RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 CCDC69A6NI79 296 aa15.68■□□□□ 0.1
TRIM28-211ENST00000597968 RSPH10B2B2RC85 870 aa15.68■□□□□ 0.1
TRIM28-211ENST00000597968 MEIS2O14770 477 aa15.68■□□□□ 0.1
TRIM28-211ENST00000597968 PRC1O43663 620 aa15.68■□□□□ 0.1
TRIM28-211ENST00000597968 RSPH10BP0C881 870 aa15.68■□□□□ 0.1
TRIM28-211ENST00000597968 CCDC85BQ15834 202 aaPredicted RBP15.68■□□□□ 0.1
TRIM28-211ENST00000597968 PPP1R13LQ8WUF5 828 aa15.68■□□□□ 0.1
TRIM28-211ENST00000597968 APBB2Q92870 758 aa15.68■□□□□ 0.1
TRIM28-211ENST00000597968 GPRASP2Q96D09 838 aa15.68■□□□□ 0.1
TRIM28-211ENST00000597968 INSL6Q9Y581 213 aa15.68■□□□□ 0.1
TRIM28-211ENST00000597968 SH2B2O14492 632 aaPredicted RBP15.67■□□□□ 0.1
TRIM28-211ENST00000597968 SMIM10L2AP0DMW4 78 aa15.67■□□□□ 0.1
TRIM28-211ENST00000597968 SMIM10L2BP0DMW5 78 aa15.67■□□□□ 0.1
TRIM28-211ENST00000597968 ERVK-21P61565 698 aa15.67■□□□□ 0.1
TRIM28-211ENST00000597968 PLEKHG4Q58EX7 1191 aa15.67■□□□□ 0.1
TRIM28-211ENST00000597968 RNF20Q5VTR2 975 aa15.67■□□□□ 0.1
TRIM28-211ENST00000597968 FAM43BQ6ZT52 329 aaPredicted RBP15.67■□□□□ 0.1
TRIM28-211ENST00000597968 RPAINQ86UA6 219 aa15.67■□□□□ 0.1
TRIM28-211ENST00000597968 SGMS1Q86VZ5 419 aa15.67■□□□□ 0.1
TRIM28-211ENST00000597968 ADAMTS19Q8TE59 1207 aa15.67■□□□□ 0.1
TRIM28-211ENST00000597968 ARNTL2Q8WYA1 636 aa15.67■□□□□ 0.1
TRIM28-211ENST00000597968 SAMD11Q96NU1 681 aa15.67■□□□□ 0.1
TRIM28-211ENST00000597968 TGS1Q96RS0 853 aaKnown RBP15.67■□□□□ 0.1
TRIM28-211ENST00000597968 GPR20Q99678 358 aa15.67■□□□□ 0.1
TRIM28-211ENST00000597968 LSG1Q9H089 658 aaKnown RBP15.67■□□□□ 0.1
TRIM28-211ENST00000597968 RNPEPQ9H4A4 650 aa15.67■□□□□ 0.1
TRIM28-211ENST00000597968 TAF6LQ9Y6J9 622 aa15.67■□□□□ 0.1
TRIM28-211ENST00000597968 NRCAMQ92823 1304 aa15.67■□□□□ 0.1
TRIM28-211ENST00000597968 REV3LO60673 3130 aa15.66■□□□□ 0.1
TRIM28-211ENST00000597968 AMHP03971 560 aa15.66■□□□□ 0.1
TRIM28-211ENST00000597968 THPOP40225 353 aa15.66■□□□□ 0.1
TRIM28-211ENST00000597968 MKRN4PQ13434 485 aaPredicted RBP15.66■□□□□ 0.1
TRIM28-211ENST00000597968 NECTIN1Q15223 517 aa15.66■□□□□ 0.1
TRIM28-211ENST00000597968 NFXL1Q6ZNB6 911 aa15.66■□□□□ 0.1
TRIM28-211ENST00000597968 CYFIP1Q7L576 1253 aa15.66■□□□□ 0.1
TRIM28-211ENST00000597968 TNPO1Q92973 898 aaKnown RBP15.66■□□□□ 0.1
TRIM28-211ENST00000597968 UHRF1Q96T88 793 aaPredicted RBP15.66■□□□□ 0.1
TRIM28-211ENST00000597968 PSTPIP2Q9H939 334 aa15.66■□□□□ 0.1
TRIM28-211ENST00000597968 SLC12A7Q9Y666 1083 aa15.66■□□□□ 0.1
TRIM28-211ENST00000597968 TTC28Q96AY4 2481 aa15.65■□□□□ 0.1
TRIM28-211ENST00000597968 SLC27A2O14975 620 aa15.65■□□□□ 0.1
TRIM28-211ENST00000597968 BMP1P13497 986 aa15.65■□□□□ 0.1
TRIM28-211ENST00000597968 ADAM17P78536 824 aa15.65■□□□□ 0.1
TRIM28-211ENST00000597968 DEFB103AP81534 67 aa15.65■□□□□ 0.1
TRIM28-211ENST00000597968 HTRA4P83105 476 aaPredicted RBP15.65■□□□□ 0.1
TRIM28-211ENST00000597968 SEMA3FQ13275 785 aa15.65■□□□□ 0.1
TRIM28-211ENST00000597968 GRB10Q13322 594 aa15.65■□□□□ 0.1
TRIM28-211ENST00000597968 MBTPS1Q14703 1052 aa15.65■□□□□ 0.1
TRIM28-211ENST00000597968 FAM26DQ5JW98 314 aa15.65■□□□□ 0.1
TRIM28-211ENST00000597968 TAF2Q6P1X5 1199 aa15.65■□□□□ 0.1
TRIM28-211ENST00000597968 USP17L6PQ6QN14 398 aa15.65■□□□□ 0.1
TRIM28-211ENST00000597968 SRBD1Q8N5C6 995 aaKnown RBP15.65■□□□□ 0.1
TRIM28-211ENST00000597968 FANCBQ8NB91 859 aa15.65■□□□□ 0.1
TRIM28-211ENST00000597968 DBF4BQ8NFT6 615 aa15.65■□□□□ 0.1
TRIM28-211ENST00000597968 SEPT8Q92599 483 aa15.65■□□□□ 0.1
TRIM28-211ENST00000597968 GPKOWQ92917 476 aaPredicted RBP eCLIP15.65■□□□□ 0.1
TRIM28-211ENST00000597968 WNT8BQ93098 351 aa15.65■□□□□ 0.1
TRIM28-211ENST00000597968 ESYT1Q9BSJ8 1104 aa15.65■□□□□ 0.1
TRIM28-211ENST00000597968 EHMT1Q9H9B1 1298 aa15.65■□□□□ 0.1
TRIM28-211ENST00000597968 TET1Q8NFU7 2136 aa15.65■□□□□ 0.1
TRIM28-211ENST00000597968 TRIP12Q14669 1992 aaPredicted RBP15.64■□□□□ 0.09
TRIM28-211ENST00000597968 hCG_1984214I3L0E3 225 aa15.64■□□□□ 0.09
TRIM28-211ENST00000597968 LPXNO60711 386 aa15.64■□□□□ 0.09
TRIM28-211ENST00000597968 ZNF200P98182 395 aaPredicted RBP15.64■□□□□ 0.09
TRIM28-211ENST00000597968 HIC1Q14526 733 aa15.64■□□□□ 0.09
TRIM28-211ENST00000597968 SKIV2LQ15477 1246 aaKnown RBP15.64■□□□□ 0.09
TRIM28-211ENST00000597968 BMP2KLQ5H9B9 411 aa15.64■□□□□ 0.09
TRIM28-211ENST00000597968 CREB3L3Q68CJ9 461 aa15.64■□□□□ 0.09
TRIM28-211ENST00000597968 SYNE3Q6ZMZ3 975 aa15.64■□□□□ 0.09
TRIM28-211ENST00000597968 SKAP1Q86WV1 359 aa15.64■□□□□ 0.09
TRIM28-211ENST00000597968 MICALL1Q8N3F8 863 aa15.64■□□□□ 0.09
TRIM28-211ENST00000597968 ZNF713Q8N859 430 aaPredicted RBP15.64■□□□□ 0.09
TRIM28-211ENST00000597968 SP7Q8TDD2 431 aaPredicted RBP15.64■□□□□ 0.09
TRIM28-211ENST00000597968 SEPT1Q8WYJ6 367 aa15.64■□□□□ 0.09
TRIM28-211ENST00000597968 HLA-CQ95604 372 aa15.64■□□□□ 0.09
TRIM28-211ENST00000597968 GLT8D2Q9H1C3 349 aa15.64■□□□□ 0.09
TRIM28-211ENST00000597968 RBM28Q9NW13 759 aaKnown RBP15.64■□□□□ 0.09
TRIM28-211ENST00000597968 RTEL1Q9NZ71 1219 aa15.64■□□□□ 0.09
TRIM28-211ENST00000597968 MYH7BA7E2Y1 1941 aa15.64■□□□□ 0.09
TRIM28-211ENST00000597968 COL4A6Q14031 1691 aa15.63■□□□□ 0.09
TRIM28-211ENST00000597968 MYO9BQ13459 2157 aa15.63■□□□□ 0.09
TRIM28-211ENST00000597968 LINC01553A4QN01 128 aa15.63■□□□□ 0.09
TRIM28-211ENST00000597968 EPOPA6NHQ4 379 aa15.63■□□□□ 0.09
TRIM28-211ENST00000597968 SPDYE3A6NKU9 549 aa15.63■□□□□ 0.09
TRIM28-211ENST00000597968 TREHO43280 583 aa15.63■□□□□ 0.09
TRIM28-211ENST00000597968 ARHGEF15O94989 841 aa15.63■□□□□ 0.09
TRIM28-211ENST00000597968 RCAN1P53805 252 aa15.63■□□□□ 0.09
TRIM28-211ENST00000597968 TSGA10IPQ3SY00 556 aa15.63■□□□□ 0.09
TRIM28-211ENST00000597968 PPP1R18Q6NYC8 613 aa15.63■□□□□ 0.09
TRIM28-211ENST00000597968 TMTC3Q6ZXV5 915 aa15.63■□□□□ 0.09
TRIM28-211ENST00000597968 RSPH3Q86UC2 560 aa15.63■□□□□ 0.09
TRIM28-211ENST00000597968 TOP1MTQ969P6 601 aa15.63■□□□□ 0.09
TRIM28-211ENST00000597968 CERS4Q9HA82 394 aa15.63■□□□□ 0.09
TRIM28-211ENST00000597968 ERAP1Q9NZ08 941 aa15.63■□□□□ 0.09
TRIM28-211ENST00000597968 LCHNA4D1U4 455 aa15.62■□□□□ 0.09
TRIM28-211ENST00000597968 RFXAPO00287 272 aa15.62■□□□□ 0.09
TRIM28-211ENST00000597968 PLEKHA8P1O95397 391 aa15.62■□□□□ 0.09
TRIM28-211ENST00000597968 FOSP01100 380 aaPredicted RBP15.62■□□□□ 0.09
TRIM28-211ENST00000597968 KCNA2P16389 499 aa15.62■□□□□ 0.09
TRIM28-211ENST00000597968 MTMR1Q13613 665 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms