RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 AZI2Q9H6S1 392 aa10.59□□□□□ -0.71
LDLR-211ENST00000560173 KCNMB3Q9NPA1 279 aa10.59□□□□□ -0.71
LDLR-211ENST00000560173 ERAP1Q9NZ08 941 aa10.59□□□□□ -0.71
LDLR-211ENST00000560173 TCEAL9Q9UHQ7 104 aa10.59□□□□□ -0.71
LDLR-211ENST00000560173 NOD1Q9Y239 953 aa10.59□□□□□ -0.71
LDLR-211ENST00000560173 KIF3AQ9Y496 699 aa10.59□□□□□ -0.71
LDLR-211ENST00000560173 PRUNE2Q8WUY3 3088 aa10.59□□□□□ -0.71
LDLR-211ENST00000560173 C17orf102A2RUQ5 167 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 WDR64B1ANS9 1081 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 PITPNM1O00562 1244 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 WNT7AO00755 349 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 BACH1O14867 736 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 CCNT1O60563 726 aaKnown RBP10.58□□□□□ -0.72
LDLR-211ENST00000560173 MARK3P27448 753 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 GJB2P29033 226 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 STAT5BP51692 787 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 EPHB4P54760 987 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 ZNF200P98182 395 aaPredicted RBP10.58□□□□□ -0.72
LDLR-211ENST00000560173 FPGSQ05932 587 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 RBL2Q08999 1139 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 PPFIA1Q13136 1202 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 BECN1Q14457 450 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 TRIM71Q2Q1W2 868 aaKnown RBP10.58□□□□□ -0.72
LDLR-211ENST00000560173 MIS18BP1Q6P0N0 1132 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 B3GNT9Q6UX72 402 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 PLPPR4Q7Z2D5 763 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 SERINC5Q86VE9 423 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 POTEDQ86YR6 584 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 CCDC60Q8IWA6 550 aaPredicted RBP10.58□□□□□ -0.72
LDLR-211ENST00000560173 TDHQ8IZJ6 230 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 AFAP1L1Q8TED9 768 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 LMBR1Q8WVP7 490 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 WNT8BQ93098 351 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 TEKT3Q9BXF9 490 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 UNC45AQ9H3U1 944 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 PRDM6Q9NQX0 595 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 SETD4Q9NVD3 440 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 SMC3Q9UQE7 1217 aa10.58□□□□□ -0.72
LDLR-211ENST00000560173 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.58□□□□□ -0.72
LDLR-211ENST00000560173 KIF28PB7ZC32 967 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 TBX3O15119 743 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 CSF2RAP15509 400 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 SLC26A2P50443 739 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 JAK3P52333 1124 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 CCL23P55773 120 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 ADAM17P78536 824 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 PTK7Q13308 1070 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 PPIGQ13427 754 aaKnown RBP eCLIP10.57□□□□□ -0.726e-7■□□□□ 9.2
LDLR-211ENST00000560173 BFSP2Q13515 415 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 PLCB4Q15147 1175 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 GRIK4Q16099 956 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 FAM160B1Q5W0V3 765 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 NOSTRINQ8IVI9 506 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 TMEM199Q8N511 208 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 CCDC155Q8N6L0 562 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 RDM1Q8NG50 284 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 CAGE1Q8TC20 777 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 HAS1Q92839 578 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 ATP6V0A1Q93050 837 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 SNX21Q969T3 373 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 FAM20AQ96MK3 541 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 ZNF302Q9NR11 478 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 DISC1Q9NRI5 854 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 VAV3Q9UKW4 847 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 PCDHA10Q9Y5I2 948 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 NRCAMQ92823 1304 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 IGSF9BQ9UPX0 1349 aa10.57□□□□□ -0.72
LDLR-211ENST00000560173 TRIP12Q14669 1992 aaPredicted RBP10.56□□□□□ -0.72
LDLR-211ENST00000560173 TANC1Q9C0D5 1861 aa10.56□□□□□ -0.72
LDLR-211ENST00000560173 MBLAC1A4D2B0 266 aaPredicted RBP10.56□□□□□ -0.72
LDLR-211ENST00000560173 K7ELQ4 463 aaPredicted RBP10.56□□□□□ -0.72
LDLR-211ENST00000560173 TREHO43280 583 aa10.56□□□□□ -0.72
LDLR-211ENST00000560173 CHMP2AO43633 222 aa10.56□□□□□ -0.72
LDLR-211ENST00000560173 PSAPP07602 524 aa10.56□□□□□ -0.72
LDLR-211ENST00000560173 GNAT1P11488 350 aa10.56□□□□□ -0.72
LDLR-211ENST00000560173 ATP4AP20648 1035 aa10.56□□□□□ -0.72
LDLR-211ENST00000560173 U2AF2P26368 475 aaKnown RBP eCLIP10.56□□□□□ -0.72
LDLR-211ENST00000560173 SFNP31947 248 aa10.56□□□□□ -0.72
LDLR-211ENST00000560173 C9orf50Q5SZB4 431 aa10.56□□□□□ -0.72
LDLR-211ENST00000560173 MARCH8Q5T0T0 291 aa10.56□□□□□ -0.72
LDLR-211ENST00000560173 SWSAP1Q6NVH7 229 aa10.56□□□□□ -0.72
LDLR-211ENST00000560173 PDXDC2PQ6P474 469 aa10.56□□□□□ -0.72
LDLR-211ENST00000560173 TRAF7Q6Q0C0 670 aa10.56□□□□□ -0.72
LDLR-211ENST00000560173 C16orf59Q7L2K0 433 aa10.56□□□□□ -0.72
LDLR-211ENST00000560173 ATP8B4Q8TF62 1192 aa10.56□□□□□ -0.72
LDLR-211ENST00000560173 VWCEQ96DN2 955 aa10.56□□□□□ -0.72
LDLR-211ENST00000560173 SCLYQ96I15 445 aa10.56□□□□□ -0.72
LDLR-211ENST00000560173 IL23AQ9NPF7 189 aa10.56□□□□□ -0.72
LDLR-211ENST00000560173 GABBR1Q9UBS5 961 aa10.56□□□□□ -0.72
LDLR-211ENST00000560173 TRPC6Q9Y210 931 aa10.56□□□□□ -0.72
LDLR-211ENST00000560173 MAFBQ9Y5Q3 323 aaPredicted RBP10.56□□□□□ -0.72
LDLR-211ENST00000560173 POTEB3A0JP26 581 aa10.55□□□□□ -0.72
LDLR-211ENST00000560173 RRN3P2A6NIE6 340 aa10.55□□□□□ -0.72
LDLR-211ENST00000560173 EML1O00423 815 aa10.55□□□□□ -0.72
LDLR-211ENST00000560173 ZNF862O60290 1169 aa10.55□□□□□ -0.72
LDLR-211ENST00000560173 NEMFO60524 1076 aa10.55□□□□□ -0.72
LDLR-211ENST00000560173 IQCF3P0C7M6 154 aa10.55□□□□□ -0.72
LDLR-211ENST00000560173 CKBP12277 381 aa10.55□□□□□ -0.72
LDLR-211ENST00000560173 INSRRP14616 1297 aa10.55□□□□□ -0.72
LDLR-211ENST00000560173 SELPP16109 830 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 130.2 ms