RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 TRAPPC10P48553 1259 aa10.55□□□□□ -0.72
LDLR-211ENST00000560173 SPIRE1Q08AE8 756 aa10.55□□□□□ -0.72
LDLR-211ENST00000560173 PPP2R5CQ13362 524 aa10.55□□□□□ -0.72
LDLR-211ENST00000560173 ORC2Q13416 577 aaPredicted RBP10.55□□□□□ -0.72
LDLR-211ENST00000560173 GNL2Q13823 731 aaKnown RBP10.55□□□□□ -0.72
LDLR-211ENST00000560173 CALCRLQ16602 461 aa10.55□□□□□ -0.72
LDLR-211ENST00000560173 UGCGQ16739 394 aa10.55□□□□□ -0.72
LDLR-211ENST00000560173 PSRC1Q6PGN9 363 aaPredicted RBP10.55□□□□□ -0.72
LDLR-211ENST00000560173 POTEBQ6S5H4 581 aa10.55□□□□□ -0.72
LDLR-211ENST00000560173 LRRC8DQ7L1W4 858 aa10.55□□□□□ -0.72
LDLR-211ENST00000560173 MIER3Q7Z3K6 550 aa10.55□□□□□ -0.72
LDLR-211ENST00000560173 SLFN12Q8IYM2 578 aa10.55□□□□□ -0.72
LDLR-211ENST00000560173 RETREG2Q8NC44 543 aa10.55□□□□□ -0.72
LDLR-211ENST00000560173 INTS4Q96HW7 963 aaKnown RBP10.55□□□□□ -0.72
LDLR-211ENST00000560173 GUCD1Q96NT3 240 aa10.55□□□□□ -0.72
LDLR-211ENST00000560173 TUBE1Q9UJT0 475 aa10.55□□□□□ -0.72
LDLR-211ENST00000560173 SAMM50Q9Y512 469 aa10.55□□□□□ -0.72
LDLR-211ENST00000560173 MUC3AQ02505 3323 aa10.55□□□□□ -0.72
LDLR-211ENST00000560173 COL1A2P08123 1366 aa10.54□□□□□ -0.72
LDLR-211ENST00000560173 ZBTB42B2RXF5 422 aa10.54□□□□□ -0.72
LDLR-211ENST00000560173 H3BQV1 296 aa10.54□□□□□ -0.72
LDLR-211ENST00000560173 HBP1O60381 514 aa10.54□□□□□ -0.72
LDLR-211ENST00000560173 CAND2O75155 1236 aa10.54□□□□□ -0.72
LDLR-211ENST00000560173 BAG4O95429 457 aaKnown RBP10.54□□□□□ -0.72
LDLR-211ENST00000560173 ACRP10323 421 aa10.54□□□□□ -0.72
LDLR-211ENST00000560173 ATP2B1P20020 1258 aa10.54□□□□□ -0.72
LDLR-211ENST00000560173 RFC2P35250 354 aa10.54□□□□□ -0.72
LDLR-211ENST00000560173 THPOP40225 353 aa10.54□□□□□ -0.72
LDLR-211ENST00000560173 IGBP1P78318 339 aa10.54□□□□□ -0.72
LDLR-211ENST00000560173 PRKCEQ02156 737 aa10.54□□□□□ -0.72
LDLR-211ENST00000560173 SHHQ15465 462 aa10.54□□□□□ -0.72
LDLR-211ENST00000560173 TTC38Q5R3I4 469 aa10.54□□□□□ -0.72
LDLR-211ENST00000560173 TMEM240Q5SV17 173 aa10.54□□□□□ -0.72
LDLR-211ENST00000560173 ZNF618Q5T7W0 954 aa10.54□□□□□ -0.72
LDLR-211ENST00000560173 TAF2Q6P1X5 1199 aa10.54□□□□□ -0.72
LDLR-211ENST00000560173 RUFY4Q6ZNE9 571 aa10.54□□□□□ -0.72
LDLR-211ENST00000560173 TRAPPC12Q8WVT3 735 aa10.54□□□□□ -0.72
LDLR-211ENST00000560173 TNPO1Q92973 898 aaKnown RBP10.54□□□□□ -0.72
LDLR-211ENST00000560173 ZBTB10Q96DT7 871 aa10.54□□□□□ -0.72
LDLR-211ENST00000560173 FAM167AQ96KS9 214 aa10.54□□□□□ -0.72
LDLR-211ENST00000560173 MTMR9Q96QG7 549 aa10.54□□□□□ -0.72
LDLR-211ENST00000560173 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.54□□□□□ -0.72
LDLR-211ENST00000560173 TMEM60Q9H2L4 133 aa10.54□□□□□ -0.72
LDLR-211ENST00000560173 NOL7Q9UMY1 257 aaKnown RBP10.54□□□□□ -0.72
LDLR-211ENST00000560173 KAT6AQ92794 2004 aa10.53□□□□□ -0.72
LDLR-211ENST00000560173 MARCH6O60337 910 aa10.53□□□□□ -0.72
LDLR-211ENST00000560173 OATP04181 439 aa10.53□□□□□ -0.72
LDLR-211ENST00000560173 PFKMP08237 780 aa10.53□□□□□ -0.72
LDLR-211ENST00000560173 MCM7P33993 719 aa10.53□□□□□ -0.72
LDLR-211ENST00000560173 TOB1P50616 345 aaPredicted RBP10.53□□□□□ -0.72
LDLR-211ENST00000560173 MBTPS1Q14703 1052 aa10.53□□□□□ -0.72
LDLR-211ENST00000560173 GPNMBQ14956 572 aa10.53□□□□□ -0.72
LDLR-211ENST00000560173 ZNF174Q15697 407 aa10.53□□□□□ -0.72
LDLR-211ENST00000560173 ZNF484Q5JVG2 852 aa10.53□□□□□ -0.72
LDLR-211ENST00000560173 RASIP1Q5U651 963 aa10.53□□□□□ -0.72
LDLR-211ENST00000560173 LARP1BQ659C4 914 aaKnown RBP10.53□□□□□ -0.72
LDLR-211ENST00000560173 MCTP1Q6DN14 999 aa10.53□□□□□ -0.72
LDLR-211ENST00000560173 FAM109BQ6ICB4 259 aaPredicted RBP10.53□□□□□ -0.72
LDLR-211ENST00000560173 ZNF365Q70YC5 407 aa10.53□□□□□ -0.72
LDLR-211ENST00000560173 RPAINQ86UA6 219 aa10.53□□□□□ -0.72
LDLR-211ENST00000560173 HSCBQ8IWL3 235 aa10.53□□□□□ -0.72
LDLR-211ENST00000560173 CKAP2LQ8IYA6 745 aa10.53□□□□□ -0.72
LDLR-211ENST00000560173 RPUSD2Q8IZ73 545 aaKnown RBP10.53□□□□□ -0.72
LDLR-211ENST00000560173 BBXQ8WY36 941 aaPredicted RBP10.53□□□□□ -0.72
LDLR-211ENST00000560173 RNPC3Q96LT9 517 aaKnown RBP10.53□□□□□ -0.72
LDLR-211ENST00000560173 PCDHA2Q9Y5H9 948 aa10.53□□□□□ -0.72
LDLR-211ENST00000560173 SCN5AQ14524 2016 aa10.53□□□□□ -0.72
LDLR-211ENST00000560173 WDR81Q562E7 1941 aa10.52□□□□□ -0.72
LDLR-211ENST00000560173 TET1Q8NFU7 2136 aa10.52□□□□□ -0.72
LDLR-211ENST00000560173 MYH9P35579 1960 aaKnown RBP10.52□□□□□ -0.72
LDLR-211ENST00000560173 CDH23Q9H251 3354 aa10.52□□□□□ -0.73
LDLR-211ENST00000560173 RSPH10B2B2RC85 870 aa10.52□□□□□ -0.73
LDLR-211ENST00000560173 NBNO60934 754 aa10.52□□□□□ -0.73
LDLR-211ENST00000560173 STBD1O95210 358 aa10.52□□□□□ -0.73
LDLR-211ENST00000560173 PARNO95453 639 aaKnown RBP10.52□□□□□ -0.73
LDLR-211ENST00000560173 C22orf31O95567 290 aa10.52□□□□□ -0.73
LDLR-211ENST00000560173 CXCL10P02778 98 aa10.52□□□□□ -0.73
LDLR-211ENST00000560173 CTSHP09668 335 aa10.52□□□□□ -0.73
LDLR-211ENST00000560173 OR52Z1P0C646 297 aa10.52□□□□□ -0.73
LDLR-211ENST00000560173 RSPH10BP0C881 870 aa10.52□□□□□ -0.73
LDLR-211ENST00000560173 PDCP20941 246 aa10.52□□□□□ -0.73
LDLR-211ENST00000560173 PSMC5P62195 406 aa10.52□□□□□ -0.73
LDLR-211ENST00000560173 NBR1Q14596 966 aa10.52□□□□□ -0.73
LDLR-211ENST00000560173 EPHA7Q15375 998 aa10.52□□□□□ -0.73
LDLR-211ENST00000560173 FAM26DQ5JW98 314 aa10.52□□□□□ -0.73
LDLR-211ENST00000560173 NCAPH2Q6IBW4 605 aa10.52□□□□□ -0.73
LDLR-211ENST00000560173 MTHFD1LQ6UB35 978 aa10.52□□□□□ -0.73
LDLR-211ENST00000560173 DEFB128Q7Z7B8 93 aa10.52□□□□□ -0.73
LDLR-211ENST00000560173 BANK1Q8NDB2 785 aa10.52□□□□□ -0.73
LDLR-211ENST00000560173 HERVK_113Q902F9 699 aa10.52□□□□□ -0.73
LDLR-211ENST00000560173 TTC12Q9H892 705 aaPredicted RBP10.52□□□□□ -0.73
LDLR-211ENST00000560173 FGBP02675 491 aa10.51□□□□□ -0.73
LDLR-211ENST00000560173 RPLP2P05387 115 aaKnown RBP10.51□□□□□ -0.73
LDLR-211ENST00000560173 P4HBP07237 508 aaKnown RBP10.51□□□□□ -0.73
LDLR-211ENST00000560173 KLRC1P26715 233 aa10.51□□□□□ -0.73
LDLR-211ENST00000560173 TXKP42681 527 aa10.51□□□□□ -0.73
LDLR-211ENST00000560173 QARSP47897 775 aaKnown RBP10.51□□□□□ -0.73
LDLR-211ENST00000560173 MGAT3Q09327 533 aa10.51□□□□□ -0.73
LDLR-211ENST00000560173 TARBP2Q15633 366 aaKnown RBP10.51□□□□□ -0.73
LDLR-211ENST00000560173 RILPL1Q5EBL4 403 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms