 CHMP2AO43633 222 aa18.29■□□□□ 0.52
TRIM28-206ENST00000595974 ATP4AP20648 1035 aa18.29■□□□□ 0.52
TRIM28-206ENST00000595974 MGAT3Q09327 533 aa18.29■□□□□ 0.52
TRIM28-206ENST00000595974 EARS2Q5JPH6 523 aaKnown RBP18.29■□□□□ 0.52
TRIM28-206ENST00000595974 ZNF484Q5JVG2 852 aa18.29■□□□□ 0.52
TRIM28-206ENST00000595974 B3GNT9Q6UX72 402 aa18.29■□□□□ 0.52
TRIM28-206ENST00000595974 DBF4BQ8NFT6 615 aa18.29■□□□□ 0.52
TRIM28-206ENST00000595974 TRAPPC12Q8WVT3 735 aa18.29■□□□□ 0.52
TRIM28-206ENST00000595974 DNAJB3Q8WWF6 145 aa18.29■□□□□ 0.52
TRIM28-206ENST00000595974 SEPT8Q92599 483 aa18.29■□□□□ 0.52
TRIM28-206ENST00000595974 FAM20AQ96MK3 541 aa18.29■□□□□ 0.52
TRIM28-206ENST00000595974 KCNMB3Q9NPA1 279 aa18.29■□□□□ 0.52
TRIM28-206ENST00000595974 CHD9Q3L8U1 2897 aa18.28■□□□□ 0.52
TRIM28-206ENST00000595974 SMIM35A0A1B0GVV1 85 aa18.28■□□□□ 0.52
TRIM28-206ENST00000595974 TBX3O15119 743 aa18.28■□□□□ 0.52
TRIM28-206ENST00000595974 CCNT1O60563 726 aaKnown RBP18.28■□□□□ 0.52
TRIM28-206ENST00000595974 CHRNA1P02708 482 aa18.28■□□□□ 0.52
TRIM28-206ENST00000595974 FOSBP53539 338 aa18.28■□□□□ 0.52
TRIM28-206ENST00000595974 MRPS6P82932 125 aaKnown RBP18.28■□□□□ 0.52
TRIM28-206ENST00000595974 SAFBQ15424 915 aaKnown RBP eCLIP18.28■□□□□ 0.52
TRIM28-206ENST00000595974 TCTN1Q2MV58 587 aa18.28■□□□□ 0.52
TRIM28-206ENST00000595974 MTHFD1LQ6UB35 978 aa18.28■□□□□ 0.52
TRIM28-206ENST00000595974 MIER3Q7Z3K6 550 aa18.28■□□□□ 0.52
TRIM28-206ENST00000595974 HERC6Q8IVU3 1022 aa18.28■□□□□ 0.52
TRIM28-206ENST00000595974 APBB2Q92870 758 aa18.28■□□□□ 0.52
TRIM28-206ENST00000595974 GJA10Q969M2 543 aa18.28■□□□□ 0.52
TRIM28-206ENST00000595974 C8orf76Q96K31 380 aa18.28■□□□□ 0.52
TRIM28-206ENST00000595974 FAM49AQ9H0Q0 323 aaPredicted RBP18.28■□□□□ 0.52
TRIM28-206ENST00000595974 ZNF576Q9H609 170 aa18.28■□□□□ 0.52
TRIM28-206ENST00000595974 CEP131Q9UPN4 1083 aa18.28■□□□□ 0.52
TRIM28-206ENST00000595974 YBX2Q9Y2T7 364 aaKnown RBP18.28■□□□□ 0.52
TRIM28-206ENST00000595974 FAM205CA6NFA0 338 aa18.27■□□□□ 0.52
TRIM28-206ENST00000595974 ZBTB42B2RXF5 422 aa18.27■□□□□ 0.52
TRIM28-206ENST00000595974 BTBD18B2RXH4 712 aa18.27■□□□□ 0.52
TRIM28-206ENST00000595974 M0QZ92 97 aa18.27■□□□□ 0.52
TRIM28-206ENST00000595974 KLRC1P26715 233 aa18.27■□□□□ 0.52
TRIM28-206ENST00000595974 RABGGTBP53611 331 aa18.27■□□□□ 0.52
TRIM28-206ENST00000595974 PRKCEQ02156 737 aa18.27■□□□□ 0.52
TRIM28-206ENST00000595974 MKRN4PQ13434 485 aaPredicted RBP18.27■□□□□ 0.52
TRIM28-206ENST00000595974 IER5Q5VY09 327 aa18.27■□□□□ 0.52
TRIM28-206ENST00000595974 ZBTB10Q96DT7 871 aa18.27■□□□□ 0.52
TRIM28-206ENST00000595974 IFIH1Q9BYX4 1025 aaKnown RBP18.27■□□□□ 0.52
TRIM28-206ENST00000595974 NKX2-4Q9H2Z4 354 aa18.27■□□□□ 0.52
TRIM28-206ENST00000595974 SLC28A3Q9HAS3 691 aa18.27■□□□□ 0.52
TRIM28-206ENST00000595974 CHD7Q9P2D1 2997 aa18.27■□□□□ 0.52
TRIM28-206ENST00000595974 CDY2AQ9Y6F7 541 aa18.27■□□□□ 0.52
TRIM28-206ENST00000595974 KIF28PB7ZC32 967 aa18.26■□□□□ 0.51
TRIM28-206ENST00000595974 ZNF862O60290 1169 aa18.26■□□□□ 0.51
TRIM28-206ENST00000595974 OATP04181 439 aa18.26■□□□□ 0.51
TRIM28-206ENST00000595974 DEFB103AP81534 67 aa18.26■□□□□ 0.51
TRIM28-206ENST00000595974 PPP2R5CQ13362 524 aa18.26■□□□□ 0.51
TRIM28-206ENST00000595974 POTEDQ86YR6 584 aa18.26■□□□□ 0.51
TRIM28-206ENST00000595974 NME8Q8N427 588 aa18.26■□□□□ 0.51
TRIM28-206ENST00000595974 FAM184AQ8NB25 1140 aa18.26■□□□□ 0.51
TRIM28-206ENST00000595974 CDX2Q99626 313 aaPredicted RBP18.26■□□□□ 0.51
TRIM28-206ENST00000595974 TRPV2Q9Y5S1 764 aa18.26■□□□□ 0.51
TRIM28-206ENST00000595974 KDM3AQ9Y4C1 1321 aa18.25■□□□□ 0.51
TRIM28-206ENST00000595974 C22orf31O95567 290 aa18.25■□□□□ 0.51
TRIM28-206ENST00000595974 GHRP10912 638 aa18.25■□□□□ 0.51
TRIM28-206ENST00000595974 MCM2P49736 904 aa18.25■□□□□ 0.51
TRIM28-206ENST00000595974 UGCGQ16739 394 aa18.25■□□□□ 0.51
TRIM28-206ENST00000595974 FBXO47Q5MNV8 452 aa18.25■□□□□ 0.51
TRIM28-206ENST00000595974 PPP2R2DQ66LE6 453 aa18.25■□□□□ 0.51
TRIM28-206ENST00000595974 TSHZ1Q6ZSZ6 1077 aa18.25■□□□□ 0.51
TRIM28-206ENST00000595974 SLFN12Q8IYM2 578 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms