RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 MX2P20592 715 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 SOX5P35711 763 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 BFSP1Q12934 665 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 AP3B2Q13367 1082 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 PDCD6IPQ8WUM4 868 aaKnown RBP10.61□□□□□ -0.71
COL4A6-202ENST00000372216 AIFM3Q96NN9 605 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 RMDN3Q96TC7 470 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 VCX3BQ9H321 246 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 RCSD1Q6JBY9 416 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 CYB5R4Q7L1T6 521 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 PNMA8AQ86V59 439 aaPredicted RBP10.61□□□□□ -0.71
COL4A6-202ENST00000372216 VSIG1Q86XK7 387 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 C10orf67Q8IYJ2 551 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 PDCD7Q8N8D1 485 aaKnown RBP10.61□□□□□ -0.71
COL4A6-202ENST00000372216 SLC44A5Q8NCS7 719 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 UBE2Q2Q8WVN8 375 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 CHAMP1Q96JM3 812 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 TACO1Q9BSH4 297 aaKnown RBP10.61□□□□□ -0.71
COL4A6-202ENST00000372216 MSTO1Q9BUK6 570 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 SUGT1Q9Y2Z0 365 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 GOLGA8SH3BPF8 625 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 GBP1P32455 592 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 EPHB1P54762 984 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 FOXO4P98177 505 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 SMAD1Q15797 465 aaKnown RBP10.6□□□□□ -0.71
COL4A6-202ENST00000372216 GIMAP8Q8ND71 665 aaPredicted RBP10.6□□□□□ -0.71
COL4A6-202ENST00000372216 TCP11Q8WWU5 503 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 GOLGA8IPA6NC78 632 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 GOLGA8JA6NMD2 632 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 GOLGA8CPA6NN73 597 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 SGK1O00141 431 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 H2AFZP0C0S5 128 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 RASSF7Q02833 373 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 GOLGA8FQ08AF8 430 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 GOLGA8DPQ0D2H9 430 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 TMTC3Q6ZXV5 915 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 H2AFVQ71UI9 128 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 CROCCP2Q86T23 111 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 LINC00116Q8NCU8 138 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 G3BP2Q9UN86 482 aaKnown RBP10.6□□□□□ -0.71
COL4A6-202ENST00000372216 MED7O43513 233 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 PHBP35232 272 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 ELF2Q15723 593 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 UBE2TQ9NPD8 197 aaPredicted RBP10.6□□□□□ -0.71
COL4A6-202ENST00000372216 EMILIN3Q9NT22 766 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 PPP2R2CQ9Y2T4 447 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 PCDHA5Q9Y5H7 936 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 LRRN2O75325 713 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 LARGE1O95461 756 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 GNAT1P11488 350 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 CD58P19256 250 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 NFX1Q12986 1120 aaKnown RBP10.6□□□□□ -0.71
COL4A6-202ENST00000372216 MESDQ14696 234 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 RWDD4Q6NW29 188 aaKnown RBP10.6□□□□□ -0.71
COL4A6-202ENST00000372216 DSTYKQ6XUX3 929 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 RUFY4Q6ZNE9 571 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 P3H4Q92791 437 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 ATP2A3Q93084 1043 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 CEP95Q96GE4 821 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 IQCA1LA6NCM1 817 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 ACTN1P12814 892 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 DCAF4L1Q3SXM0 396 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 CXorf38Q8TB03 319 aa10.6□□□□□ -0.71
COL4A6-202ENST00000372216 DPYSL4O14531 572 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 CFAP36Q96G28 342 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 CPVLQ9H3G5 476 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 DCP1AQ9NPI6 582 aaPredicted RBP10.59□□□□□ -0.71
COL4A6-202ENST00000372216 SRPRBQ9Y5M8 271 aaKnown RBP10.59□□□□□ -0.71
COL4A6-202ENST00000372216 USP31Q70CQ4 1352 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 SPP2Q13103 211 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 PTPN21Q16825 1174 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 HEXIM2Q96MH2 286 aaKnown RBP10.59□□□□□ -0.71
COL4A6-202ENST00000372216 GCNT4Q9P109 453 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 ARHGEF37A1IGU5 675 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 HOXD10P28358 340 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 PRELPP51888 382 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 NOP14P78316 857 aaKnown RBP10.59□□□□□ -0.71
COL4A6-202ENST00000372216 CDO1Q16878 200 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 TMED8Q6PL24 325 aaPredicted RBP10.59□□□□□ -0.71
COL4A6-202ENST00000372216 MAP7D3Q8IWC1 876 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 ATP6V0A4Q9HBG4 840 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 SLC12A6Q9UHW9 1150 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 SFI1A8K8P3 1242 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 PEX3P56589 373 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 CATSPER4Q7RTX7 472 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 MICALL2Q8IY33 904 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 TMCO5AQ8N6Q1 288 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 LINC00301Q8NCQ3 95 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 TRIM11Q96F44 468 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 RNF146Q9NTX7 359 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 IPO11Q9UI26 975 aaKnown RBP10.59□□□□□ -0.71
COL4A6-202ENST00000372216 ATF2P15336 505 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 ATP6V1E1P36543 226 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 NECTIN1Q15223 517 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 TTC19Q6DKK2 380 aaPredicted RBP10.59□□□□□ -0.71
COL4A6-202ENST00000372216 PAGE5Q96GU1 130 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 FGD4Q96M96 766 aa10.59□□□□□ -0.71
COL4A6-202ENST00000372216 PPRC1Q5VV67 1664 aaKnown RBP10.59□□□□□ -0.71
COL4A6-202ENST00000372216 CASP14P31944 242 aa10.58□□□□□ -0.72
COL4A6-202ENST00000372216 NT5C2P49902 561 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 190 ms