RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 CHMP4BP1P59074 171 aa10.63□□□□□ -0.71
LDLR-211ENST00000560173 NR5A1Q13285 461 aa10.63□□□□□ -0.71
LDLR-211ENST00000560173 TRIM29Q14134 588 aa10.63□□□□□ -0.71
LDLR-211ENST00000560173 INF2Q27J81 1249 aa10.63□□□□□ -0.71
LDLR-211ENST00000560173 KIAA0753Q2KHM9 967 aa10.63□□□□□ -0.71
LDLR-211ENST00000560173 FAM47CQ5HY64 1035 aa10.63□□□□□ -0.71
LDLR-211ENST00000560173 EARS2Q5JPH6 523 aaKnown RBP10.63□□□□□ -0.71
LDLR-211ENST00000560173 MOXD1Q6UVY6 613 aa10.63□□□□□ -0.71
LDLR-211ENST00000560173 SESTD1Q86VW0 696 aa10.63□□□□□ -0.71
LDLR-211ENST00000560173 TRIM50Q86XT4 487 aa10.63□□□□□ -0.71
LDLR-211ENST00000560173 DIS3L2Q8IYB7 885 aaKnown RBP10.63□□□□□ -0.71
LDLR-211ENST00000560173 MBOAT7Q96N66 472 aa10.63□□□□□ -0.71
LDLR-211ENST00000560173 IPO9Q96P70 1041 aaKnown RBP10.63□□□□□ -0.71
LDLR-211ENST00000560173 GDF15Q99988 308 aa10.63□□□□□ -0.71
LDLR-211ENST00000560173 SDF4Q9BRK5 362 aa10.63□□□□□ -0.71
LDLR-211ENST00000560173 BRMS1Q9HCU9 246 aa10.63□□□□□ -0.71
LDLR-211ENST00000560173 TRMT13Q9NUP7 481 aaKnown RBP10.63□□□□□ -0.71
LDLR-211ENST00000560173 SLC9A2Q9UBY0 812 aa10.63□□□□□ -0.71
LDLR-211ENST00000560173 FAM205CA6NFA0 338 aa10.62□□□□□ -0.71
LDLR-211ENST00000560173 H3BRB1 525 aa10.62□□□□□ -0.71
LDLR-211ENST00000560173 IPO5O00410 1097 aaKnown RBP10.62□□□□□ -0.71
LDLR-211ENST00000560173 CCNE2O96020 404 aa10.62□□□□□ -0.71
LDLR-211ENST00000560173 ITGB8P26012 769 aa10.62□□□□□ -0.71
LDLR-211ENST00000560173 TCF7P36402 384 aaPredicted RBP10.62□□□□□ -0.71
LDLR-211ENST00000560173 ACTR2P61160 394 aa10.62□□□□□ -0.71
LDLR-211ENST00000560173 GUCY1B3Q02153 619 aa10.62□□□□□ -0.71
LDLR-211ENST00000560173 Q4G0T1 1027 aa10.62□□□□□ -0.71
LDLR-211ENST00000560173 UTP14CQ5TAP6 766 aaKnown RBP10.62□□□□□ -0.71
LDLR-211ENST00000560173 PIK3AP1Q6ZUJ8 805 aa10.62□□□□□ -0.71
LDLR-211ENST00000560173 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.62□□□□□ -0.71
LDLR-211ENST00000560173 SEPT1Q8WYJ6 367 aa10.62□□□□□ -0.71
LDLR-211ENST00000560173 C8orf76Q96K31 380 aa10.62□□□□□ -0.71
LDLR-211ENST00000560173 UIMC1Q96RL1 719 aa10.62□□□□□ -0.71
LDLR-211ENST00000560173 CTAGE1Q96RT6 745 aa10.62□□□□□ -0.71
LDLR-211ENST00000560173 ZNF577Q9BSK1 485 aa10.62□□□□□ -0.71
LDLR-211ENST00000560173 TUT1Q9H6E5 874 aaKnown RBP10.62□□□□□ -0.71
LDLR-211ENST00000560173 TBC1D22BQ9NU19 505 aa10.62□□□□□ -0.71
LDLR-211ENST00000560173 HDAC6Q9UBN7 1215 aa10.62□□□□□ -0.71
LDLR-211ENST00000560173 GTF2IRD1Q9UHL9 959 aa10.62□□□□□ -0.71
LDLR-211ENST00000560173 EMSYQ7Z589 1322 aa10.61□□□□□ -0.71
LDLR-211ENST00000560173 LAMA2P24043 3122 aaKnown RBP10.61□□□□□ -0.71
LDLR-211ENST00000560173 BTBD18B2RXH4 712 aa10.61□□□□□ -0.71
LDLR-211ENST00000560173 DDX39AO00148 427 aaKnown RBP10.61□□□□□ -0.71
LDLR-211ENST00000560173 MSH4O15457 936 aa10.61□□□□□ -0.71
LDLR-211ENST00000560173 LGR5O75473 907 aa10.61□□□□□ -0.71
LDLR-211ENST00000560173 TIMP1P01033 207 aa10.61□□□□□ -0.71
LDLR-211ENST00000560173 SUPT20HL2P0C7V6 817 aa10.61□□□□□ -0.71
LDLR-211ENST00000560173 RAG1P15918 1043 aa10.61□□□□□ -0.71
LDLR-211ENST00000560173 GCFC2P16383 781 aaKnown RBP10.61□□□□□ -0.71
LDLR-211ENST00000560173 HOXC8P31273 242 aa10.61□□□□□ -0.71
LDLR-211ENST00000560173 MDM2Q00987 491 aaPredicted RBP10.61□□□□□ -0.71
LDLR-211ENST00000560173 LETM2Q2VYF4 491 aa10.61□□□□□ -0.71
LDLR-211ENST00000560173 LRIT3Q3SXY7 679 aa10.61□□□□□ -0.71
LDLR-211ENST00000560173 GDF6Q6KF10 455 aaPredicted RBP10.61□□□□□ -0.71
LDLR-211ENST00000560173 NEK8Q86SG6 692 aa10.61□□□□□ -0.71
LDLR-211ENST00000560173 C7orf31Q8N865 590 aa10.61□□□□□ -0.71
LDLR-211ENST00000560173 FAM184AQ8NB25 1140 aa10.61□□□□□ -0.71
LDLR-211ENST00000560173 FBXO18Q8NFZ0 1043 aa10.61□□□□□ -0.71
LDLR-211ENST00000560173 SLC5A5Q92911 643 aa10.61□□□□□ -0.71
LDLR-211ENST00000560173 BADQ92934 168 aa10.61□□□□□ -0.71
LDLR-211ENST00000560173 PCYT2Q99447 389 aa10.61□□□□□ -0.71
LDLR-211ENST00000560173 LBHD1Q9BQE6 289 aaPredicted RBP10.61□□□□□ -0.71
LDLR-211ENST00000560173 NOC4LQ9BVI4 516 aaKnown RBP10.61□□□□□ -0.71
LDLR-211ENST00000560173 DAXXQ9UER7 740 aaPredicted RBP10.61□□□□□ -0.71
LDLR-211ENST00000560173 ZNF215Q9UL58 517 aaPredicted RBP10.61□□□□□ -0.71
LDLR-211ENST00000560173 IGKV6D-21A0A0A0MT36 114 aa10.6□□□□□ -0.71
LDLR-211ENST00000560173 SLC37A4O43826 429 aa10.6□□□□□ -0.71
LDLR-211ENST00000560173 ATG7O95352 703 aa10.6□□□□□ -0.71
LDLR-211ENST00000560173 SMIM10L2AP0DMW4 78 aa10.6□□□□□ -0.71
LDLR-211ENST00000560173 SMIM10L2BP0DMW5 78 aa10.6□□□□□ -0.71
LDLR-211ENST00000560173 CYP2C9P11712 490 aa10.6□□□□□ -0.71
LDLR-211ENST00000560173 CYP2C18P33260 490 aa10.6□□□□□ -0.71
LDLR-211ENST00000560173 KRT76Q01546 638 aa10.6□□□□□ -0.71
LDLR-211ENST00000560173 HIC1Q14526 733 aa10.6□□□□□ -0.71
LDLR-211ENST00000560173 SAFBQ15424 915 aaKnown RBP eCLIP10.6□□□□□ -0.71
LDLR-211ENST00000560173 PTGISQ16647 500 aa10.6□□□□□ -0.71
LDLR-211ENST00000560173 PPP4R3AQ6IN85 833 aa10.6□□□□□ -0.71
LDLR-211ENST00000560173 ZNF746Q6NUN9 644 aaPredicted RBP10.6□□□□□ -0.71
LDLR-211ENST00000560173 ABHD15Q6UXT9 468 aa10.6□□□□□ -0.71
LDLR-211ENST00000560173 ETNPPLQ8TBG4 499 aa10.6□□□□□ -0.71
LDLR-211ENST00000560173 RIT2Q99578 217 aa10.6□□□□□ -0.71
LDLR-211ENST00000560173 PPP1R12CQ9BZL4 782 aa10.6□□□□□ -0.71
LDLR-211ENST00000560173 HIPK3Q9H422 1215 aa10.6□□□□□ -0.71
LDLR-211ENST00000560173 SMARCAD1Q9H4L7 1026 aa10.6□□□□□ -0.71
LDLR-211ENST00000560173 DDX25Q9UHL0 483 aaKnown RBP10.6□□□□□ -0.71
LDLR-211ENST00000560173 UMODL1Q5DID0 1318 aa10.59□□□□□ -0.71
LDLR-211ENST00000560173 GAS7O60861 476 aa10.59□□□□□ -0.71
LDLR-211ENST00000560173 PSMD10O75832 226 aa10.59□□□□□ -0.71
LDLR-211ENST00000560173 CUL4AQ13619 759 aa10.59□□□□□ -0.71
LDLR-211ENST00000560173 LRCH2Q5VUJ6 765 aa10.59□□□□□ -0.71
LDLR-211ENST00000560173 MFSD5Q6N075 450 aa10.59□□□□□ -0.71
LDLR-211ENST00000560173 SMAP1Q8IYB5 467 aaPredicted RBP10.59□□□□□ -0.71
LDLR-211ENST00000560173 DHX38Q92620 1227 aaKnown RBP10.59□□□□□ -0.71
LDLR-211ENST00000560173 GLG1Q92896 1179 aa10.59□□□□□ -0.71
LDLR-211ENST00000560173 GJA10Q969M2 543 aa10.59□□□□□ -0.71
LDLR-211ENST00000560173 NAP1L4Q99733 375 aaKnown RBP10.59□□□□□ -0.71
LDLR-211ENST00000560173 UBE2OQ9C0C9 1292 aaKnown RBP10.59□□□□□ -0.71
LDLR-211ENST00000560173 WNT8AQ9H1J5 351 aa10.59□□□□□ -0.71
LDLR-211ENST00000560173 FOXP1Q9H334 677 aaPredicted RBP10.59□□□□□ -0.71
LDLR-211ENST00000560173 RNPEPQ9H4A4 650 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms