RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 MYL10Q9BUA6 226 aa15.62■□□□□ 0.09
TRIM28-211ENST00000597968 SMARCAD1Q9H4L7 1026 aa15.62■□□□□ 0.09
TRIM28-211ENST00000597968 SUGCTQ9HAC7 445 aa15.62■□□□□ 0.09
TRIM28-211ENST00000597968 UBIAD1Q9Y5Z9 338 aa15.62■□□□□ 0.09
TRIM28-211ENST00000597968 SORBS3O60504 671 aa15.61■□□□□ 0.09
TRIM28-211ENST00000597968 HMGB1P09429 215 aaKnown RBP15.61■□□□□ 0.09
TRIM28-211ENST00000597968 TCF7P36402 384 aaPredicted RBP15.61■□□□□ 0.09
TRIM28-211ENST00000597968 KRT32Q14532 448 aa15.61■□□□□ 0.09
TRIM28-211ENST00000597968 LMBR1Q8WVP7 490 aa15.61■□□□□ 0.09
TRIM28-211ENST00000597968 PIBF1Q8WXW3 757 aa15.61■□□□□ 0.09
TRIM28-211ENST00000597968 ANO2Q9NQ90 1003 aa15.61■□□□□ 0.09
TRIM28-211ENST00000597968 JADE2Q9NQC1 790 aa15.61■□□□□ 0.09
TRIM28-211ENST00000597968 SETD4Q9NVD3 440 aa15.61■□□□□ 0.09
TRIM28-211ENST00000597968 SQORQ9Y6N5 450 aa15.61■□□□□ 0.09
TRIM28-211ENST00000597968 MBLAC1A4D2B0 266 aaPredicted RBP15.6■□□□□ 0.09
TRIM28-211ENST00000597968 RRN3P2A6NIE6 340 aa15.6■□□□□ 0.09
TRIM28-211ENST00000597968 ITGB5P18084 799 aa15.6■□□□□ 0.09
TRIM28-211ENST00000597968 ARHGAP4P98171 946 aa15.6■□□□□ 0.09
TRIM28-211ENST00000597968 PTPROQ16827 1216 aa15.6■□□□□ 0.09
TRIM28-211ENST00000597968 TCTN1Q2MV58 587 aa15.6■□□□□ 0.09
TRIM28-211ENST00000597968 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.6■□□□□ 0.09
TRIM28-211ENST00000597968 MYOCDQ8IZQ8 938 aa15.6■□□□□ 0.09
TRIM28-211ENST00000597968 ZFP91Q96JP5 570 aaPredicted RBP15.6■□□□□ 0.09
TRIM28-211ENST00000597968 NEK1Q96PY6 1258 aa15.6■□□□□ 0.09
TRIM28-211ENST00000597968 C1QTNF1Q9BXJ1 281 aa15.6■□□□□ 0.09
TRIM28-211ENST00000597968 IFIH1Q9BYX4 1025 aaKnown RBP15.6■□□□□ 0.09
TRIM28-211ENST00000597968 BCAS3Q9H6U6 928 aa15.6■□□□□ 0.09
TRIM28-211ENST00000597968 PCDHA6Q9UN73 950 aa15.6■□□□□ 0.09
TRIM28-211ENST00000597968 RWDD3Q9Y3V2 267 aa15.6■□□□□ 0.09
TRIM28-211ENST00000597968 PCDHA8Q9Y5H6 950 aa15.6■□□□□ 0.09
TRIM28-211ENST00000597968 BAZ2BQ9UIF8 2168 aaKnown RBP15.6■□□□□ 0.09
TRIM28-211ENST00000597968 PTPRSQ13332 1948 aa15.59■□□□□ 0.09
TRIM28-211ENST00000597968 SLC26A2P50443 739 aa15.59■□□□□ 0.09
TRIM28-211ENST00000597968 UTP14CQ5TAP6 766 aaKnown RBP15.59■□□□□ 0.09
TRIM28-211ENST00000597968 MCTP2Q6DN12 878 aa15.59■□□□□ 0.09
TRIM28-211ENST00000597968 APOA5Q6Q788 366 aa15.59■□□□□ 0.09
TRIM28-211ENST00000597968 CENPQQ7L2Z9 268 aaPredicted RBP15.59■□□□□ 0.09
TRIM28-211ENST00000597968 DHX32Q7L7V1 743 aaKnown RBP15.59■□□□□ 0.09
TRIM28-211ENST00000597968 FBXO22Q8NEZ5 403 aa15.59■□□□□ 0.09
TRIM28-211ENST00000597968 RIC8AQ9NPQ8 531 aa15.59■□□□□ 0.09
TRIM28-211ENST00000597968 NFASCO94856 1347 aa15.59■□□□□ 0.09
TRIM28-211ENST00000597968 GSTTP1A0A1W2PQM5 241 aa15.58■□□□□ 0.08
TRIM28-211ENST00000597968 ATP9AO75110 1047 aa15.58■□□□□ 0.08
TRIM28-211ENST00000597968 EXOSC10Q01780 885 aaKnown RBP15.58■□□□□ 0.08
TRIM28-211ENST00000597968 TFF2Q03403 129 aa15.58■□□□□ 0.08
TRIM28-211ENST00000597968 PPFIA1Q13136 1202 aa15.58■□□□□ 0.08
TRIM28-211ENST00000597968 AP3B2Q13367 1082 aa15.58■□□□□ 0.08
TRIM28-211ENST00000597968 PLPPR4Q7Z2D5 763 aa15.58■□□□□ 0.08
TRIM28-211ENST00000597968 HEATR3Q7Z4Q2 680 aa15.58■□□□□ 0.08
TRIM28-211ENST00000597968 TMCO2Q7Z6W1 182 aaPredicted RBP15.58■□□□□ 0.08
TRIM28-211ENST00000597968 MICU3Q86XE3 530 aa15.58■□□□□ 0.08
TRIM28-211ENST00000597968 TRIM50Q86XT4 487 aa15.58■□□□□ 0.08
TRIM28-211ENST00000597968 GLG1Q92896 1179 aa15.58■□□□□ 0.08
TRIM28-211ENST00000597968 MRPL38Q96DV4 380 aaKnown RBP15.58■□□□□ 0.08
TRIM28-211ENST00000597968 YME1L1Q96TA2 773 aa15.58■□□□□ 0.08
TRIM28-211ENST00000597968 MXRA8Q9BRK3 442 aa15.58■□□□□ 0.08
TRIM28-211ENST00000597968 JPH1Q9HDC5 661 aaPredicted RBP15.58■□□□□ 0.08
TRIM28-211ENST00000597968 TUBE1Q9UJT0 475 aa15.58■□□□□ 0.08
TRIM28-211ENST00000597968 PRRC2BQ5JSZ5 2229 aaKnown RBP15.58■□□□□ 0.08
TRIM28-211ENST00000597968 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.57■□□□□ 0.08
TRIM28-211ENST00000597968 CCDC196A0A1B0GTZ2 297 aa15.57■□□□□ 0.08
TRIM28-211ENST00000597968 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.57■□□□□ 0.08
TRIM28-211ENST00000597968 H3BNC9 293 aa15.57■□□□□ 0.08
TRIM28-211ENST00000597968 ZBTB43O43298 467 aa15.57■□□□□ 0.08
TRIM28-211ENST00000597968 RB1P06400 928 aa15.57■□□□□ 0.08
TRIM28-211ENST00000597968 CTSHP09668 335 aa15.57■□□□□ 0.08
TRIM28-211ENST00000597968 GRIK4Q16099 956 aa15.57■□□□□ 0.08
TRIM28-211ENST00000597968 PUS10Q3MIT2 529 aaKnown RBP15.57■□□□□ 0.08
TRIM28-211ENST00000597968 TIGD5Q53EQ6 642 aa15.57■□□□□ 0.08
TRIM28-211ENST00000597968 NIPA1Q7RTP0 329 aa15.57■□□□□ 0.08
TRIM28-211ENST00000597968 GDPD5Q8WTR4 605 aa15.57■□□□□ 0.08
TRIM28-211ENST00000597968 SDF4Q9BRK5 362 aa15.57■□□□□ 0.08
TRIM28-211ENST00000597968 FTHL17Q9BXU8 183 aa15.57■□□□□ 0.08
TRIM28-211ENST00000597968 AZI2Q9H6S1 392 aa15.57■□□□□ 0.08
TRIM28-211ENST00000597968 KCNH7Q9NS40 1196 aa15.57■□□□□ 0.08
TRIM28-211ENST00000597968 SLC9A2Q9UBY0 812 aa15.57■□□□□ 0.08
TRIM28-211ENST00000597968 CNTNAP5Q8WYK1 1306 aa15.57■□□□□ 0.08
TRIM28-211ENST00000597968 C5orf67F2Z3F1 127 aa15.56■□□□□ 0.08
TRIM28-211ENST00000597968 NCK2O43639 380 aa15.56■□□□□ 0.08
TRIM28-211ENST00000597968 CHRNA1P02708 482 aa15.56■□□□□ 0.08
TRIM28-211ENST00000597968 RXRAP19793 462 aa15.56■□□□□ 0.08
TRIM28-211ENST00000597968 KCNQ1P51787 676 aa15.56■□□□□ 0.08
TRIM28-211ENST00000597968 NAPAP54920 295 aa15.56■□□□□ 0.08
TRIM28-211ENST00000597968 SP4Q02446 784 aa15.56■□□□□ 0.08
TRIM28-211ENST00000597968 MGAT3Q09327 533 aa15.56■□□□□ 0.08
TRIM28-211ENST00000597968 RTN1Q16799 776 aa15.56■□□□□ 0.08
TRIM28-211ENST00000597968 EPC2Q52LR7 807 aa15.56■□□□□ 0.08
TRIM28-211ENST00000597968 CEP55Q53EZ4 464 aa15.56■□□□□ 0.08
TRIM28-211ENST00000597968 IER5Q5VY09 327 aa15.56■□□□□ 0.08
TRIM28-211ENST00000597968 KRT40Q6A162 431 aa15.56■□□□□ 0.08
TRIM28-211ENST00000597968 CMTR1Q8N1G2 835 aaKnown RBP15.56■□□□□ 0.08
TRIM28-211ENST00000597968 CCDC82Q8N4S0 544 aa15.56■□□□□ 0.08
TRIM28-211ENST00000597968 LMAN2LQ9H0V9 348 aa15.56■□□□□ 0.08
TRIM28-211ENST00000597968 BARHL2Q9NY43 387 aa15.56■□□□□ 0.08
TRIM28-211ENST00000597968 SIP14410 1827 aa15.56■□□□□ 0.08
TRIM28-211ENST00000597968 MICAL3Q7RTP6 2002 aa15.56■□□□□ 0.08
TRIM28-211ENST00000597968 COL4A4P53420 1690 aaPredicted RBP15.55■□□□□ 0.08
TRIM28-211ENST00000597968 ATG7O95352 703 aa15.55■□□□□ 0.08
TRIM28-211ENST00000597968 FUT2Q10981 343 aa15.55■□□□□ 0.08
TRIM28-211ENST00000597968 UBE2SQ16763 222 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms