RNA–Protein interactions for RNA: YER088C

DOT6, Transcript of Protein involved in rRNA and ribosome biogenesis, yeast

Gene DOT6, Length 2,013 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DOT6	YER088C	NDE1	P40215	560 aa		1.99	□□□□□ -2.09
DOT6	YER088C	SYG1	P40528	902 aa		1.99	□□□□□ -2.09
DOT6	YER088C	GCD10	P41814	478 aa		1.99	□□□□□ -2.09
DOT6	YER088C	ZPR1	P53303	486 aa	Known RBP	1.99	□□□□□ -2.09
DOT6	YER088C	SUB1	P54000	292 aa	Known RBP	1.99	□□□□□ -2.09
DOT6	YER088C	IVY1	Q04934	453 aa		1.99	□□□□□ -2.09
DOT6	YER088C	MRPL51	Q06090	140 aa	Predicted RBP	1.99	□□□□□ -2.09
DOT6	YER088C	COG4	Q06096	861 aa		1.99	□□□□□ -2.09
DOT6	YER088C	TLG2	Q08144	397 aa		1.99	□□□□□ -2.09
DOT6	YER088C	RTP1	Q12751	981 aa		1.99	□□□□□ -2.09
DOT6	YER088C	MES1	P00958	751 aa	Known RBP	1.98	□□□□□ -2.09
DOT6	YER088C	RPL31B	P0C2H9	113 aa	Known RBP	1.98	□□□□□ -2.09
DOT6	YER088C	MRP7	P12687	371 aa		1.98	□□□□□ -2.09
DOT6	YER088C	MCK1	P21965	375 aa	Known RBP	1.98	□□□□□ -2.09
DOT6	YER088C	ROX1	P25042	368 aa		1.98	□□□□□ -2.09
DOT6	YER088C	YME1	P32795	747 aa		1.98	□□□□□ -2.09
DOT6	YER088C	PTR2	P32901	601 aa		1.98	□□□□□ -2.09
DOT6	YER088C	RRP3	P38712	501 aa	Known RBP	1.98	□□□□□ -2.09
DOT6	YER088C	TWF1	P53250	332 aa		1.98	□□□□□ -2.09
DOT6	YER088C	TRM44	Q02648	567 aa	Known RBP	1.98	□□□□□ -2.09
DOT6	YER088C	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	1.98	□□□□□ -2.09	not detected
DOT6	YER088C	SET6	Q12529	373 aa		1.98	□□□□□ -2.09
DOT6	YER088C	MTF1	P14908	341 aa	Known RBP	1.98	□□□□□ -2.09
DOT6	YER088C	GPI10	P30777	616 aa		1.98	□□□□□ -2.09
DOT6	YER088C	AGA1	P32323	725 aa		1.98	□□□□□ -2.09
DOT6	YER088C	MFT1	P33441	392 aa	Known RBP	1.98	□□□□□ -2.09
DOT6	YER088C	CMC1	P36064	111 aa		1.98	□□□□□ -2.09
DOT6	YER088C	TIF5	P38431	405 aa	Known RBP	1.98	□□□□□ -2.09
DOT6	YER088C	FAU1	P40099	211 aa		1.98	□□□□□ -2.09
DOT6	YER088C	YGL082W	P53155	381 aa		1.98	□□□□□ -2.09
DOT6	YER088C	GPI1	P53306	609 aa		1.98	□□□□□ -2.09
DOT6	YER088C	BOR1	P53838	576 aa		1.98	□□□□□ -2.09
DOT6	YER088C	IMP4	P53941	290 aa	Known RBP	1.98	□□□□□ -2.09
DOT6	YER088C	UBX2	Q04228	584 aa		1.98	□□□□□ -2.09
DOT6	YER088C	PDS5	Q04264	1277 aa		1.98	□□□□□ -2.09
DOT6	YER088C	ATG29	Q12092	213 aa		1.98	□□□□□ -2.09
DOT6	YER088C	TIP41	Q12199	356 aa		1.98	□□□□□ -2.09
DOT6	YER088C	MET17	P06106	444 aa		1.97	□□□□□ -2.09
DOT6	YER088C	GDH1	P07262	454 aa	Known RBP	1.97	□□□□□ -2.09
DOT6	YER088C	ATR1	P13090	542 aa		1.97	□□□□□ -2.09
DOT6	YER088C	CKA1	P15790	372 aa		1.97	□□□□□ -2.09
DOT6	YER088C	HPR1	P17629	752 aa	Known RBP	1.97	□□□□□ -2.09
DOT6	YER088C	SNT1	P25357	1226 aa		1.97	□□□□□ -2.09
DOT6	YER088C	BUB3	P26449	341 aa		1.97	□□□□□ -2.09
DOT6	YER088C	HSP104	P31539	908 aa	Known RBP	1.97	□□□□□ -2.09
DOT6	YER088C	ERG3	P32353	365 aa		1.97	□□□□□ -2.09
DOT6	YER088C	PMT1	P33775	817 aa		1.97	□□□□□ -2.09
DOT6	YER088C	YNK1	P36010	153 aa	Known RBP	1.97	□□□□□ -2.09
DOT6	YER088C	VID24	P38263	362 aa		1.97	□□□□□ -2.09
DOT6	YER088C	YHR218W	P38899	603 aa		1.97	□□□□□ -2.09
DOT6	YER088C	SMF1	P38925	575 aa		1.97	□□□□□ -2.09
DOT6	YER088C	NAB3	P38996	802 aa	Known RBP RIP-Chip data	1.97	□□□□□ -2.09	not detected
DOT6	YER088C	ERP2	P39704	215 aa		1.97	□□□□□ -2.09
DOT6	YER088C	YJL213W	P40896	331 aa		1.97	□□□□□ -2.09
DOT6	YER088C	YGL108C	P53139	140 aa		1.97	□□□□□ -2.09
DOT6	YER088C	CAF130	P53280	1122 aa	Predicted RBP	1.97	□□□□□ -2.09
DOT6	YER088C	IRC15	Q02733	499 aa		1.97	□□□□□ -2.09
DOT6	YER088C	RQC1	Q05468	723 aa	Known RBP	1.97	□□□□□ -2.09
DOT6	YER088C	PPT2	Q12036	173 aa		1.97	□□□□□ -2.09
DOT6	YER088C	RRG1	Q12167	365 aa	Predicted RBP	1.97	□□□□□ -2.09
DOT6	YER088C	TOR1	P35169	2470 aa		1.97	□□□□□ -2.09
DOT6	YER088C	RPL20A	P0CX23	172 aa	Known RBP	1.96	□□□□□ -2.09
DOT6	YER088C	RPL20B	P0CX24	172 aa	Predicted RBP	1.96	□□□□□ -2.09
DOT6	YER088C	PAP1	P29468	568 aa	Known RBP	1.96	□□□□□ -2.09
DOT6	YER088C	RPN12	P32496	274 aa		1.96	□□□□□ -2.09
DOT6	YER088C	PMU1	P36069	295 aa		1.96	□□□□□ -2.09
DOT6	YER088C	SHO1	P40073	367 aa		1.96	□□□□□ -2.09
DOT6	YER088C	YFL040W	P43562	540 aa		1.96	□□□□□ -2.09
DOT6	YER088C	RRT5	P43607	289 aa		1.96	□□□□□ -2.09
DOT6	YER088C	GWT1	P47026	490 aa		1.96	□□□□□ -2.09
DOT6	YER088C	RPT6	Q01939	405 aa	Known RBP	1.96	□□□□□ -2.09
DOT6	YER088C	CTF3	Q12748	733 aa		1.96	□□□□□ -2.09
DOT6	YER088C	YOL159C-A	Q3E769	90 aa		1.96	□□□□□ -2.09
DOT6	YER088C	CAR1	P00812	333 aa	Known RBP	1.96	□□□□□ -2.1
DOT6	YER088C	CDC31	P06704	161 aa	Known RBP	1.96	□□□□□ -2.1
DOT6	YER088C	PCA1	P38360	1216 aa		1.96	□□□□□ -2.1
DOT6	YER088C	UTP9	P38882	575 aa	Known RBP	1.96	□□□□□ -2.1
DOT6	YER088C	IDP2	P41939	412 aa		1.96	□□□□□ -2.1
DOT6	YER088C	HXT14	P42833	540 aa		1.96	□□□□□ -2.1
DOT6	YER088C	YGR250C	P53316	781 aa	Known RBP	1.96	□□□□□ -2.1
DOT6	YER088C	MRPL19	P53875	158 aa		1.96	□□□□□ -2.1
DOT6	YER088C	RPA49	Q01080	415 aa	Predicted RBP	1.96	□□□□□ -2.1
DOT6	YER088C	YDR239C	Q03780	787 aa		1.96	□□□□□ -2.1
DOT6	YER088C	VPS74	Q06385	345 aa		1.96	□□□□□ -2.1
DOT6	YER088C	LSP1	Q12230	341 aa	Known RBP	1.96	□□□□□ -2.1
DOT6	YER088C	BRR1	Q99177	341 aa	Predicted RBP	1.96	□□□□□ -2.1
DOT6	YER088C	PUT3	P25502	979 aa	Predicted RBP	1.95	□□□□□ -2.1
DOT6	YER088C	SPB1	P25582	841 aa	Predicted RBP	1.95	□□□□□ -2.1
DOT6	YER088C	PRO3	P32263	286 aa	Known RBP	1.95	□□□□□ -2.1
DOT6	YER088C	THI2	P38141	450 aa		1.95	□□□□□ -2.1
DOT6	YER088C	CCT2	P39076	527 aa	Known RBP	1.95	□□□□□ -2.1
DOT6	YER088C	ARF3	P40994	183 aa	RIP-Chip data	1.95	□□□□□ -2.1	not detected
DOT6	YER088C	TRS85	P46944	698 aa		1.95	□□□□□ -2.1
DOT6	YER088C	ART5	P53244	586 aa	Known RBP	1.95	□□□□□ -2.1
DOT6	YER088C	NUM1	Q00402	2748 aa		1.95	□□□□□ -2.1
DOT6	YER088C	CYB2	P00175	591 aa		1.95	□□□□□ -2.1
DOT6	YER088C	PMR1	P13586	950 aa		1.95	□□□□□ -2.1
DOT6	YER088C	ATP10	P18496	279 aa		1.95	□□□□□ -2.1
DOT6	YER088C	GEX1	P25596	615 aa		1.95	□□□□□ -2.1
DOT6	YER088C	CPR3	P25719	182 aa		1.95	□□□□□ -2.1

Retrieved 100 of 5,963 RNA–protein pairs in 43.3 ms