RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 VCANP13611 3396 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 MROH7Q68CQ1 1323 aa10.67□□□□□ -0.7
LDLR-211ENST00000560173 MEIS1O00470 390 aa10.67□□□□□ -0.7
LDLR-211ENST00000560173 PQBP1O60828 265 aaKnown RBP10.67□□□□□ -0.7
LDLR-211ENST00000560173 ATP9AO75110 1047 aa10.67□□□□□ -0.7
LDLR-211ENST00000560173 CD2BP2O95400 341 aaKnown RBP10.67□□□□□ -0.7
LDLR-211ENST00000560173 XBP1P17861 261 aa10.67□□□□□ -0.7
LDLR-211ENST00000560173 ITGA7Q13683 1181 aa10.67□□□□□ -0.7
LDLR-211ENST00000560173 DGKDQ16760 1214 aa10.67□□□□□ -0.7
LDLR-211ENST00000560173 GPR153Q6NV75 609 aa10.67□□□□□ -0.7
LDLR-211ENST00000560173 CYFIP1Q7L576 1253 aa10.67□□□□□ -0.7
LDLR-211ENST00000560173 NIPA1Q7RTP0 329 aa10.67□□□□□ -0.7
LDLR-211ENST00000560173 BLIDQ8IZY5 108 aa10.67□□□□□ -0.7
LDLR-211ENST00000560173 DEFB123Q8N688 67 aa10.67□□□□□ -0.7
LDLR-211ENST00000560173 GIMAP8Q8ND71 665 aaPredicted RBP10.67□□□□□ -0.7
LDLR-211ENST00000560173 KAT2BQ92831 832 aa10.67□□□□□ -0.7
LDLR-211ENST00000560173 SEZ6LQ9BYH1 1024 aa10.67□□□□□ -0.7
LDLR-211ENST00000560173 MLXIPQ9HAP2 919 aa10.67□□□□□ -0.7
LDLR-211ENST00000560173 PDLIM7Q9NR12 457 aa10.67□□□□□ -0.7
LDLR-211ENST00000560173 KCNH7Q9NS40 1196 aa10.67□□□□□ -0.7
LDLR-211ENST00000560173 STXBP5LQ9Y2K9 1186 aa10.67□□□□□ -0.7
LDLR-211ENST00000560173 SPTBN5Q9NRC6 3674 aaKnown RBP10.66□□□□□ -0.7
LDLR-211ENST00000560173 IGLV3-22A0A075B6J6 115 aa10.66□□□□□ -0.7
LDLR-211ENST00000560173 FAM86B1E9PN63 330 aa10.66□□□□□ -0.7
LDLR-211ENST00000560173 MAFGO15525 162 aa10.66□□□□□ -0.7
LDLR-211ENST00000560173 EDIL3O43854 480 aa10.66□□□□□ -0.7
LDLR-211ENST00000560173 PPFIA4O75335 1185 aa10.66□□□□□ -0.7
LDLR-211ENST00000560173 F2P00734 622 aa10.66□□□□□ -0.7
LDLR-211ENST00000560173 CLTBP09497 229 aa10.66□□□□□ -0.7
LDLR-211ENST00000560173 FAM86B2P0C5J1 330 aa10.66□□□□□ -0.7
LDLR-211ENST00000560173 ZNF286BP0CG31 522 aa10.66□□□□□ -0.7
LDLR-211ENST00000560173 ARP10275 920 aa10.66□□□□□ -0.7
LDLR-211ENST00000560173 SYN1P17600 705 aa10.66□□□□□ -0.7
LDLR-211ENST00000560173 CIITAP33076 1130 aa10.66□□□□□ -0.7
LDLR-211ENST00000560173 Q7L0L9 218 aa10.66□□□□□ -0.7
LDLR-211ENST00000560173 FAM126BQ8IXS8 530 aa10.66□□□□□ -0.7
LDLR-211ENST00000560173 GPR20Q99678 358 aa10.66□□□□□ -0.7
LDLR-211ENST00000560173 AGO4Q9HCK5 861 aaKnown RBP10.66□□□□□ -0.7
LDLR-211ENST00000560173 PKD2L1Q9P0L9 805 aa10.66□□□□□ -0.7
LDLR-211ENST00000560173 TELO2Q9Y4R8 837 aa10.66□□□□□ -0.7
LDLR-211ENST00000560173 EYSQ5T1H1 3165 aa10.66□□□□□ -0.7
LDLR-211ENST00000560173 MYH7BA7E2Y1 1941 aa10.66□□□□□ -0.7
LDLR-211ENST00000560173 NFASCO94856 1347 aa10.65□□□□□ -0.7
LDLR-211ENST00000560173 TRIM43BA6NCK2 446 aa10.65□□□□□ -0.7
LDLR-211ENST00000560173 DCDC2CA8MYV0 355 aa10.65□□□□□ -0.7
LDLR-211ENST00000560173 NOP56O00567 594 aaKnown RBP10.65□□□□□ -0.7
LDLR-211ENST00000560173 KIAA0355O15063 1070 aa10.65□□□□□ -0.7
LDLR-211ENST00000560173 CD4P01730 458 aa10.65□□□□□ -0.7
LDLR-211ENST00000560173 ZNF76P36508 570 aa10.65□□□□□ -0.7
LDLR-211ENST00000560173 MCM2P49736 904 aa10.65□□□□□ -0.7
LDLR-211ENST00000560173 SETQ01105 290 aaPredicted RBP10.65□□□□□ -0.7
LDLR-211ENST00000560173 FAAP100Q0VG06 881 aa10.65□□□□□ -0.7
LDLR-211ENST00000560173 ITGB3BPQ13352 177 aaPredicted RBP10.65□□□□□ -0.7
LDLR-211ENST00000560173 NBPF20Q3BBV1 942 aa10.65□□□□□ -0.7
LDLR-211ENST00000560173 NFRKBQ6P4R8 1299 aa10.65□□□□□ -0.7
LDLR-211ENST00000560173 KRT25Q7Z3Z0 450 aa10.65□□□□□ -0.7
LDLR-211ENST00000560173 SH3RF1Q7Z6J0 888 aa10.65□□□□□ -0.7
LDLR-211ENST00000560173 PLA2G4DQ86XP0 818 aa10.65□□□□□ -0.7
LDLR-211ENST00000560173 OXER1Q8TDS5 423 aa10.65□□□□□ -0.7
LDLR-211ENST00000560173 TBCKQ8TEA7 893 aa10.65□□□□□ -0.7
LDLR-211ENST00000560173 LENG9Q96B70 501 aa10.65□□□□□ -0.7
LDLR-211ENST00000560173 TRIM43Q96BQ3 446 aaPredicted RBP10.65□□□□□ -0.7
LDLR-211ENST00000560173 TMX3Q96JJ7 454 aa10.65□□□□□ -0.7
LDLR-211ENST00000560173 C16orf70Q9BSU1 422 aa10.65□□□□□ -0.7
LDLR-211ENST00000560173 JPH1Q9HDC5 661 aaPredicted RBP10.65□□□□□ -0.7
LDLR-211ENST00000560173 PRDM5Q9NQX1 630 aaPredicted RBP10.65□□□□□ -0.7
LDLR-211ENST00000560173 TBX21Q9UL17 535 aa10.65□□□□□ -0.7
LDLR-211ENST00000560173 DOCK5Q9H7D0 1870 aa10.64□□□□□ -0.71
LDLR-211ENST00000560173 HAS3O00219 553 aa10.64□□□□□ -0.71
LDLR-211ENST00000560173 TLR3O15455 904 aaKnown RBP10.64□□□□□ -0.71
LDLR-211ENST00000560173 MMP1P03956 469 aa10.64□□□□□ -0.71
LDLR-211ENST00000560173 LGALS2P05162 132 aa10.64□□□□□ -0.71
LDLR-211ENST00000560173 MAGEA10P43363 369 aaPredicted RBP10.64□□□□□ -0.71
LDLR-211ENST00000560173 PSEN2P49810 448 aa10.64□□□□□ -0.71
LDLR-211ENST00000560173 USP11P51784 963 aa10.64□□□□□ -0.71
LDLR-211ENST00000560173 FOSBP53539 338 aa10.64□□□□□ -0.71
LDLR-211ENST00000560173 HMGN5P82970 282 aaKnown RBP10.64□□□□□ -0.71
LDLR-211ENST00000560173 SP4Q02446 784 aa10.64□□□□□ -0.71
LDLR-211ENST00000560173 PTPN11Q06124 597 aaPredicted RBP10.64□□□□□ -0.71
LDLR-211ENST00000560173 MFSD10Q14728 455 aa10.64□□□□□ -0.71
LDLR-211ENST00000560173 NONOQ15233 471 aaKnown RBP eCLIP10.64□□□□□ -0.71
LDLR-211ENST00000560173 PRR16Q569H4 304 aa10.64□□□□□ -0.71
LDLR-211ENST00000560173 KRT40Q6A162 431 aa10.64□□□□□ -0.71
LDLR-211ENST00000560173 PPP1R13LQ8WUF5 828 aa10.64□□□□□ -0.71
LDLR-211ENST00000560173 TNFRSF25Q93038 417 aa10.64□□□□□ -0.71
LDLR-211ENST00000560173 KATNAL1Q9BW62 490 aa10.64□□□□□ -0.71
LDLR-211ENST00000560173 TRPV6Q9H1D0 765 aa10.64□□□□□ -0.71
LDLR-211ENST00000560173 TMEM39AQ9NV64 488 aa10.64□□□□□ -0.71
LDLR-211ENST00000560173 MTMR10Q9NXD2 777 aa10.64□□□□□ -0.71
LDLR-211ENST00000560173 PRKAG2Q9UGJ0 569 aa10.64□□□□□ -0.71
LDLR-211ENST00000560173 LTBP2Q14767 1821 aa10.63□□□□□ -0.71
LDLR-211ENST00000560173 CYP3A7-CYP3A51PA0A087WV96 503 aa10.63□□□□□ -0.71
LDLR-211ENST00000560173 CCDC194A0A1B0GVG4 234 aa10.63□□□□□ -0.71
LDLR-211ENST00000560173 GSTTP1A0A1W2PQM5 241 aa10.63□□□□□ -0.71
LDLR-211ENST00000560173 DHX15O43143 795 aaKnown RBP10.63□□□□□ -0.71
LDLR-211ENST00000560173 B4GALT4O60513 344 aa10.63□□□□□ -0.71
LDLR-211ENST00000560173 TDP2O95551 362 aa10.63□□□□□ -0.71
LDLR-211ENST00000560173 CYP3A7P24462 503 aa10.63□□□□□ -0.71
LDLR-211ENST00000560173 BMP8BP34820 402 aa10.63□□□□□ -0.71
LDLR-211ENST00000560173 KRT2P35908 639 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms