RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 CKBP12277 381 aa15.75■□□□□ 0.11
TRIM28-211ENST00000597968 IGFBP4P22692 258 aa15.75■□□□□ 0.11
TRIM28-211ENST00000597968 ICAM3P32942 547 aa15.75■□□□□ 0.11
TRIM28-211ENST00000597968 GNAQP50148 359 aa15.75■□□□□ 0.11
TRIM28-211ENST00000597968 RABGGTBP53611 331 aa15.75■□□□□ 0.11
TRIM28-211ENST00000597968 PTH1RQ03431 593 aa15.75■□□□□ 0.11
TRIM28-211ENST00000597968 NEDD9Q14511 834 aa15.75■□□□□ 0.11
TRIM28-211ENST00000597968 KIAA0753Q2KHM9 967 aa15.75■□□□□ 0.11
TRIM28-211ENST00000597968 AAK1Q2M2I8 961 aa15.75■□□□□ 0.11
TRIM28-211ENST00000597968 HOMER1Q86YM7 354 aa15.75■□□□□ 0.11
TRIM28-211ENST00000597968 TEX2Q8IWB9 1127 aa15.75■□□□□ 0.11
TRIM28-211ENST00000597968 IGDCC4Q8TDY8 1250 aa15.75■□□□□ 0.11
TRIM28-211ENST00000597968 SPATA33Q96N06 139 aa15.75■□□□□ 0.11
TRIM28-211ENST00000597968 ASB2Q96Q27 587 aa15.75■□□□□ 0.11
TRIM28-211ENST00000597968 PIGSQ96S52 555 aa15.75■□□□□ 0.11
TRIM28-211ENST00000597968 HDAC6Q9UBN7 1215 aa15.75■□□□□ 0.11
TRIM28-211ENST00000597968 PIK3CDO00329 1044 aa15.74■□□□□ 0.11
TRIM28-211ENST00000597968 CYTH3O43739 400 aa15.74■□□□□ 0.11
TRIM28-211ENST00000597968 GGPS1O95749 300 aa15.74■□□□□ 0.11
TRIM28-211ENST00000597968 CA3P07451 260 aa15.74■□□□□ 0.11
TRIM28-211ENST00000597968 MYCLP12524 364 aaPredicted RBP15.74■□□□□ 0.11
TRIM28-211ENST00000597968 MB21D2Q8IYB1 491 aaPredicted RBP15.74■□□□□ 0.11
TRIM28-211ENST00000597968 CTCFLQ8NI51 663 aaPredicted RBP15.74■□□□□ 0.11
TRIM28-211ENST00000597968 TMEM87BQ96K49 555 aa15.74■□□□□ 0.11
TRIM28-211ENST00000597968 INPP4AQ96PE3 977 aaPredicted RBP15.74■□□□□ 0.11
TRIM28-211ENST00000597968 SENP7Q9BQF6 1050 aa15.74■□□□□ 0.11
TRIM28-211ENST00000597968 USP26Q9BXU7 913 aa15.74■□□□□ 0.11
TRIM28-211ENST00000597968 MLXIPQ9HAP2 919 aa15.74■□□□□ 0.11
TRIM28-211ENST00000597968 LMCD1Q9NZU5 365 aa15.74■□□□□ 0.11
TRIM28-211ENST00000597968 MYH6P13533 1939 aa15.74■□□□□ 0.11
TRIM28-211ENST00000597968 CALM1P0DP23 149 aa15.73■□□□□ 0.11
TRIM28-211ENST00000597968 CALM2P0DP24 149 aa15.73■□□□□ 0.11
TRIM28-211ENST00000597968 CALM3P0DP25 149 aa15.73■□□□□ 0.11
TRIM28-211ENST00000597968 UBA1P22314 1058 aaKnown RBP15.73■□□□□ 0.11
TRIM28-211ENST00000597968 HOXA13P31271 388 aaPredicted RBP15.73■□□□□ 0.11
TRIM28-211ENST00000597968 HOXC8P31273 242 aa15.73■□□□□ 0.11
TRIM28-211ENST00000597968 IKBKEQ14164 716 aa15.73■□□□□ 0.11
TRIM28-211ENST00000597968 HSDL1Q3SXM5 330 aa15.73■□□□□ 0.11
TRIM28-211ENST00000597968 CASC1Q6TDU7 716 aa15.73■□□□□ 0.11
TRIM28-211ENST00000597968 GIMAP8Q8ND71 665 aaPredicted RBP15.73■□□□□ 0.11
TRIM28-211ENST00000597968 CUL5Q93034 780 aa15.73■□□□□ 0.11
TRIM28-211ENST00000597968 C16orf70Q9BSU1 422 aa15.73■□□□□ 0.11
TRIM28-211ENST00000597968 TRANK1O15050 2925 aa15.73■□□□□ 0.11
TRIM28-211ENST00000597968 H3BRB1 525 aa15.72■□□□□ 0.11
TRIM28-211ENST00000597968 TNFRSF10AO00220 468 aa15.72■□□□□ 0.11
TRIM28-211ENST00000597968 FIBPO43427 364 aa15.72■□□□□ 0.11
TRIM28-211ENST00000597968 TLL1O43897 1013 aa15.72■□□□□ 0.11
TRIM28-211ENST00000597968 GNAT1P11488 350 aa15.72■□□□□ 0.11
TRIM28-211ENST00000597968 MYOGP15173 224 aa15.72■□□□□ 0.11
TRIM28-211ENST00000597968 MCM5P33992 734 aa15.72■□□□□ 0.11
TRIM28-211ENST00000597968 LIFRP42702 1097 aa15.72■□□□□ 0.11
TRIM28-211ENST00000597968 CHMP4BP1P59074 171 aa15.72■□□□□ 0.11
TRIM28-211ENST00000597968 WDR5P61964 334 aaKnown RBP15.72■□□□□ 0.11
TRIM28-211ENST00000597968 TAP1Q03518 808 aa15.72■□□□□ 0.11
TRIM28-211ENST00000597968 GPNMBQ14956 572 aa15.72■□□□□ 0.11
TRIM28-211ENST00000597968 METTL7BQ6UX53 244 aa15.72■□□□□ 0.11
TRIM28-211ENST00000597968 SERINC5Q86VE9 423 aa15.72■□□□□ 0.11
TRIM28-211ENST00000597968 IL27Q8NEV9 243 aa15.72■□□□□ 0.11
TRIM28-211ENST00000597968 DHX38Q92620 1227 aaKnown RBP15.72■□□□□ 0.11
TRIM28-211ENST00000597968 RRP36Q96EU6 259 aaKnown RBP15.72■□□□□ 0.11
TRIM28-211ENST00000597968 CDHR1Q96JP9 859 aa15.72■□□□□ 0.11
TRIM28-211ENST00000597968 TUT1Q9H6E5 874 aaKnown RBP15.72■□□□□ 0.11
TRIM28-211ENST00000597968 PRDM6Q9NQX0 595 aa15.72■□□□□ 0.11
TRIM28-211ENST00000597968 SEC63Q9UGP8 760 aaKnown RBP15.72■□□□□ 0.11
TRIM28-211ENST00000597968 COG5Q9UP83 839 aa15.72■□□□□ 0.11
TRIM28-211ENST00000597968 SPATA31C2B4DYI2 1134 aa15.71■□□□□ 0.11
TRIM28-211ENST00000597968 NOP56O00567 594 aaKnown RBP15.71■□□□□ 0.11
TRIM28-211ENST00000597968 GJB5O95377 273 aa15.71■□□□□ 0.11
TRIM28-211ENST00000597968 SP2Q02086 613 aa15.71■□□□□ 0.11
TRIM28-211ENST00000597968 SLC35G1Q2M3R5 365 aa15.71■□□□□ 0.11
TRIM28-211ENST00000597968 TRIM71Q2Q1W2 868 aaKnown RBP15.71■□□□□ 0.11
TRIM28-211ENST00000597968 PCNX4Q63HM2 1172 aa15.71■□□□□ 0.11
TRIM28-211ENST00000597968 FCHSD1Q86WN1 690 aa15.71■□□□□ 0.11
TRIM28-211ENST00000597968 ZNF654Q8IZM8 581 aa15.71■□□□□ 0.11
TRIM28-211ENST00000597968 RAD9AQ99638 391 aa15.71■□□□□ 0.11
TRIM28-211ENST00000597968 ALG1Q9BT22 464 aa15.71■□□□□ 0.11
TRIM28-211ENST00000597968 LY9Q9HBG7 655 aa15.71■□□□□ 0.11
TRIM28-211ENST00000597968 RBM8AQ9Y5S9 174 aaKnown RBP15.71■□□□□ 0.11
TRIM28-211ENST00000597968 MTCH2Q9Y6C9 303 aa15.71■□□□□ 0.11
TRIM28-211ENST00000597968 GBF1Q92538 1859 aa15.71■□□□□ 0.11
TRIM28-211ENST00000597968 C17orf102A2RUQ5 167 aa15.7■□□□□ 0.1
TRIM28-211ENST00000597968 MAFGO15525 162 aa15.7■□□□□ 0.1
TRIM28-211ENST00000597968 NBNO60934 754 aa15.7■□□□□ 0.1
TRIM28-211ENST00000597968 ZNF286BP0CG31 522 aa15.7■□□□□ 0.1
TRIM28-211ENST00000597968 ANTXR2P58335 489 aa15.7■□□□□ 0.1
TRIM28-211ENST00000597968 MRPS9P82933 396 aaKnown RBP15.7■□□□□ 0.1
TRIM28-211ENST00000597968 TRAF7Q6Q0C0 670 aa15.7■□□□□ 0.1
TRIM28-211ENST00000597968 IL31RAQ8NI17 732 aa15.7■□□□□ 0.1
TRIM28-211ENST00000597968 PPM1EQ8WY54 764 aa15.7■□□□□ 0.1
TRIM28-211ENST00000597968 ZNF215Q9UL58 517 aaPredicted RBP15.7■□□□□ 0.1
TRIM28-211ENST00000597968 LGR5O75473 907 aa15.69■□□□□ 0.1
TRIM28-211ENST00000597968 LGALS2P05162 132 aa15.69■□□□□ 0.1
TRIM28-211ENST00000597968 RPLP2P05387 115 aaKnown RBP15.69■□□□□ 0.1
TRIM28-211ENST00000597968 ZNF618Q5T7W0 954 aa15.69■□□□□ 0.1
TRIM28-211ENST00000597968 NLRX1Q86UT6 975 aa15.69■□□□□ 0.1
TRIM28-211ENST00000597968 SMARCC2Q8TAQ2 1214 aa15.69■□□□□ 0.1
TRIM28-211ENST00000597968 ATP6V0A1Q93050 837 aa15.69■□□□□ 0.1
TRIM28-211ENST00000597968 ZBED2Q9BTP6 218 aa15.69■□□□□ 0.1
TRIM28-211ENST00000597968 SENP2Q9HC62 589 aa15.69■□□□□ 0.1
TRIM28-211ENST00000597968 SCN5AQ14524 2016 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms