RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 TMTC1Q8IUR5 882 aa10.54□□□□□ -0.72
CUX1-206ENST00000437600 ZNF526Q8TF50 670 aaPredicted RBP10.54□□□□□ -0.72
CUX1-206ENST00000437600 TBC1D5Q92609 795 aa10.54□□□□□ -0.72
CUX1-206ENST00000437600 FBXO28Q9NVF7 368 aa10.54□□□□□ -0.72
CUX1-206ENST00000437600 POTEB3A0JP26 581 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 ERICH4A6NGS2 130 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 SFI1A8K8P3 1242 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 LGALS16A8MUM7 142 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 POTECB2RU33 542 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 ZNF185O15231 689 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 ENTPD3O75355 529 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 CCNE1P24864 410 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 PSMC6P62333 389 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 CYP4A11Q02928 519 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 ARID5AQ03989 594 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 CCDC122Q5T0U0 273 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 FAM83BQ5T0W9 1011 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 KRT79Q5XKE5 535 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 CCDC174Q6PII3 467 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 POTEBQ6S5H4 581 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 IKZF4Q9H2S9 585 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 GGA3Q9NZ52 723 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 GPRC5DQ9NZD1 345 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 NYAP2Q9P242 653 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 PRPHP41219 470 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 DNA2P51530 1060 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 CHMP4BP1P59074 171 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 SPAG1Q07617 926 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 TSR1Q2NL82 804 aaKnown RBP10.53□□□□□ -0.72
CUX1-206ENST00000437600 PRR16Q569H4 304 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 MIIPQ5JXC2 388 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 FKBP15Q5T1M5 1219 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 KRT222Q8N1A0 295 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 NOA1Q8NC60 698 aaKnown RBP10.53□□□□□ -0.72
CUX1-206ENST00000437600 CUL5Q93034 780 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 PLEKHA4Q9H4M7 779 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 NLRC4Q9NPP4 1024 aa10.53□□□□□ -0.72
CUX1-206ENST00000437600 CTAGE9A4FU28 777 aa10.52□□□□□ -0.72
CUX1-206ENST00000437600 PLA2G4AP47712 749 aa10.52□□□□□ -0.72
CUX1-206ENST00000437600 KCNB1Q14721 858 aa10.52□□□□□ -0.72
CUX1-206ENST00000437600 GPC2Q8N158 579 aa10.52□□□□□ -0.72
CUX1-206ENST00000437600 PNKPQ96T60 521 aa10.52□□□□□ -0.72
CUX1-206ENST00000437600 PYM1Q9BRP8 204 aaKnown RBP10.52□□□□□ -0.72
CUX1-206ENST00000437600 ZBTB39O15060 712 aa10.52□□□□□ -0.73
CUX1-206ENST00000437600 BMP3P12645 472 aa10.52□□□□□ -0.73
CUX1-206ENST00000437600 ZNF280AP59817 542 aaPredicted RBP10.52□□□□□ -0.73
CUX1-206ENST00000437600 HERVK_113P62684 666 aa10.52□□□□□ -0.73
CUX1-206ENST00000437600 NBPF12Q5TAG4 269 aaPredicted RBP10.52□□□□□ -0.73
CUX1-206ENST00000437600 FAM151AQ8WW52 585 aa10.52□□□□□ -0.73
CUX1-206ENST00000437600 C7orf25Q9BPX7 421 aa10.52□□□□□ -0.73
CUX1-206ENST00000437600 NHEJ1Q9H9Q4 299 aaPredicted RBP10.52□□□□□ -0.73
CUX1-206ENST00000437600 POTEFA5A3E0 1075 aa10.52□□□□□ -0.73
CUX1-206ENST00000437600 LAD1O00515 517 aa10.52□□□□□ -0.73
CUX1-206ENST00000437600 ATP1A1P05023 1023 aaKnown RBP10.52□□□□□ -0.73
CUX1-206ENST00000437600 POTEIP0CG38 1075 aa10.52□□□□□ -0.73
CUX1-206ENST00000437600 POTEJP0CG39 1038 aa10.52□□□□□ -0.73
CUX1-206ENST00000437600 CXCR5P32302 372 aa10.52□□□□□ -0.73
CUX1-206ENST00000437600 CT47A1Q5JQC4 288 aaPredicted RBP10.52□□□□□ -0.73
CUX1-206ENST00000437600 POTEGQ6S5H5 508 aa10.52□□□□□ -0.73
CUX1-206ENST00000437600 POTEEQ6S8J3 1075 aa10.52□□□□□ -0.73
CUX1-206ENST00000437600 KIAA1328Q86T90 577 aa10.52□□□□□ -0.73
CUX1-206ENST00000437600 MKL1Q969V6 931 aa10.52□□□□□ -0.73
CUX1-206ENST00000437600 ZBED3Q96IU2 234 aaPredicted RBP10.52□□□□□ -0.73
CUX1-206ENST00000437600 AK8Q96MA6 479 aa10.52□□□□□ -0.73
CUX1-206ENST00000437600 DEFB129Q9H1M3 183 aa10.52□□□□□ -0.73
CUX1-206ENST00000437600 RIC8AQ9NPQ8 531 aa10.52□□□□□ -0.73
CUX1-206ENST00000437600 ZBTB21Q9ULJ3 1066 aa10.52□□□□□ -0.73
CUX1-206ENST00000437600 GOLGA6L9A6NEM1 432 aa10.51□□□□□ -0.73
CUX1-206ENST00000437600 TRAF5O00463 557 aa10.51□□□□□ -0.73
CUX1-206ENST00000437600 SMARCA1P28370 1054 aa10.51□□□□□ -0.73
CUX1-206ENST00000437600 DNM2P50570 870 aa10.51□□□□□ -0.73
CUX1-206ENST00000437600 MRPL12P52815 198 aaKnown RBP10.51□□□□□ -0.73
CUX1-206ENST00000437600 AMPD3Q01432 767 aa10.51□□□□□ -0.73
CUX1-206ENST00000437600 TMEM266Q2M3C6 531 aa10.51□□□□□ -0.73
CUX1-206ENST00000437600 DHTKD1Q96HY7 919 aaPredicted RBP10.51□□□□□ -0.73
CUX1-206ENST00000437600 NAA15Q9BXJ9 866 aaKnown RBP10.51□□□□□ -0.73
CUX1-206ENST00000437600 SMARCAL1Q9NZC9 954 aa10.51□□□□□ -0.73
CUX1-206ENST00000437600 CDC23Q9UJX2 597 aa10.51□□□□□ -0.73
CUX1-206ENST00000437600 ATRNL1Q5VV63 1379 aa10.51□□□□□ -0.73
CUX1-206ENST00000437600 ZNF263O14978 683 aa10.51□□□□□ -0.73
CUX1-206ENST00000437600 GABPB1Q06547 395 aaPredicted RBP10.51□□□□□ -0.73
CUX1-206ENST00000437600 PABPC4Q13310 644 aaKnown RBP eCLIP10.51□□□□□ -0.732e-20■■■■■ 62.1
CUX1-206ENST00000437600 BMS1Q14692 1282 aaKnown RBP10.51□□□□□ -0.73
CUX1-206ENST00000437600 PTPROQ16827 1216 aa10.51□□□□□ -0.73
CUX1-206ENST00000437600 EAPPQ56P03 285 aaPredicted RBP10.51□□□□□ -0.73
CUX1-206ENST00000437600 HERC4Q5GLZ8 1057 aaPredicted RBP10.51□□□□□ -0.73
CUX1-206ENST00000437600 RSRC2Q7L4I2 434 aaKnown RBP10.51□□□□□ -0.73
CUX1-206ENST00000437600 RRAGAQ7L523 313 aa10.51□□□□□ -0.73
CUX1-206ENST00000437600 THAP9Q9H5L6 903 aa10.51□□□□□ -0.73
CUX1-206ENST00000437600 PRR12Q9ULL5 1215 aa10.51□□□□□ -0.73
CUX1-206ENST00000437600 CAPN11Q9UMQ6 739 aa10.51□□□□□ -0.73
CUX1-206ENST00000437600 ESYT2A0FGR8 921 aa10.5□□□□□ -0.73
CUX1-206ENST00000437600 CFBP00751 764 aa10.5□□□□□ -0.73
CUX1-206ENST00000437600 RPS12P25398 132 aaKnown RBP10.5□□□□□ -0.73
CUX1-206ENST00000437600 EEF1GP26641 437 aaKnown RBP10.5□□□□□ -0.73
CUX1-206ENST00000437600 MATR3P43243 847 aaKnown RBP eCLIP10.5□□□□□ -0.735e-7■■■■□ 22.9
CUX1-206ENST00000437600 FAM193AP78312 1265 aa10.5□□□□□ -0.73
CUX1-206ENST00000437600 SYDE2Q5VT97 1194 aa10.5□□□□□ -0.73
CUX1-206ENST00000437600 CC2D1AQ6P1N0 951 aaPredicted RBP10.5□□□□□ -0.73
CUX1-206ENST00000437600 RAD54LQ92698 747 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms